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Conserved domains on  [gi|2217263369|ref|XP_047297658|]
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kinesin-like protein KIF2C isoform X1 [Homo sapiens]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
249-577 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 328
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 408
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 486
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 487 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 566
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 2217263369 567 LNTLRYADRVK 577
Cdd:cd01367   318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
249-577 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 328
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 408
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 486
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 487 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 566
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 2217263369 567 LNTLRYADRVK 577
Cdd:cd01367   318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
255-578 6.87e-136

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 403.11  E-value: 6.87e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 255 RKRPLNKQELAKKEIDVISipskCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 334
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVS----VESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 335 CFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQpCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKL 410
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 411 RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------MHGKFSLV 482
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 483 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISPGIS 561
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 2217263369 562 SCEYTLNTLRYADRVKE 578
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
249-579 5.23e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 364.97  E-value: 5.23e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  249 RICVCVRKRPLNKQELAKKEIDVISIPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 325
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  326 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVF-LLKNQPcyRKLGLEVYVTFFEIYNGKLFDLL 404
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFeKIDKRE--EGWQFSVKVSYLEIYNEKIRDLL 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  405 NK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------H 476
Cdd:smart00129 146 NPsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNsssgsgkA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  477 GKFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIA 554
Cdd:smart00129 226 SKLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIA 303
                          330       340
                   ....*....|....*....|....*
gi 2217263369  555 TISPGISSCEYTLNTLRYADRVKEL 579
Cdd:smart00129 304 NVSPSSSNLEETLSTLRFASRAKEI 328
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
252-678 1.61e-61

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.14  E-value: 1.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQELAKKEIDVISIPSK--CLLLVHEPKLKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFE 329
Cdd:COG5059     9 LKSRLSSRNEKSVSDIKSTIRIIPGElgERLINTSKKSHVSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFlLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL-NKKA 408
Cdd:COG5059    88 GYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVD 483
Cdd:COG5059   161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 484 LAGNERGADTssADRQTRM-EGAEINKSLLALKECIRALGQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 560
Cdd:COG5059   241 LAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 561 SSCEYTLNTLRYADRVKELSPHSGPSGEQLIQMETEEMEACSNGALIPGNLSKEEEELSSQMSSFNE--AMTQIRELEEK 638
Cdd:COG5059   318 NSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGifAYMQSLKKETE 397
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2217263369 639 AMEE-----LKEIIQQGPDWLELSEMTEQpdyDLETFVNKAESAL 678
Cdd:COG5059   398 TLKSridliMKSIISGTFERKKLLKEEGW---KYKSTLQFLRIEI 439
PLN03188 PLN03188
kinesin-12 family protein; Provisional
252-577 7.40e-36

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.85  E-value: 7.40e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  252 VCVRKRPLNKQELAKKEIDVISIPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 331
Cdd:PLN03188   102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  332 KATCFAYGQTGSGKTHTMGG--------DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 403
Cdd:PLN03188   166 NSSVFAYGQTGSGKTYTMWGpanglleeHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  404 LNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHG--- 477
Cdd:PLN03188   246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  478 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 548
Cdd:PLN03188   326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                          330       340
                   ....*....|....*....|....*....
gi 2217263369  549 RTCMIATISPGISSCEYTLNTLRYADRVK 577
Cdd:PLN03188   404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
249-577 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 328
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 408
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 486
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 487 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 566
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 2217263369 567 LNTLRYADRVK 577
Cdd:cd01367   318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
255-578 6.87e-136

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 403.11  E-value: 6.87e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 255 RKRPLNKQELAKKEIDVISipskCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 334
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVS----VESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 335 CFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQpCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKL 410
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 411 RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------MHGKFSLV 482
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 483 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISPGIS 561
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 2217263369 562 SCEYTLNTLRYADRVKE 578
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
249-577 5.92e-125

