NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907086830|ref|XP_036013202|]
View 

mis18-binding protein 1 isoform X1 [Mus musculus]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10073748)

SANT/Myb domain-containing protein binds DNA and may function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0006355|GO:0003700
PubMed:  8882580

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 143-186 2.36e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 41.41  E-value: 2.36e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907086830 143 EWSEQELQKLHCAFTslpKHKPGFWSDVAMAVGSRTADECQKKY 186
Cdd:cd00167     1 PWTEEEDELLLEAVK---KYGKNNWEKIAKELPGRTPKQCRERW 41
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 143-186 2.36e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 41.41  E-value: 2.36e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907086830 143 EWSEQELQKLHCAFTslpKHKPGFWSDVAMAVGSRTADECQKKY 186
Cdd:cd00167     1 PWTEEEDELLLEAVK---KYGKNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
142-186 4.93e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 40.28  E-value: 4.93e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1907086830  142 EEWSEQELQKLHCAFTslpKHKPGFWSDVAMAVGSRTADECQKKY 186
Cdd:smart00717   2 GEWTEEEDELLIELVK---KYGKNNWEKIAKELPGRTAEQCRERW 43
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 143-186 2.36e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 41.41  E-value: 2.36e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907086830 143 EWSEQELQKLHCAFTslpKHKPGFWSDVAMAVGSRTADECQKKY 186
Cdd:cd00167     1 PWTEEEDELLLEAVK---KYGKNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
142-186 4.93e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 40.28  E-value: 4.93e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1907086830  142 EEWSEQELQKLHCAFTslpKHKPGFWSDVAMAVGSRTADECQKKY 186
Cdd:smart00717   2 GEWTEEEDELLIELVK---KYGKNNWEKIAKELPGRTAEQCRERW 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH