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Conserved domains on  [gi|1907086943|ref|XP_036013226|]
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CLOCK-interacting pacemaker isoform X2 [Mus musculus]

Protein Classification

CiPC domain-containing protein( domain architecture ID 12174954)

CiPC domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CiPC pfam15800
Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The ...
52-388 1.80e-138

Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The protein was identified in sheep as a gene-orthologue involved in regulation of the circadian clock. Proteins in this family are typically between 220 and 400 amino acids in length.


:

Pssm-ID: 464879  Cd Length: 338  Bit Score: 399.15  E-value: 1.80e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943  52 SDKDSGFSDGSSECLSSAEQMESEDMLSALGCKREDKRRQPSKAADTALPTLPPMVVMKSVLVKQGSSSSQLQSWTVQPS 131
Cdd:pfam15800   1 SDKDSGFSDGSSEYLSAAEQTDSEDMLNTLSWSLNSKPRQNSPIVSGSFPGLSPMVVMKNVLVKQGSSSSALQSWGVQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 132 FEVISAQPQLFVLHPPVPSPVSSCQTGEKKSESRNYLPILNSYTKIAPHPGKRG--LNSEDRGTSGVSKKLCTERPGPSL 209
Cdd:pfam15800  81 FEVIPAQPQLLFLQPPVPPPISPSPSGDKKKDSRNYLPILNSYPKIAPHPGKRGlsLTPEERGEPSVSKRVCTERHRVSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 210 SSSEPAKTGRVLSSPSTPAPPSSkltEDSTLQGVPSLGAGGSPQTL---QPVSSSHVAKAPSLTLASPASPVCASDSTLH 286
Cdd:pfam15800 161 SSAGRTSRHVPSSSPSRNFPPSA---QDSNSQSSSSLLASGSPSTLeeiHHTSSDTHKKESPLTPSSPSPPLSTSSPSPS 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 287 GLESSSPLSPLSASYTSPlWAAEHLCRSPDIFSEQRQNKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQAELDQLK 366
Cdd:pfam15800 238 STESFLPPSPPSAPISSP-ADPGQKPESPGSVLEQRQSKHKRFQNTLVILHKSGLLGITLKTKELIRQNQATQRELDRLK 316
                         330       340
                  ....*....|....*....|..
gi 1907086943 367 EQTQMFIEATKSRAPQAWAKLQ 388
Cdd:pfam15800 317 EQTQLFVEAIQSNAPQAWAKLQ 338
 
Name Accession Description Interval E-value
CiPC pfam15800
Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The ...
52-388 1.80e-138

Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The protein was identified in sheep as a gene-orthologue involved in regulation of the circadian clock. Proteins in this family are typically between 220 and 400 amino acids in length.


Pssm-ID: 464879  Cd Length: 338  Bit Score: 399.15  E-value: 1.80e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943  52 SDKDSGFSDGSSECLSSAEQMESEDMLSALGCKREDKRRQPSKAADTALPTLPPMVVMKSVLVKQGSSSSQLQSWTVQPS 131
Cdd:pfam15800   1 SDKDSGFSDGSSEYLSAAEQTDSEDMLNTLSWSLNSKPRQNSPIVSGSFPGLSPMVVMKNVLVKQGSSSSALQSWGVQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 132 FEVISAQPQLFVLHPPVPSPVSSCQTGEKKSESRNYLPILNSYTKIAPHPGKRG--LNSEDRGTSGVSKKLCTERPGPSL 209
Cdd:pfam15800  81 FEVIPAQPQLLFLQPPVPPPISPSPSGDKKKDSRNYLPILNSYPKIAPHPGKRGlsLTPEERGEPSVSKRVCTERHRVSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 210 SSSEPAKTGRVLSSPSTPAPPSSkltEDSTLQGVPSLGAGGSPQTL---QPVSSSHVAKAPSLTLASPASPVCASDSTLH 286
Cdd:pfam15800 161 SSAGRTSRHVPSSSPSRNFPPSA---QDSNSQSSSSLLASGSPSTLeeiHHTSSDTHKKESPLTPSSPSPPLSTSSPSPS 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 287 GLESSSPLSPLSASYTSPlWAAEHLCRSPDIFSEQRQNKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQAELDQLK 366
Cdd:pfam15800 238 STESFLPPSPPSAPISSP-ADPGQKPESPGSVLEQRQSKHKRFQNTLVILHKSGLLGITLKTKELIRQNQATQRELDRLK 316
                         330       340
                  ....*....|....*....|..
gi 1907086943 367 EQTQMFIEATKSRAPQAWAKLQ 388
Cdd:pfam15800 317 EQTQLFVEAIQSNAPQAWAKLQ 338
 
Name Accession Description Interval E-value
CiPC pfam15800
Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The ...
52-388 1.80e-138

Clock interacting protein circadian; CiPC is a family of proteins found in eukaryotes. The protein was identified in sheep as a gene-orthologue involved in regulation of the circadian clock. Proteins in this family are typically between 220 and 400 amino acids in length.


Pssm-ID: 464879  Cd Length: 338  Bit Score: 399.15  E-value: 1.80e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943  52 SDKDSGFSDGSSECLSSAEQMESEDMLSALGCKREDKRRQPSKAADTALPTLPPMVVMKSVLVKQGSSSSQLQSWTVQPS 131
Cdd:pfam15800   1 SDKDSGFSDGSSEYLSAAEQTDSEDMLNTLSWSLNSKPRQNSPIVSGSFPGLSPMVVMKNVLVKQGSSSSALQSWGVQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 132 FEVISAQPQLFVLHPPVPSPVSSCQTGEKKSESRNYLPILNSYTKIAPHPGKRG--LNSEDRGTSGVSKKLCTERPGPSL 209
Cdd:pfam15800  81 FEVIPAQPQLLFLQPPVPPPISPSPSGDKKKDSRNYLPILNSYPKIAPHPGKRGlsLTPEERGEPSVSKRVCTERHRVSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 210 SSSEPAKTGRVLSSPSTPAPPSSkltEDSTLQGVPSLGAGGSPQTL---QPVSSSHVAKAPSLTLASPASPVCASDSTLH 286
Cdd:pfam15800 161 SSAGRTSRHVPSSSPSRNFPPSA---QDSNSQSSSSLLASGSPSTLeeiHHTSSDTHKKESPLTPSSPSPPLSTSSPSPS 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907086943 287 GLESSSPLSPLSASYTSPlWAAEHLCRSPDIFSEQRQNKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQAELDQLK 366
Cdd:pfam15800 238 STESFLPPSPPSAPISSP-ADPGQKPESPGSVLEQRQSKHKRFQNTLVILHKSGLLGITLKTKELIRQNQATQRELDRLK 316
                         330       340
                  ....*....|....*....|..
gi 1907086943 367 EQTQMFIEATKSRAPQAWAKLQ 388
Cdd:pfam15800 317 EQTQLFVEAIQSNAPQAWAKLQ 338
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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