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Conserved domains on  [gi|72001342|ref|NP_001024266|]
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Lysine-specific demethylase 9 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 433-666 9.61e-09

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 60.48  E-value: 9.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   433 AILEEAAKVTRPPAE---KKPPVVVEETIRAVPFVFKQEMPLPfvlaaaaaAAKEPETRPEPRPEPKQNGYhvKQAEPLQ 509
Cdd:PRK10263  324 AAATTATQSWAAPVEpvtQTPPVASVDVPPAQPTVAWQPVPGP--------QTGEPVIAPAPEGYPQQSQY--AQPAVQY 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   510 AEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSE 589
Cdd:PRK10263  394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   590 PAEPPKPSDAPREPEVAAAEAVIPEPSPA-------VSVEEPPRREERAASMAGIPPPPPTSsrhSPVPRREDRAEFMAR 662
Cdd:PRK10263  474 QEPLYQQPQPVEQQPVVEPEPVVEETKPArpplyyfEEVEEKRAREREQLAAWYQPIPEPVK---EPEPIKSSLKAPSVA 550


                  ....
gi 72001342   663 STPP 666
Cdd:PRK10263  551 AVPP 554
tolA super family cl35847
cell envelope integrity inner membrane protein TolA; Provisional
 398-448 3.94e-03

cell envelope integrity inner membrane protein TolA; Provisional


The actual alignment was detected with superfamily member PRK09510:

Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 41.72  E-value: 3.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 72001342   398 KKQQETEEQEKAAKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEK 448
Cdd:PRK09510  168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 433-666 9.61e-09

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 60.48  E-value: 9.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   433 AILEEAAKVTRPPAE---KKPPVVVEETIRAVPFVFKQEMPLPfvlaaaaaAAKEPETRPEPRPEPKQNGYhvKQAEPLQ 509
Cdd:PRK10263  324 AAATTATQSWAAPVEpvtQTPPVASVDVPPAQPTVAWQPVPGP--------QTGEPVIAPAPEGYPQQSQY--AQPAVQY 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   510 AEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSE 589
Cdd:PRK10263  394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   590 PAEPPKPSDAPREPEVAAAEAVIPEPSPA-------VSVEEPPRREERAASMAGIPPPPPTSsrhSPVPRREDRAEFMAR 662
Cdd:PRK10263  474 QEPLYQQPQPVEQQPVVEPEPVVEETKPArpplyyfEEVEEKRAREREQLAAWYQPIPEPVK---EPEPIKSSLKAPSVA 550


                  ....
gi 72001342   663 STPP 666
Cdd:PRK10263  551 AVPP 554
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 390-670 2.13e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 42.69  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   390 LEHMQRKRKKQQETE---------EQEKA-AKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEKKPPVvvEETIR 459
Cdd:NF033838  190 LELVKEEAKEPRDEEkikqakakvESKKAeATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPK--RRAKR 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   460 AVPfvfkQEMPLPfvlAAAAAAAKEP------ETRPEPRPEPKQNgyhVKQAEPLQAEPPQngyrlaAAQALQHEPRQ-- 531
Cdd:NF033838  268 GVL----GEPATP---DKKENDAKSSdssvgeETLPSPSLKPEKK---VAEAEKKVEEAKK------KAKDQKEEDRRny 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   532 ASEPLQNVQPEPS------KQAS-ELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPE 604
Cdd:NF033838  332 PTNTYKTLELEIAesdvkvKEAElELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDK 411

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72001342   605 VAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPPPTSSRHSPVPRREDRAEFMARSTPPAPGK 670
Cdd:NF033838  412 VKEKPAEQPQPAPAPQPEKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEK 477
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 505-632 3.26e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442349 [Multi-domain]  Cd Length: 298  Bit Score: 41.60  E-value: 3.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342  505 AEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASElvqngyAAPQEPRRATPPPEPLRNELPKHSDLLNV 584
Cdd:COG3115   36 DKPSKRDVLLDDDGIGEVRVVAAEAPERVEPEASFDAEDEVREPD------QEEVDPLLDDEADIEAAPAEPVRWAGTAA 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 72001342  585 SKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAA 632
Cdd:COG3115  110 AVEPAPEQEAYEEAGPAGESAEQEDAPAEEPEAEAPAEEALAAELCAE 157
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 398-448 3.94e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 41.72  E-value: 3.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 72001342   398 KKQQETEEQEKAAKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEK 448
Cdd:PRK09510  168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
 369-465 6.68e-03

