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Conserved domains on  [gi|49457853|ref|NP_001001881|]
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UPF0524 protein C3orf70 homolog [Mus musculus]

Protein Classification

UPF0524 family protein( domain architecture ID 11239417)

UPF0524 family protein similar to Homo sapiens protein C3orf70

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UPF0524 pfam15823
UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this ...
12-248 1.32e-148

UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this family are typically between 183 and 250 amino acids in length. The function is not known.


:

Pssm-ID: 464895  Cd Length: 239  Bit Score: 414.23  E-value: 1.32e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    12 KSEKVDEAQALARSCAARrPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPTN 91
Cdd:pfam15823   1 KSEKLDEAQALARSCAGR-PDFLPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTNVCQLPSTAVPAAPSEHTN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    92 TIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQQaPHSQKMSPEEVSAHDA----LI 167
Cdd:pfam15823  80 TIQLSISLAERFLKTAPVFQAPPCPESPKYCVISDLFIDDYQVKRINGKMCYVQRPP-PPVPEPRPQPASKQPAavvqLV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853   168 SKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETT 247
Cdd:pfam15823 159 SEKAKGPKMDHCSSPSSSEDSGINALGLHYLESCDEEEEEDDELSTDGDSSPGSLWDQDECTLLSPSKSMVEIIEKIETT 238

                  .
gi 49457853   248 V 248
Cdd:pfam15823 239 V 239
 
Name Accession Description Interval E-value
UPF0524 pfam15823
UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this ...
12-248 1.32e-148

UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this family are typically between 183 and 250 amino acids in length. The function is not known.


Pssm-ID: 464895  Cd Length: 239  Bit Score: 414.23  E-value: 1.32e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    12 KSEKVDEAQALARSCAARrPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPTN 91
Cdd:pfam15823   1 KSEKLDEAQALARSCAGR-PDFLPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTNVCQLPSTAVPAAPSEHTN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    92 TIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQQaPHSQKMSPEEVSAHDA----LI 167
Cdd:pfam15823  80 TIQLSISLAERFLKTAPVFQAPPCPESPKYCVISDLFIDDYQVKRINGKMCYVQRPP-PPVPEPRPQPASKQPAavvqLV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853   168 SKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETT 247
Cdd:pfam15823 159 SEKAKGPKMDHCSSPSSSEDSGINALGLHYLESCDEEEEEDDELSTDGDSSPGSLWDQDECTLLSPSKSMVEIIEKIETT 238

                  .
gi 49457853   248 V 248
Cdd:pfam15823 239 V 239
 
Name Accession Description Interval E-value
UPF0524 pfam15823
UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this ...
12-248 1.32e-148

UPF0524 of C3orf70; UPF0524 is a family of proteins found in eukaryotes. Proteins in this family are typically between 183 and 250 amino acids in length. The function is not known.


Pssm-ID: 464895  Cd Length: 239  Bit Score: 414.23  E-value: 1.32e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    12 KSEKVDEAQALARSCAARrPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPTN 91
Cdd:pfam15823   1 KSEKLDEAQALARSCAGR-PDFLPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTNVCQLPSTAVPAAPSEHTN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853    92 TIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQQaPHSQKMSPEEVSAHDA----LI 167
Cdd:pfam15823  80 TIQLSISLAERFLKTAPVFQAPPCPESPKYCVISDLFIDDYQVKRINGKMCYVQRPP-PPVPEPRPQPASKQPAavvqLV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49457853   168 SKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETT 247
Cdd:pfam15823 159 SEKAKGPKMDHCSSPSSSEDSGINALGLHYLESCDEEEEEDDELSTDGDSSPGSLWDQDECTLLSPSKSMVEIIEKIETT 238

                  .
gi 49457853   248 V 248
Cdd:pfam15823 239 V 239
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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