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Conserved domains on  [gi|124486690|ref|NP_001074526|]
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tectonin beta-propeller repeat-containing protein 2 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tectonin super family cl41172
Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a ...
1191-1385 4.60e-18

Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a 6 bladed beta propeller structure.


The actual alignment was detected with superfamily member pfam19193:

Pssm-ID: 465992 [Multi-domain]  Cd Length: 215  Bit Score: 84.61  E-value: 4.60e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1191 QDALWALDSLGQVFIRTlskscptGMHWTKLDLSqlgtvrLTSL-ACGNQHIWACDSRGGVYFRVGTQPLNPSLmlPAWi 1269
Cdd:pfam19193   43 PAGVWGVNSNNKIYKYV-------GGSWVPVDGS------LKQVdAGGDGQVWGVNSADDIYCLNGDDASSYAG--LPW- 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1270 mieppVQLAG-VTLVSVhsSPNDqmLWALDSRWNVHVRTGITEEMPVGTDWEHVPGlQACQLALSTR-TVWARCPNGDLA 1347
Cdd:pfam19193  107 -----TQVDGsLKYYSC--GPGG--CWGVNSNDDIYYRRYVGPSTCGGTGWTQVPG-KLKMIEVGSDgSVFGVNSNGNVY 176
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 124486690  1348 RRYGITDKNPAGDYWKKIPGSVSCFTVTSSD-ELWAVGS 1385
Cdd:pfam19193  177 QRTGISSSNPTGTGWTQIPGSLSIKHVSYDLgRLWGVNT 215
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1008-1039 3.10e-05

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


:

Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 42.02  E-value: 3.10e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 124486690  1008 TLWALDIHGKLWFRTGVVPKKPQGddDHWWQV 1039
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTG--TSWEHV 30
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
959-986 1.10e-04

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


:

Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 40.48  E-value: 1.10e-04
                           10        20
                   ....*....|....*....|....*...
gi 124486690   959 VVWALTEQRALLYREGVSSFCPEGEQWK 986
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTGTSWE 28
ANAPC4_WD40 super family cl14918
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
90-151 5.64e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


The actual alignment was detected with superfamily member pfam12894:

Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 37.64  E-value: 5.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124486690    90 DLVAAGTASGRVAVF----QLVSSLPGRNKQLRrfdvtgvhktsITALAWSPNGMKLFSGDDKGKI 151
Cdd:pfam12894    8 DLIALATEDGELLLHrlnwQRVWTLSPDKEDLE-----------VTSLAWRPDGKLLAVGYSDGTV 62
 
Name Accession Description Interval E-value
Tectonin pfam19193
Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a ...
1191-1385 4.60e-18

Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a 6 bladed beta propeller structure.


Pssm-ID: 465992 [Multi-domain]  Cd Length: 215  Bit Score: 84.61  E-value: 4.60e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1191 QDALWALDSLGQVFIRTlskscptGMHWTKLDLSqlgtvrLTSL-ACGNQHIWACDSRGGVYFRVGTQPLNPSLmlPAWi 1269
Cdd:pfam19193   43 PAGVWGVNSNNKIYKYV-------GGSWVPVDGS------LKQVdAGGDGQVWGVNSADDIYCLNGDDASSYAG--LPW- 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1270 mieppVQLAG-VTLVSVhsSPNDqmLWALDSRWNVHVRTGITEEMPVGTDWEHVPGlQACQLALSTR-TVWARCPNGDLA 1347
Cdd:pfam19193  107 -----TQVDGsLKYYSC--GPGG--CWGVNSNDDIYYRRYVGPSTCGGTGWTQVPG-KLKMIEVGSDgSVFGVNSNGNVY 176
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 124486690  1348 RRYGITDKNPAGDYWKKIPGSVSCFTVTSSD-ELWAVGS 1385
Cdd:pfam19193  177 QRTGISSSNPTGTGWTQIPGSLSIKHVSYDLgRLWGVNT 215
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1008-1039 3.10e-05

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 42.02  E-value: 3.10e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 124486690  1008 TLWALDIHGKLWFRTGVVPKKPQGddDHWWQV 1039
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTG--TSWEHV 30
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
959-986 1.10e-04

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 40.48  E-value: 1.10e-04
                           10        20
                   ....*....|....*....|....*...
gi 124486690   959 VVWALTEQRALLYREGVSSFCPEGEQWK 986
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTGTSWE 28
TECPR smart00706
Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal ...
1360-1392 1.29e-04

Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins;


Pssm-ID: 214782 [Multi-domain]  Cd Length: 35  Bit Score: 40.56  E-value: 1.29e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 124486690   1360 DYWKKIPGSVSCFTVTSSDELWAVGSSGCLLQR 1392
Cdd:smart00706    1 GSWTQVPGELVQVSVGPSDTVWAVNSDGNIYRR 33
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
90-151 5.64e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 37.64  E-value: 5.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124486690    90 DLVAAGTASGRVAVF----QLVSSLPGRNKQLRrfdvtgvhktsITALAWSPNGMKLFSGDDKGKI 151
Cdd:pfam12894    8 DLIALATEDGELLLHrlnwQRVWTLSPDKEDLE-----------VTSLAWRPDGKLLAVGYSDGTV 62
TECPR smart00706
Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal ...
997-1023 7.45e-03

Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins;


Pssm-ID: 214782 [Multi-domain]  Cd Length: 35  Bit Score: 35.55  E-value: 7.45e-03
                            10        20
                    ....*....|....*....|....*..
gi 124486690    997 EPVCITLGDQHTLWALDIHGKLWFRTG 1023
Cdd:smart00706    9 ELVQVSVGPSDTVWAVNSDGNIYRRTG 35
 
Name Accession Description Interval E-value
Tectonin pfam19193
Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a ...
1191-1385 4.60e-18

Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a 6 bladed beta propeller structure.


