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Conserved domains on  [gi|47824872|ref|NP_001001449|]
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uncharacterized protein LOC380878 [Mus musculus]

Protein Classification

DUF1438 domain-containing protein( domain architecture ID 10538054)

DUF1438 domain-containing protein similar to Mus musculus 2-cell-stage, variable group, member 1 (Tcstv1) and 3 (Tcstv3), which play a role in regulation of telomere lengths

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1438 pfam07270
Protein of unknown function (DUF1438); This family consists of several hypothetical proteins ...
 1-150 4.34e-96

Protein of unknown function (DUF1438); This family consists of several hypothetical proteins of around 170 residues in length which appear to be mouse specific. The function of this family is unknown.


:

Pssm-ID: 284642  Cd Length: 151  Bit Score: 274.17  E-value: 4.34e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47824872     1 MKRFCPCLVQDTSHSEEHALQTSQELPALRPRYSRSEPQCFCGEPNHCHEDDWIVDWEPYYLpCVLESWDCLRYHSGLNC 80
Cdd:pfam07270   1 MKQSFPSFVKDTSDSEEHALPSAQVLPAQSTRCSKSETLCFGKEQSHCSEDGWIADWDLYSF-CVFESVDYLRSYRRLNC 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47824872    81 AMKKGTEVFQIESQRGPQVFPGDMDN--DKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPKHLG 150
Cdd:pfam07270  80 AMKKGTEVFQSESQREPQVSPGDVDNnkDKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPRHLG 151
 
Name Accession Description Interval E-value
DUF1438 pfam07270
Protein of unknown function (DUF1438); This family consists of several hypothetical proteins ...
 1-150 4.34e-96

Protein of unknown function (DUF1438); This family consists of several hypothetical proteins of around 170 residues in length which appear to be mouse specific. The function of this family is unknown.


Pssm-ID: 284642  Cd Length: 151  Bit Score: 274.17  E-value: 4.34e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47824872     1 MKRFCPCLVQDTSHSEEHALQTSQELPALRPRYSRSEPQCFCGEPNHCHEDDWIVDWEPYYLpCVLESWDCLRYHSGLNC 80
Cdd:pfam07270   1 MKQSFPSFVKDTSDSEEHALPSAQVLPAQSTRCSKSETLCFGKEQSHCSEDGWIADWDLYSF-CVFESVDYLRSYRRLNC 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47824872    81 AMKKGTEVFQIESQRGPQVFPGDMDN--DKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPKHLG 150
Cdd:pfam07270  80 AMKKGTEVFQSESQREPQVSPGDVDNnkDKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPRHLG 151
 
Name Accession Description Interval E-value
DUF1438 pfam07270
Protein of unknown function (DUF1438); This family consists of several hypothetical proteins ...
 1-150 4.34e-96

Protein of unknown function (DUF1438); This family consists of several hypothetical proteins of around 170 residues in length which appear to be mouse specific. The function of this family is unknown.


Pssm-ID: 284642  Cd Length: 151  Bit Score: 274.17  E-value: 4.34e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47824872     1 MKRFCPCLVQDTSHSEEHALQTSQELPALRPRYSRSEPQCFCGEPNHCHEDDWIVDWEPYYLpCVLESWDCLRYHSGLNC 80
Cdd:pfam07270   1 MKQSFPSFVKDTSDSEEHALPSAQVLPAQSTRCSKSETLCFGKEQSHCSEDGWIADWDLYSF-CVFESVDYLRSYRRLNC 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47824872    81 AMKKGTEVFQIESQRGPQVFPGDMDN--DKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPKHLG 150
Cdd:pfam07270  80 AMKKGTEVFQSESQREPQVSPGDVDNnkDKDTEEPDQPLPSLLREKGLELETCDGGDCPDQDPASDSPRHLG 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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