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 375.05  E-value: 5.92e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQElAKKEIDVISIPSKCLLLVHEPKlkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 328
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPK-----NRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDLSGkaqnaSKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN--K 406
Cdd:cd00106    75 EGYNGTIFAYGQTGSGKTYTMLGPDPE-----QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 407 KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------HGKF 479
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 480 SLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISP 558
Cdd:cd00106   230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQNkHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                         330
                  ....*....|....*....
gi 2217263369 559 GISSCEYTLNTLRYADRVK 577
Cdd:cd00106   308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
249-579 5.23e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 364.97  E-value: 5.23e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  249 RICVCVRKRPLNKQELAKKEIDVISIPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 325
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  326 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVF-LLKNQPcyRKLGLEVYVTFFEIYNGKLFDLL 404
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFeKIDKRE--EGWQFSVKVSYLEIYNEKIRDLL 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  405 NK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------H 476
Cdd:smart00129 146 NPsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNsssgsgkA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  477 GKFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIA 554
Cdd:smart00129 226 SKLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIA 303
                          330       340
                   ....*....|....*....|....*
gi 2217263369  555 TISPGISSCEYTLNTLRYADRVKEL 579
Cdd:smart00129 304 NVSPSSSNLEETLSTLRFASRAKEI 328
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
249-579 5.55e-91

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 287.70  E-value: 5.55e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKcLLLVHEPKLKVDLTKYLEN------------QAFCFDFAFDETASNEVVY 316
Cdd:cd01370     1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDN-HMLVFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 317 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGkaqnasKGIYAMASRDVF----LLKNQPCYrklglEVYVTF 392
Cdd:cd01370    80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQE------PGLMVLTMKELFkrieSLKDEKEF-----EVSMSY 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 393 FEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA 471
Cdd:cd01370   149 LEIYNETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQ 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 472 KGR--------MHGKFSLVDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNK---AHTPFRESKLTQVL 539
Cdd:cd01370   229 QDKtasinqqvRQGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALADPGkknKHIPYRDSKLTRLL 306
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2217263369 540 RDSfIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 579
Cdd:cd01370   307 KDS-LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
250-579 6.82e-80

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 257.65  E-value: 6.82e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 250 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 329
Cdd:cd01374     2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPP-----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRKLGLEvyVTFFEIYNGKLFDLLN-KKA 408
Cdd:cd01374    71 GYNGTIFAYGQTSSGKTFTMSGD------EDEPGIIPLAIRDIFSKIQDTPDREFLLR--VSYLEIYNEKINDLLSpTSQ 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHGK------FS 480
Cdd:cd01374   143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGtvrvstLN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 481 LVDLAGNERGADT-SSADRqtRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIATIS 557
Cdd:cd01374   223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                         330       340
                  ....*....|....*....|..
gi 2217263369 558 PGISSCEYTLNTLRYADRVKEL 579
Cdd:cd01374   300 PAESHVEETLNTLKFASRAKKI 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
249-577 1.02e-79

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 258.82  E-value: 1.02e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAF------DET-ASNEVVYRFTA 320
Cdd:cd01365     2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYwshdseDPNyASQEQVYEDLG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 321 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKL 400
Cdd:cd01365    82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 401 FDLLNKKAK-----LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--- 472
Cdd:cd01365   156 RDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrhd 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 473 ------GRMHGKFSLVDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT--------PFRESKLTQV 538
Cdd:cd01365   236 aetnltTEKVSKISLVDLAGSER-ASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssfiPYRDSVLTWL 314
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2217263369 539 LRDSfIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 577
Cdd:cd01365   315 LKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
252-575 1.17e-77

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 252.64  E-value: 1.17e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQELAKKEIDVISIPSKclllvhEPKLKVDltkylENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 331
Cdd:cd01372     5 VAVRVRPLLPKEIIEGCRICVSFVPG------EPQVTVG-----TDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 332 KATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVF----LLKNQPCYrklglEVYVTFFEIYNGKLFDLLN-- 405
Cdd:cd01372    74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkkieKKKDTFEF-----QLKVSFLEIYNEEIRDLLDpe 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 406 --KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------- 474
Cdd:cd01372   149 tdKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsa 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 475 ------MHGKFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALG---QNKAHTPFRESKLTQVLRDSfIG 545
Cdd:cd01372   229 ddknstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LG 306
                         330       340       350
                  ....*....|....*....|....*....|
gi 2217263369 546 ENSRTCMIATISPGISSCEYTLNTLRYADR 575
Cdd:cd01372   307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
252-577 1.52e-71