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 41.14  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342    369 KTKAPEKIPSPPATVTSSTDSLEHMQRKR---KKQQETEEQEKAAKKAKRH-----------QEERERQKIEAEKRKKAI 434
Cdd:pfam05262  253 KQQEAKNLPKPADTSSPKEDKQVAENQKReieKAQIEIKKNDEEALKAKDHkafdlkqeskaSEKEAEDKELEAQKKREP 332

                           90       100       110
                   ....*....|....*....|....*....|.
gi 72001342    435 LEEAAKVTRPPAEKKPPVVVEETIRAVPFVF 465
Cdd:pfam05262  333 VAEDLQKTKPQVEAQPTSLNEDAIDSSNPVY 363
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 393-449 7.26e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 40.60  E-value: 7.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72001342    393 MQRKRKKQQETEEQEKAAKKA--KRHQEERERQKIEAEKRKKAI-------LEEAAKVTRPPAEKK 449
Cdd:TIGR02794   94 LEQRAAAEKAAKQAEQAAKQAeeKQKQAEEAKAKQAAEAKAKAEaeaerkaKEEAAKQAEEEAKAK 159
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 433-666 9.61e-09

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 60.48  E-value: 9.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   433 AILEEAAKVTRPPAE---KKPPVVVEETIRAVPFVFKQEMPLPfvlaaaaaAAKEPETRPEPRPEPKQNGYhvKQAEPLQ 509
Cdd:PRK10263  324 AAATTATQSWAAPVEpvtQTPPVASVDVPPAQPTVAWQPVPGP--------QTGEPVIAPAPEGYPQQSQY--AQPAVQY 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   510 AEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSE 589
Cdd:PRK10263  394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   590 PAEPPKPSDAPREPEVAAAEAVIPEPSPA-------VSVEEPPRREERAASMAGIPPPPPTSsrhSPVPRREDRAEFMAR 662
Cdd:PRK10263  474 QEPLYQQPQPVEQQPVVEPEPVVEETKPArpplyyfEEVEEKRAREREQLAAWYQPIPEPVK---EPEPIKSSLKAPSVA 550


                  ....
gi 72001342   663 STPP 666
Cdd:PRK10263  551 AVPP 554
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 485-681 2.53e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.76  E-value: 2.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   485 PETRPEPRPEPKQNGYHVKQAEPLQ-------AEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGYAA 557
Cdd:PRK07764  605 SSGPPEEAARPAAPAAPAAPAAPAPagaaaapAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA 684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   558 PQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPsPAVSVEEPPRREERAASMAGI 637
Cdd:PRK07764  685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP-PEPDDPPDPAGAPAQPPPPPA 763

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 72001342   638 PPPPPTSSRHSPVPRREDRAEFMARSTPPAPGKDRKSlGGRMAM 681
Cdd:PRK07764  764 PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRD-AEEVAM 806
PHA03247 PHA03247
large tegument protein UL36; Provisional
 489-713 6.13e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.94  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   489 PEPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAaqalqhePRQASEPLQNVQPEPSKQASelvqngyAAPQEPRR--ATP 566
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA-------PGRVSRPRRARRLGRAAQAS-------SPPQRPRRraARP 2690

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   567 PPEPLRNELPKHSDllnvSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPPPTSSR 646
Cdd:PHA03247 2691 TVGSLTSLADPPPP----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 72001342   647 HSPVPRREDRAEFMARSTPPAPGKDRKSlggrmamwrnkknkTASMVGPPEPKELPAVVEVEAIVEP 713
Cdd:PHA03247 2767 PAPAPPAAPAAGPPRRLTRPAVASLSES--------------RESLPSPWDPADPPAAVLAPAAALP 2819
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
470-679 1.14e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 53.34  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   470 PLPFVLAAAAAAAKEPETRPEPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASE 549
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   550 LVqngyAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVI-PEPSPAVSVEEPPRRE 628
Cdd:PRK12323  465 AA----AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAeSIPDPATADPDDAFET 540

