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Conserved domains on  [gi|1907191014|ref|XP_036010176|]
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SURP and G-patch domain-containing protein 1 isoform X2 [Mus musculus]

Protein Classification

Surp and G-patch domain-containing protein( domain architecture ID 10485244)

protein containing domains Surp, kgd, and G-patch

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 55-106 2.26e-14

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


:

Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 67.16  E-value: 2.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907191014  55 NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEF 106
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 355-399 6.53e-14

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


:

Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 65.61  E-value: 6.53e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1907191014 355 ENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTiDGAGFGID 399
Cdd:pfam01585   2 SNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKK-DRRGLGAE 45
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 1-31 4.46e-07

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


:

Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 46.36  E-value: 4.46e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907191014   1 MEDYKDNPAFTFLHDKNSREFLYYRRKVAEI 31
Cdd:pfam01805  22 MEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
kgd super family cl39092
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 87-210 8.79e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


The actual alignment was detected with superfamily member PRK12270:

Pssm-ID: 476867 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 8.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014   87 FLYDPNSqgyryyrqkLDE-----FRKAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSI 161
Cdd:PRK12270    18 YLADPNS---------VDPswrefFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907191014  162 PGKPTATAAVKRKRKSRWGPEEDKVEL-------PPAELAqRDIDAS---PSPLSVQDL 210
Cdd:PRK12270    89 AAAAAAAPAAPPAAAAAAAPAAAAVEDevtplrgAAAAVA-KNMDASlevPTATSVRAV 146
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 55-106 2.26e-14

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 67.16  E-value: 2.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907191014  55 NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEF 106
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 355-399 6.53e-14

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 65.61  E-value: 6.53e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1907191014 355 ENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTiDGAGFGID 399
Cdd:pfam01585   2 SNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKK-DRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 352-398 1.77e-13

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 64.49  E-value: 1.77e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1907191014  352 LTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVnKGATTIDGAGFGI 398
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPI-SAEIKKDRKGLGA 46
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 54-108 8.72e-13

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 62.60  E-value: 8.72e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907191014   54 KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYdPNSQGYRYYRQKLDEFRK 108
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLK-PNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 1-31 4.46e-07

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 46.36  E-value: 4.46e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907191014   1 MEDYKDNPAFTFLHDKNSREFLYYRRKVAEI 31
Cdd:pfam01805  22 MEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 1-33 4.33e-05

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 41.03  E-value: 4.33e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1907191014    1 MEDYKDNPAFTFLHDKNSReFLYYRRKVAEIRK 33
Cdd:smart00648  23 MERERNNPQFDFLKPNDPY-HAYYRKKLAEYRQ 54
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 87-210 8.79e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 8.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014   87 FLYDPNSqgyryyrqkLDE-----FRKAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSI 161
Cdd:PRK12270    18 YLADPNS---------VDPswrefFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907191014  162 PGKPTATAAVKRKRKSRWGPEEDKVEL-------PPAELAqRDIDAS---PSPLSVQDL 210
Cdd:PRK12270    89 AAAAAAAPAAPPAAAAAAAPAAAAVEDevtplrgAAAAVA-KNMDASlevPTATSVRAV 146
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 55-106 2.26e-14

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 67.16  E-value: 2.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907191014  55 NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEF 106
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 355-399 6.53e-14

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 65.61  E-value: 6.53e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1907191014 355 ENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTiDGAGFGID 399
Cdd:pfam01585   2 SNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKK-DRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 352-398 1.77e-13

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 64.49  E-value: 1.77e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1907191014  352 LTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVnKGATTIDGAGFGI 398
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPI-SAEIKKDRKGLGA 46
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 54-108 8.72e-13

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 62.60  E-value: 8.72e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907191014   54 KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYdPNSQGYRYYRQKLDEFRK 108
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLK-PNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 1-31 4.46e-07

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 46.36  E-value: 4.46e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907191014   1 MEDYKDNPAFTFLHDKNSREFLYYRRKVAEI 31
Cdd:pfam01805  22 MEREERNPQFDFLFDPDDPLHAYYRWKLEEY 52
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 1-33 4.33e-05

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 41.03  E-value: 4.33e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1907191014    1 MEDYKDNPAFTFLHDKNSReFLYYRRKVAEIRK 33
Cdd:smart00648  23 MERERNNPQFDFLKPNDPY-HAYYRKKLAEYRQ 54
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 87-210 8.79e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 8.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014   87 FLYDPNSqgyryyrqkLDE-----FRKAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSI 161
Cdd:PRK12270    18 YLADPNS---------VDPswrefFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907191014  162 PGKPTATAAVKRKRKSRWGPEEDKVEL-------PPAELAqRDIDAS---PSPLSVQDL 210
Cdd:PRK12270    89 AAAAAAAPAAPPAAAAAAAPAAAAVEDevtplrgAAAAVA-KNMDASlevPTATSVRAV 146
G-patch_2 pfam12656
G-patch domain; Yeast Spp2, a G-patch protein and spliceosome component, interacts with the ...
 354-384 2.62e-04

G-patch domain; Yeast Spp2, a G-patch protein and spliceosome component, interacts with the ATP-dependent DExH-box splicing factor Prp2. As this interaction involves the G-patch sequence in Spp2 and is required for the recruitment of Prp2 to the spliceosome before the first catalytic step of splicing, it is proposed that Spp2 might be an accessory factor that confers spliceosome specificity on Prp2.