Pssm-ID: 465992 [Multi-domain]  Cd Length: 215  Bit Score: 84.61  E-value: 4.60e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1191 QDALWALDSLGQVFIRTlskscptGMHWTKLDLSqlgtvrLTSL-ACGNQHIWACDSRGGVYFRVGTQPLNPSLmlPAWi 1269
Cdd:pfam19193   43 PAGVWGVNSNNKIYKYV-------GGSWVPVDGS------LKQVdAGGDGQVWGVNSADDIYCLNGDDASSYAG--LPW- 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1270 mieppVQLAG-VTLVSVhsSPNDqmLWALDSRWNVHVRTGITEEMPVGTDWEHVPGlQACQLALSTR-TVWARCPNGDLA 1347
Cdd:pfam19193  107 -----TQVDGsLKYYSC--GPGG--CWGVNSNDDIYYRRYVGPSTCGGTGWTQVPG-KLKMIEVGSDgSVFGVNSNGNVY 176
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 124486690  1348 RRYGITDKNPAGDYWKKIPGSVSCFTVTSSD-ELWAVGS 1385
Cdd:pfam19193  177 QRTGISSSNPTGTGWTQIPGSLSIKHVSYDLgRLWGVNT 215
Tectonin pfam19193
Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a ...
1195-1404 5.10e-10

Tectonin domain; This entry represents proteins homologous to tectonin. This protein adopts a 6 bladed beta propeller structure.


Pssm-ID: 465992 [Multi-domain]  Cd Length: 215  Bit Score: 61.12  E-value: 5.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1195 WALDSLGQVFIRTLSKscptgmhWTKLDlsqlGtvRLTSLACGNQHIWACDSRGGVYFRVGTQplnpslmlpaWimiepp 1274
Cdd:pfam19193   13 WGVDSAGNVYYLTGSS-------WVRVP----G--RLKHVSVGPAGVWGVNSNNKIYKYVGGS----------W------ 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486690  1275 VQLAGvTLVSVHSSPnDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQAcQLALSTRTVWARCPNGDLARRYGITD 1354
Cdd:pfam19193   64 VPVDG-SLKQVDAGG-DGQVWGVNSADDIYCLNGDDASSYAGLPWTQVDGSLK-YYSCGPGGCWGVNSNDDIYYRRYVGP 140
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 124486690  1355 KNPAGDYWKKIPGSVSCFTVTSSDELWAVGSSGCLLQRLTKTFShshNPQ 1404
Cdd:pfam19193  141 STCGGTGWTQVPGKLKMIEVGSDGSVFGVNSNGNVYQRTGISSS---NPT 187
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1293-1322 6.39e-07

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 46.64  E-value: 6.39e-07
                           10        20        30
                   ....*....|....*....|....*....|
gi 124486690  1293 MLWALDSRWNVHVRTGITEEMPVGTDWEHV 1322
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTGTSWEHV 30
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1336-1365 9.73e-07

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 46.25  E-value: 9.73e-07
                           10        20        30
                   ....*....|....*....|....*....|
gi 124486690  1336 TVWARCPNGDLARRYGITDKNPAGDYWKKI 1365
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTGTSWEHV 30
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1008-1039 3.10e-05

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 42.02  E-value: 3.10e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 124486690  1008 TLWALDIHGKLWFRTGVVPKKPQGddDHWWQV 1039
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTG--TSWEHV 30
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
959-986 1.10e-04

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 40.48  E-value: 1.10e-04
                           10        20
                   ....*....|....*....|....*...
gi 124486690   959 VVWALTEQRALLYREGVSSFCPEGEQWK 986
Cdd:pfam06462    1 QVWAVTSDGRVYFRTGVTPSNPTGTSWE 28
TECPR smart00706
Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal ...
1360-1392 1.29e-04

Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins;


Pssm-ID: 214782 [Multi-domain]  Cd Length: 35  Bit Score: 40.56  E-value: 1.29e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 124486690   1360 DYWKKIPGSVSCFTVTSSDELWAVGSSGCLLQR 1392
Cdd:smart00706    1 GSWTQVPGELVQVSVGPSDTVWAVNSDGNIYRR 33
Hyd_WA pfam06462
Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from ...
1193-1221 1.76e-04

Propeller; Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) and both proteins contain six tandem repeats that are each 33-37 amino acids in length. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis. Tectonin beta-propeller repeat-containing protein 1 (TECPR1) has a critical function during autophagosome maturation and autophagosome-lysosome fusion.


Pssm-ID: 461921 [Multi-domain]  Cd Length: 30  Bit Score: 40.09  E-value: 1.76e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 124486690  1193 ALWALDSLGQVFIRT-LSKSCPTGMHWTKL 1221
Cdd:pfam06462    1 QVWAVTSDGRVYFRTgVTPSNPTGTSWEHV 30
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
90-151 5.64e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 37.64  E-value: 5.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124486690    90 DLVAAGTASGRVAVF----QLVSSLPGRNKQLRrfdvtgvhktsITALAWSPNGMKLFSGDDKGKI 151
Cdd:pfam12894    8 DLIALATEDGELLLHrlnwQRVWTLSPDKEDLE-----------VTSLAWRPDGKLLAVGYSDGTV 62
TECPR smart00706
Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal ...
997-1023 7.45e-03

Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins;


Pssm-ID: 214782 [Multi-domain]  Cd Length: 35  Bit Score: 35.55  E-value: 7.45e-03
                            10        20
                    ....*....|....*....|....*..
gi 124486690    997 EPVCITLGDQHTLWALDIHGKLWFRTG 1023
Cdd:smart00706    9 ELVQVSVGPSDTVWAVNSDGNIYRRTG 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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