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 72001342   629 ERAASMAGIPPPPPTSSRHSPVPRREDRAefmARSTPPAPGKDRKSLGGRM 679
Cdd:PRK12323  541 LAPAPAAAPAPRAAAATEPVVAPRPPRAS---ASGLPDMFDGDWPALAARL 588
PHA03247 PHA03247
large tegument protein UL36; Provisional
 485-791 2.39e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 2.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   485 PETRPEPRPEPkqngyhvkqAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQP-EPSKQASELVQNGYAAPQEPR- 562
Cdd:PHA03247 2704 PPPTPEPAPHA---------LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPgGPARPARPPTTAGPPAPAPPAa 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   563 RATPPPeplRNELPKHSDLLNVSKPSEPAePPKPSDAPrEPEVAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPPP 642
Cdd:PHA03247 2775 PAAGPP---RRLTRPAVASLSESRESLPS-PWDPADPP-AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   643 TSSRHSPVPRREDRAEFMARSTPPAPGKDRKSLGGRMAMWRNKKNKTASMVGPPEPKELPavveveaivEPVVEDQPEPV 722
Cdd:PHA03247 2850 LPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP---------QPQAPPPPQPQ 2920

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72001342   723 VSEELKPTEPEPVEPEPMEVEPVVAKEVVEEVVEEVVETQEPWVPLSECSRSSSLELLAELPPPPRASE 791
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 520-721 2.19e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   520 AAAQALQHEPRQASEPLQNVQPEPSKQASELVQ----NGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPK 595
Cdd:PRK07764  594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAApapaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   596 PSDAPREPEVAAAEAVIPEPSPAvsveepPRREERAASMAGIPPPPPTSSRHSPVPRREDRAEFMARSTPPAPGKDRKSL 675
Cdd:PRK07764  674 GGAAPAAPPPAPAPAAPAAPAGA------APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 72001342   676 GGRMAMWRNKKNKTASMVGPPEPKELPAVVEVEAIVEPVVEDQPEP 721
Cdd:PRK07764  748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 484-648 3.79e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.44  E-value: 3.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   484 EPETRPEPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQ-ASELVQNGYAAPQEPR 562
Cdd:PRK07764  638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQpAPAPAATPPAGQADDP 717

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   563 RATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPevAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPPP 642
Cdd:PRK07764  718 AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP--PPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795


                  ....*.
gi 72001342   643 TSSRHS 648
Cdd:PRK07764  796 EDRRDA 801
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 500-641 6.69e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.55  E-value: 6.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   500 YHVKQAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQAselvqngyaAPQEPrraTPPPEPLRNELPKHS 579
Cdd:PRK07994  359 FHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA---------PQQAP---AVPLPETTSQLLAAR 426

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72001342   580 DLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPP 641
Cdd:PRK07994  427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 520-655 8.19e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 8.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   520 AAAQALQhePRQASEPLQNVQPEPS-KQASELVQNGYAAPQEPRRATPPPEPLrnelpkhsdllnVSKPSEPAEPPKPSD 598
Cdd:PRK14951  368 AAAEAAA--PAEKKTPARPEAAAPAaAPVAQAAAAPAPAAAPAAAASAPAAPP------------AAAPPAPVAAPAAAA 433

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   599 APREPEVAAAEAVIPEPSPAVSVEEP---PRREERAASMAGIPPPPPTSSRHSPVPRRED 655
Cdd:PRK14951  434 PAAAPAAAPAAVALAPAPPAQAAPETvaiPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PHA03377 PHA03377
EBNA-3C; Provisional
 368-676 1.06e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 47.35  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   368 PKTKAPEKIPSPPATVTSSTDSLEHMQRKRKKQQETEEQEKAAKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAE 447
Cdd:PHA03377  608 PASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSV 687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   448 KKPPVVveETIRAVPFVFKQEMPLpfvlaaaaaAAKEPETRPE-PRPEPKQNGYHVkQAEPLQAEPPQNGYRLAAAQALQ 526
Cdd:PHA03377  688 FVLPSV--DAGRAQPSEESHLSSM---------SPTQPISHEEqPRYEDPDDPLDL-SLHPDQAPPPSHQAPYSGHEEPQ 755

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   527 H---------EPRQASEPLQNVQpEPSKQASELVQ-NGYAAPQEPRRATP---PPEPLRNELPKHSDLLNVSKPSEPAEP 593
Cdd:PHA03377  756 AqqapypgywEPRPPQAPYLGYQ-EPQAQGVQVSSyPGYAGPWGLRAQHPryrHSWAYWSQYPGHGHPQGPWAPRPPHLP 834