Pssm-ID: 432700 [Multi-domain]  Cd Length: 61  Bit Score: 38.80  E-value: 2.62e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907191014 354 VENIGYQMLMKMGWKEGEGLGTEGQGIKNPV 384
Cdd:pfam12656  14 VEEFGAAMLRGMGWKPGQGIGKNKKGDVKPK 44
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 97-191 2.64e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 42.54  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014  97 RYYRQKLDEFRKAKAGSTGSFP-APAPNPSLRRKSAPEALSGAVPPITACPtpvAPAPAVNPTPSIPGKPTATAAVKRKR 175
Cdd:PHA02682   60 RYYQSRLKANSACMQRPSGQSPlAPSPACAAPAPACPACAPAAPAPAVTCP---APAPACPPATAPTCPPPAVCPAPARP 136

                          90
                  ....*....|....*.
gi 1907191014 176 KSRWGPEEDKVelPPA 191
Cdd:PHA02682  137 APACPPSTRQC--PPA 150
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
107-204 5.76e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 5.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014 107 RKAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSIPGKPTATAAVKRKRKSRWGPEEDKV 186
Cdd:PRK12323  417 RAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

                          90       100
                  ....*....|....*....|....
gi 1907191014 187 ----ELPP--AELAQRDIDASPSP 204
Cdd:PRK12323  497 ppweELPPefASPAPAQPDAAPAG 520
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 109-204 7.33e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 7.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014 109 AKAGSTGSFPAPAPNPSLRRKSAPEAlsgAVPPITACPTPVAPAPAVNPTPSIPGKPTATAAVKRKRKSRWGPEEDKVEL 188
Cdd:PRK14951  378 KKTPARPEAAAPAAAPVAQAAAAPAP---AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

                          90
                  ....*....|....*.
gi 1907191014 189 PPAELAQRDIDASPSP 204
Cdd:PRK14951  455 AAPETVAIPVRVAPEP 470
PHA03247 PHA03247
large tegument protein UL36; Provisional
 118-204 1.75e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014  118 PAPAPNP---SLRRKSAPEALSGAVPPITACPTPVAPA--PAVNPTPSIPGKPTATAAVKRKR--KSRWGPEEDKVELPP 190
Cdd:PHA03247  2708 PEPAPHAlvsATPLPPGPAAARQASPALPAAPAPPAVPagPATPGGPARPARPPTTAGPPAPAppAAPAAGPPRRLTRPA 2787

                           90
                   ....*....|....
gi 1907191014  191 AELAQRDIDASPSP 204
Cdd:PHA03247  2788 VASLSESRESLPSP 2801
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 110-204 4.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 4.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014 110 KAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSIPGKPTATAAVKRKrksrwgPEEDKVELP 189
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP------AAAAPAAAP 438

                          90
                  ....*....|....*
gi 1907191014 190 PAELAQRDIDASPSP 204
Cdd:PRK14951  439 AAAPAAVALAPAPPA 453
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 108-204 4.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 4.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014 108 KAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTP-SIPGKPTATAAVKRKRKSrwgpEEDKV 186
Cdd:PRK14951  391 AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPaAVALAPAPPAQAAPETVA----IPVRV 466

                          90
                  ....*....|....*...
gi 1907191014 187 ELPPAELAQRDIDASPSP 204
Cdd:PRK14951  467 APEPAVASAAPAPAAAPA 484
PHA03247 PHA03247
large tegument protein UL36; Provisional
 113-204 4.33e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 4.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014  113 STGSFPAP-APNPSLRRKSAPEALS--GAVPPITACPTPVAPAPAVNPTPSIPGKP-TATAAVKRKRKSRWGPEEDKVEL 188
Cdd:PHA03247   369 SAGRHHPKrASLPTRKRRSARHAATpfARGPGGDDQTRPAAPVPASVPTPAPTPVPaSAPPPPATPLPSAEPGSDDGPAP 448

                           90
                   ....*....|....*.
gi 1907191014  189 PPAELAQRDIDASPSP 204
Cdd:PHA03247   449 PPERQPPAPATEPAPD 464
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 106-201 5.18e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 38.78  E-value: 5.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191014 106 FRKAKAGSTGSFPAPAPNPSLRRKSAPEALSgavPPITACPTPVAPAPAVNPTPSIP------------GKPTATAAVKR 173
Cdd:PHA03291  192 LSAPRLGPADVFVPATPRPTPRTTASPETTP---TPSTTTSPPSTTIPAPSTTIAAPqagttpeaegtpAPPTPGGGEAP 268

                          90       100
                  ....*....|....*....|....*...
gi 1907191014 174 KRKSRWGPEEDKVELPPAELAQRDIDAS 201
Cdd:PHA03291  269 PANATPAPEASRYELTVTQIIQIAIPAS 296
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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