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 236.20  E-value: 1.52e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKV-DLTKylenqAFCFDFAFDETASNEVVYRFTARPLVQTIFE 329
Cdd:cd01371     5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATAnEPPK-----TFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGDlsgKAQNASKGIYAMASRDVF--LLKNQPCYRKLgleVYVTFFEIYNGKLFDLLNK- 406
Cdd:cd01371    80 GYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFghIARSQNNQQFL---VRVSYLEIYNEEIRDLLGKd 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 407 -KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA-----KGRMH---G 477
Cdd:cd01371   154 qTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvG 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 478 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSfIGENSRTCMIATI 556
Cdd:cd01371   234 KLNLVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKStHIPYRDSKLTRLLQDS-LGGNSKTVMCANI 311
                         330       340
                  ....*....|....*....|.
gi 2217263369 557 SPGISSCEYTLNTLRYADRVK 577
Cdd:cd01371   312 GPADYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
250-577 9.71e-71

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 233.64  E-value: 9.71e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 250 ICVCVRKRPLNKQELAKkEIDVISIPSkclllvhEPKLKVDLT-KYLENQAFCFDFAFDETASNEVVYRfTARPLVQTIF 328
Cdd:cd01366     4 IRVFCRVRPLLPSEENE-DTSHITFPD-------EDGQTIELTsIGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA 408
Cdd:cd01366    75 DGYNVCIFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGN 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 ----KLRVLEDG-KQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----RMHGK 478
Cdd:cd01366   149 apqkKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNlqtgeISVGK 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 479 FSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIATISP 558
Cdd:cd01366   229 LNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 306
                         330
                  ....*....|....*....
gi 2217263369 559 GISSCEYTLNTLRYADRVK 577
Cdd:cd01366   307 AESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
247-577 9.62e-69

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 229.13  E-value: 9.62e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 247 EHRICVCVRKRPLNKQELAKKEIDVISI--PSKCLLLVHEPKLKVDLTKylenqAFCFDFAFDETASNEVVYRFTARPLV 324
Cdd:cd01364     1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 325 QTIFEGGKATCFAYGQTGSGKTHTMGGDLS-----GKAQNASKGIYAMASRDVFllknqPCYRKLGLE--VYVTFFEIYN 397
Cdd:cd01364    76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSpneeyTWELDPLAGIIPRTLHQLF-----EKLEDNGTEysVKVSYLEIYN 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 398 GKLFDLL----NKKAKLRVLED--GKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA 471
Cdd:cd01364   151 EELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 472 KGRMH--------GKFSLVDLAGNErGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSf 543
Cdd:cd01364   231 KETTIdgeelvkiGKLNLVDLAGSE-NIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDS- 308
                         330       340       350
                  ....*....|....*....|....*....|....
gi 2217263369 544 IGENSRTCMIATISPGISSCEYTLNTLRYADRVK 577
Cdd:cd01364   309 LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
250-577 1.12e-67

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 225.67  E-value: 1.12e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 250 ICVCVRKRPLNKQELAKKEIDVISIPskclllvhePKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 329
Cdd:cd01369     4 IKVVCRFRPLNELEVLQGSKSIVKFD---------PEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGdlsGKAQNASKGIYAMASRDVF--LLKNQpcyRKLGLEVYVTFFEIYNGKLFDLLN-K 406
Cdd:cd01369    75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFetIYSMD---ENLEFHVKVSYFEIYMEKIRDLLDvS 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 407 KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR-----MHGKFSL 481
Cdd:cd01369   149 KTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVetekkKSGKLYL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 482 VDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 560
Cdd:cd01369   229 VDLAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTDgKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSS 306
                         330
                  ....*....|....*..
gi 2217263369 561 SSCEYTLNTLRYADRVK 577
Cdd:cd01369   307 YNESETLSTLRFGQRAK 323
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
252-678 1.61e-61

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.14  E-value: 1.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQELAKKEIDVISIPSK--CLLLVHEPKLKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFE 329
Cdd:COG5059     9 LKSRLSSRNEKSVSDIKSTIRIIPGElgERLINTSKKSHVSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFlLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL-NKKA 408
Cdd:COG5059    88 GYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 409 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVD 483
Cdd:COG5059   161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 484 LAGNERGADTssADRQTRM-EGAEINKSLLALKECIRALGQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 560
Cdd:COG5059   241 LAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 561 SSCEYTLNTLRYADRVKELSPHSGPSGEQLIQMETEEMEACSNGALIPGNLSKEEEELSSQMSSFNE--AMTQIRELEEK 638
Cdd:COG5059   318 NSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGifAYMQSLKKETE 397
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2217263369 639 AMEE-----LKEIIQQGPDWLELSEMTEQpdyDLETFVNKAESAL 678
Cdd:COG5059   398 TLKSridliMKSIISGTFERKKLLKEEGW---KYKSTLQFLRIEI 439
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
254-577 1.96e-58

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 200.88  E-value: 1.96e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 254 VRKRPLNKQELAKKEIDvisiPSKCLLLVHEPKlkvDLTK-YLENQAFCFDFAFD---ETASNEVVYRFTARPLVQTIFE 329
Cdd:cd01375     6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQQEDWSFKFDgvlHNASQELVYETVAKDVVSSALA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 330 GGKATCFAYGQTGSGKTHTMGGdlsGKAQNASKGIYAMASRDVF-LLKNQPCYrklGLEVYVTFFEIYNGKLFDLLNKK- 407
Cdd:cd01375    79 GYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFrMIEERPTK---AYTVHVSYLEIYNEQLYDLLSTLp 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 408 ------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR------- 474
Cdd:cd01375   153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 475 MHGKFSLVDLAGNERGADTSSADrQTRMEGAEINKSLLALKECIRALG-QNKAHTPFRESKLTQVLRDSfIGENSRTCMI 553
Cdd:cd01375   233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSdKDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                         330       340
                  ....*....|....*....|....
gi 2217263369 554 ATISPGISSCEYTLNTLRYADRVK 577
Cdd:cd01375   311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
252-573 1.51e-54

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 190.68  E-value: 1.51e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPK-----LKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQT 326
Cdd:cd01368     5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKgsaanKSERNGGQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 327 IFEGGKATCFAYGQTGSGKTHTMGGDLSGkaqnasKGIYAMaSRDVfLLKNQPCYrklglEVYVTFFEIYNGKLFDLLN- 405
Cdd:cd01368    84 LLHGKNGLLFTYGVTNSGKTYTMQGSPGD------GGILPR-SLDV-IFNSIGGY-----SVFVSYIEIYNEYIYDLLEp 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 406 -------KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQI-ILRAKGRMHG 477
Cdd:cd01368   151 spssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSDG 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 478 ------------KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQN-----KAHTPFRESKLTQVLR 540
Cdd:cd01368   231 dvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLFQ 309
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2217263369 541 DSFIGEnSRTCMIATISPGISSCEYTLNTLRYA 573
Cdd:cd01368   310 NYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
249-577 5.34e-54

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 188.48  E-value: 5.34e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 249 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPklkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 328
Cdd:cd01376     1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 329 EGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRklgLEVYVTFFEIYNGKLFDLLN-KK 407
Cdd:cd01376    75 EGQNATVFAYGSTGAGKTFTMLGS------PEQPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEpAS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 408 AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM------HGKFSL 481
Cdd:cd01376   146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 482 VDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 560
Cdd:cd01376   226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                         330
                  ....*....|....*..
gi 2217263369 561 SSCEYTLNTLRYADRVK 577
Cdd:cd01376   303 TFYQDTLSTLNFAARSR 319
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
248-577 2.06e-53