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   594 PK--PSDAPREPEVAAAEAVIPEPSpavsveePPRREERAASMAGIPPPPPTSSR---HSPVPRREDRAEFMARSTPPAP 668
Cdd:PHA03377  835 PQwdGSAGHGQDQVSQFPHLQSETG-------PPRLQLSQVPQLPYSQTLVSSSApswSSPQPRAPIRPIPTRFPPPPMP 907


                  ....*...
gi 72001342   669 GKDRKSLG 676
Cdd:PHA03377  908 LQDSMAVG 915
PHA03247 PHA03247
large tegument protein UL36; Provisional
 554-703 2.16e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   554 GYAAPQEPRRATPPPEPLRNELPkhsdllnVSKPSEPAEPPKPSDAPrePEVAAAEAviPEPSPAVSVEEPPRREERAAS 633
Cdd:PHA03247 2579 EPAVTSRARRPDAPPQSARPRAP-------VDDRGDPRGPAPPSPLP--PDTHAPDP--PPPSPSPAANEPDPHPPPTVP 2647

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   634 MAGIPPPPPTSSRHSPvPRREDRAEFMARSTPPAPGKDRKSLggrmamwRNKKNKTASMVGPPEPKELPA 703
Cdd:PHA03247 2648 PPERPRDDPAPGRVSR-PRRARRLGRAAQASSPPQRPRRRAA-------RPTVGSLTSLADPPPPPPTPE 2709
PHA03379 PHA03379
EBNA-3A; Provisional
 489-725 2.61e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 45.82  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   489 PEPRPEPKQNGYHVKQAEPLQA-EPPQngYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGyAAPQEPRRA-TP 566
Cdd:PHA03379  421 EKPRPEVPQSLETATSHGSAQVpEPPP--VHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLP-GVVQDGRPAcAP 497

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   567 PPEPLRNelpkhsdllnVSKPSEPA--EPPKPSDAPREPEVAAAEaviPEPSPAVSVEEPPRREERAASMAGiPPPPPTS 644
Cdd:PHA03379  498 VPAPAGP----------IVRPWEASlsQVPGVAFAPVMPQPMPVE---PVPVPTVALERPVCPAPPLIAMQG-PGETSGI 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   645 SRHSPVPRREDRAEFMARSTPPAPGKDRKSLGGRMAmwrnkKNKTASM-VGPPEPKELPAVVEVEAIVEPVVEDQPEPVV 723
Cdd:PHA03379  564 VRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEA-----QPYQASVeVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPF 638


                  ..
gi 72001342   724 SE 725
Cdd:PHA03379  639 SQ 640
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 483-665 3.29e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.55  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   483 KEPETRPEPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQAselvqngyAAPqEPR 562
Cdd:PHA03307   59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP--------ASP-PPS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   563 RATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVS---VEEPPRREERAASMAGIPP 639
Cdd:PHA03307  130 PAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSsppAEPPPSTPPAAASPRPPRR 209

                         170       180
                  ....*....|....*....|....*..
gi 72001342   640 PPPTSSRHS-PVPRREDRAEFMARSTP 665
Cdd:PHA03307  210 SSPISASASsPAPAPGRSAADDAGASS 236
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 586-713 3.40e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.48  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   586 KP--SEPAEPPKPSDAPREPEvAAAEAVIPEPSPAVsveePPRREERAASMAGIPPPPPTSSRHSPVPRREDRAEFMARS 663
Cdd:PRK14951  365 KPaaAAEAAAPAEKKTPARPE-AAAPAAAPVAQAAA----APAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 72001342   664 TPPAPGKDRKSLGGRMAMW-RNKKNKTASMVGPPEPKELPAVVEVEAIVEP 713
Cdd:PRK14951  440 AAPAAVALAPAPPAQAAPEtVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
552-721 7.37e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 7.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   552 QNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERA 631
Cdd:PRK12323  368 SGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   632 ASMAGIPPPPPTSSRHSPVPRREDRAEFMARSTPP-APGKDRKSLGGRMAMWRNKKNKTASmVGPPEPKELPAVVEVEAI 710
Cdd:PRK12323  448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARaAPAAAPAPADDDPPPWEELPPEFAS-PAPAQPDAAPAGWVAESI 526