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 187.72  E-value: 2.06e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 248 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVdltkylenqaFCFDFAFDETASNEVVYRFTARPLVQTI 327
Cdd:cd01373     1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKT----------FTFDHVADSNTNQESVFQSVGKPIVESC 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 328 FEGGKATCFAYGQTGSGKTHTMGGDlSGKAQNASKGIYAMASRD----VFLLKNQPCYRKLGLEVYV--TFFEIYNGKLF 401
Cdd:cd01373    71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPRIfeylFSLIQREKEKAGEGKSFLCkcSFLEIYNEQIY 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 402 DLLNK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG--- 477
Cdd:cd01373   150 DLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfvn 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 478 ----KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN----KAHTPFRESKLTQVLRDSfIGENSR 549
Cdd:cd01373   230 irtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALVDVahgkQRHVCYRDSKLTFLLRDS-LGGNAK 307
                         330       340
                  ....*....|....*....|....*...
gi 2217263369 550 TCMIATISPGISSCEYTLNTLRYADRVK 577
Cdd:cd01373   308 TAIIANVHPSSKCFGETLSTLRFAQRAK 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
252-577 7.40e-36

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.85  E-value: 7.40e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  252 VCVRKRPLNKQELAKKEIDVISIPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 331
Cdd:PLN03188   102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  332 KATCFAYGQTGSGKTHTMGG--------DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 403
Cdd:PLN03188   166 NSSVFAYGQTGSGKTYTMWGpanglleeHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  404 LNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHG--- 477
Cdd:PLN03188   246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369  478 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 548
Cdd:PLN03188   326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                          330       340
                   ....*....|....*....|....*....
gi 2217263369  549 RTCMIATISPGISSCEYTLNTLRYADRVK 577
Cdd:PLN03188   404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
252-558 3.89e-11

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 62.36  E-value: 3.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 252 VCVRKRPLNKQElakkeidvISIPSKCLLlvhepklkvdltkylenqafcFDFAFDETASNEVVYRfTARPLVQTIFEGG 331
Cdd:cd01363     1 VLVRVNPFKELP--------IYRDSKIIV---------------------FYRGFRRSESQPHVFA-IADPAYQSMLDGY 50
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 332 KATC-FAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMasrdvfllknqpcyrKLGLEVYVTffeiyngklfdllnkkakl 410
Cdd:cd01363    51 NNQSiFAYGESGAGKTETMKGVIPYLASVAFNGINKG---------------ETEGWVYLT------------------- 96
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 411 rvledgkqqvqvvglqEHLVNSADDVIKMIDMGSACRTSgQTFANSNSSRSHACFQIilrakgrmhgkfsLVDLAGNERg 490
Cdd:cd01363    97 ----------------EITVTLEDQILQANPILEAFGNA-KTTRNENSSRFGKFIEI-------------LLDIAGFEI- 145
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217263369 491 adtssadrqtrmegaeINKSLLALKECIRAlgqnkahtpfreskltqvlrdsfigenSRTCMIATISP 558
Cdd:cd01363   146 ----------------INESLNTLMNVLRA---------------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
245-404 4.66e-08

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 52.61  E-value: 4.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 245 IEEHR--ICVCVRKRPLNKQELAkkeidvISIPSKCLLLVHEPKlkvdltkylENQAFCFDFAFDETASNEVVYRFTaRP 322
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217263369 323 LVQTIFEGGKATCFAYGQTGSGKTHTMGGdlsgkaqNASKGIYAMASRdvflLKNQPCYrklglEVYVTFFEIYNGKLFD 402
Cdd:pfam16796  79 LVQSCLDGYNVCIFAYGQTGSGSNDGMIP-------RAREQIFRFISS----LKKGWKY-----TIELQFVEIYNESSQD 142

                  ..
gi 2217263369 403 LL 404
Cdd:pfam16796 143 LL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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