                         170
                  ....*....|.
gi 72001342   711 VEPVVEDQPEP 721
Cdd:PRK12323  527 PDPATADPDDA 537
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
504-668 7.88e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 7.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   504 QAEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLN 583
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   584 VSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAV----SVEEPPRREERAASMAGIPP------PPPTSSRHSPVP-R 652
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAapapADDDPPPWEELPPEFASPAPaqpdaaPAGWVAESIPDPaT 531

                         170
                  ....*....|....*.
gi 72001342   653 REDRAEFMARSTPPAP 668
Cdd:PRK12323  532 ADPDDAFETLAPAPAA 547
PRK11633 PRK11633
cell division protein DedD; Provisional
 543-625 8.61e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 8.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   543 PSKQASELVQNGYAAPQ--EPRRATPPPEPLRNELPKhsdllnVSKP-SEPAEPPKPSDAPrEPEVAAAEAVIPEPSPAV 619
Cdd:PRK11633   67 PPEGAAEAVRAGDAAAPslDPATVAPPNTPVEPEPAP------VEPPkPKPVEKPKPKPKP-QQKVEAPPAPKPEPKPVV 139


                  ....*.
gi 72001342   620 SVEEPP 625
Cdd:PRK11633  140 EEKAAP 145
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 390-670 2.13e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 42.69  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   390 LEHMQRKRKKQQETE---------EQEKA-AKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEKKPPVvvEETIR 459
Cdd:NF033838  190 LELVKEEAKEPRDEEkikqakakvESKKAeATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPK--RRAKR 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   460 AVPfvfkQEMPLPfvlAAAAAAAKEP------ETRPEPRPEPKQNgyhVKQAEPLQAEPPQngyrlaAAQALQHEPRQ-- 531
Cdd:NF033838  268 GVL----GEPATP---DKKENDAKSSdssvgeETLPSPSLKPEKK---VAEAEKKVEEAKK------KAKDQKEEDRRny 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   532 ASEPLQNVQPEPS------KQAS-ELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPE 604
Cdd:NF033838  332 PTNTYKTLELEIAesdvkvKEAElELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDK 411

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72001342   605 VAAAEAVIPEPSPAVSVEEPPRREERAASMAGIPPPPPTSSRHSPVPRREDRAEFMARSTPPAPGK 670
Cdd:NF033838  412 VKEKPAEQPQPAPAPQPEKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEK 477
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 554-669 2.15e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   554 GYAAPQEPRRATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAAS 633
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 72001342   634 MAGIPPPPPTSSRHSPVPRREDRAEFMARSTPPAPG 669
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
482-682 2.62e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   482 AKEPETRPEPRPEPKQNGYHVKQAEPLQaeppqngyrlAAAQALQHEPRQASEPLQNVQPEPSKQASelvqnGYAAPqep 561
Cdd:PRK07003  419 AATRAEAPPAAPAPPATADRGDDAADGD----------APVPAKANARASADSRCDERDAQPPADSG-----SASAP--- 480

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   562 rrATPPPEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPE-PSPAVSVEEPPRR------------- 627
Cdd:PRK07003  481 --ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEaRPPTPAAAAPAARaggaaaaldvlrn 558

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 72001342   628 --------EERAASMAGIPPPPPTSSRHSPVPR--------REDRAEFMARSTPPAPGKDRKSLGGRMAMW 682
Cdd:PRK07003  559 agmrvssdRGARAAAAAKPAAAPAAAPKPAAPRvavqvptpRARAATGDAPPNGAARAEQAAESRGAPPPW 629
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 505-632 3.26e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442349 [Multi-domain]  Cd Length: 298  Bit Score: 41.60  E-value: 3.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342  505 AEPLQAEPPQNGYRLAAAQALQHEPRQASEPLQNVQPEPSKQASElvqngyAAPQEPRRATPPPEPLRNELPKHSDLLNV 584
Cdd:COG3115   36 DKPSKRDVLLDDDGIGEVRVVAAEAPERVEPEASFDAEDEVREPD------QEEVDPLLDDEADIEAAPAEPVRWAGTAA 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 72001342  585 SKPSEPAEPPKPSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAA 632
Cdd:COG3115  110 AVEPAPEQEAYEEAGPAGESAEQEDAPAEEPEAEAPAEEALAAELCAE 157
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 398-448 3.94e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 41.72  E-value: 3.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 72001342   398 KKQQETEEQEKAAKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEK 448
Cdd:PRK09510  168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
529-724 4.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 4.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   529 PRQASEPLqnVQPEPSKQASELVQNGYAAPQeprrATPPPEPLRNEL-PKHSDLLNVSKPSEPAEPPKPSDAPREPEVAA 607
Cdd:PRK12323  375 ATAAAAPV--AQPAPAAAAPAAAAPAPAAPP----AAPAAAPAAAAAaRAVAAAPARRSPAPEALAAARQASARGPGGAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   608 AEAVIPEPSPAVSVeEPPRREERAASMAGIPPPPPTSSRHSPVPRREDRAEFM-ARSTPPAPGKDRKSLGgrMAMWRNKK 686
Cdd:PRK12323  449 APAPAPAAAPAAAA-RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEeLPPEFASPAPAQPDAA--PAGWVAES 525

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 72001342   687 NKTASMVGPPEPKELPAVVEVEAIVePVVEDQPEPVVS 724
Cdd:PRK12323  526 IPDPATADPDDAFETLAPAPAAAPA-PRAAAATEPVVA 562
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 398-449 4.49e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 41.33  E-value: 4.49e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 72001342   398 KKQQETEEQEKAAKKAKRHQEERERQKIEAEKRKKAILEEAAKVTRPPAEKK 449
Cdd:PRK09510  184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 484-635 4.75e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 4.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   484 EPETRPEPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAAQALQHEPrqASEPLQNVQPEPSKQASELVQNGYAAPQEPRR 563
Cdd:PRK07764  661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA--ATPPAGQADDPAAQPPQAAQGASAPSPAADDP 738

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72001342   564 ATPPPEPlrNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEAVIPEPsPAVSVEEPPRREERAASMA 635
Cdd:PRK07764  739 VPLPPEP--DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAED-DAPSMDDEDRRDAEEVAME 807
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 586-671 5.69e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.33  E-value: 5.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   586 KPSEPAEPPK-PSDAPREPEVAAAEAVIPEPSPAVSVEEPPRREERAASmagiPPPPPTSSRHSPVPRREDRAEFMARST 664
Cdd:PRK14950  370 KPTAAAPSPVrPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA----PPVPHTPESAPKLTRAAIPVDEKPKYT 445


                  ....*..
gi 72001342   665 PPAPGKD 671
Cdd:PRK14950  446 PPAPPKE 452
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 483-702 6.62e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.07  E-value: 6.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   483 KEPETRPEPRPEPKQNGYHVKQAEPLQAEPPQngyrlaaaqalqhEPRQASEPLqnvqpepskqaselvqNGYAAPQEPR 562
Cdd:PLN03209  331 KESDAADGPKPVPTKPVTPEAPSPPIEEEPPQ-------------PKAVVPRPL----------------SPYTAYEDLK 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342   563 RATPP-PEPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPR--EPEVAAAEAVIPEP-SPAVSVEE--PPRREERAASMAG 636
Cdd:PLN03209  382 PPTSPiPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNvpEVEPAQVEAKKTRPlSPYARYEDlkPPTSPSPTAPTGV 461

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72001342   637 IPPPPPTSSrhspVPRREDRAEFMARSTPPAPGKDRKSLGGRMAMWRNKKNKTASMVGPPEPKELP 702
Cdd:PLN03209  462 SPSVSSTSS----VPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAP 523
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
 369-465 6.68e-03

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 41.14  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72001342    369 KTKAPEKIPSPPATVTSSTDSLEHMQRKR---KKQQETEEQEKAAKKAKRH-----------QEERERQKIEAEKRKKAI 434
Cdd:pfam05262  253 KQQEAKNLPKPADTSSPKEDKQVAENQKReieKAQIEIKKNDEEALKAKDHkafdlkqeskaSEKEAEDKELEAQKKREP 332

                           90       100       110
                   ....*....|....*....|....*....|.
gi 72001342    435 LEEAAKVTRPPAEKKPPVVVEETIRAVPFVF 465
Cdd:pfam05262  333 VAEDLQKTKPQVEAQPTSLNEDAIDSSNPVY 363
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 393-449 7.26e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 40.60  E-value: 7.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72001342    393 MQRKRKKQQETEEQEKAAKKA--KRHQEERERQKIEAEKRKKAI-------LEEAAKVTRPPAEKK 449
Cdd:TIGR02794   94 LEQRAAAEKAAKQAEQAAKQAeeKQKQAEEAKAKQAAEAKAKAEaeaerkaKEEAAKQAEEEAKAK 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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