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Conserved domains on  [gi|1907069863|ref|XP_036008392|]
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dnaJ homolog subfamily B member 2 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14294 super family cl36362
chaperone protein DnaJ; Provisional
 102-151 2.51e-05

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK14294:

Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 45.53  E-value: 2.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907069863 102 KREIYDRYGREGLTGAGSGPSRsetggagpGFTFTFRSPEEVFREFFGSG 151
Cdd:PRK14294   62 KRGIYDQYGHEGLSGTGFSGFS--------GFDDIFSSFGDIFEDFFGFG 103
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 291-310 2.93e-03

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


:

Pssm-ID: 197845  Cd Length: 20  Bit Score: 34.42  E-value: 2.93e-03
                           10        20
                   ....*....|....*....|
gi 1907069863  291 SEDEDLQLAMAYSLSEMEAA 310
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
 
Name Accession Description Interval E-value
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 102-151 2.51e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 45.53  E-value: 2.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907069863 102 KREIYDRYGREGLTGAGSGPSRsetggagpGFTFTFRSPEEVFREFFGSG 151
Cdd:PRK14294   62 KRGIYDQYGHEGLSGTGFSGFS--------GFDDIFSSFGDIFEDFFGFG 103
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 291-310 2.93e-03

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 34.42  E-value: 2.93e-03
                           10        20
                   ....*....|....*....|
gi 1907069863  291 SEDEDLQLAMAYSLSEMEAA 310
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
UIM pfam02809
Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the ...
 291-307 9.46e-03

Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the proteins containing this motif is a receptor for poly-ubiquitination chains for the proteasome. This motif has a pattern of conservation characteriztic of an alpha helix.


Pssm-ID: 460703  Cd Length: 17  Bit Score: 33.12  E-value: 9.46e-03
                          10
                  ....*....|....*..
gi 1907069863 291 SEDEDLQLAMAYSLSEM 307
Cdd:pfam02809   1 DEDEDLQRALALSLQEA 17
 
Name Accession Description Interval E-value
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 102-151 2.51e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 45.53  E-value: 2.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907069863 102 KREIYDRYGREGLTGAGSGPSRsetggagpGFTFTFRSPEEVFREFFGSG 151
Cdd:PRK14294   62 KRGIYDQYGHEGLSGTGFSGFS--------GFDDIFSSFGDIFEDFFGFG 103
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 291-310 2.93e-03

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 34.42  E-value: 2.93e-03
                           10        20
                   ....*....|....*....|
gi 1907069863  291 SEDEDLQLAMAYSLSEMEAA 310
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 102-167 5.93e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 38.20  E-value: 5.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907069863 102 KREIYDRYGREGLtgagsgpsrsETGGAGPGftftfrspeevfrefFGSGDPFSELFDDlgVFSEL 167
Cdd:PRK10767   62 KRAAYDQYGHAAF----------EQGGGGGG---------------FGGGGGFGDIFGD--IFGDI 100
UIM pfam02809
Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the ...
 291-307 9.46e-03

Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the proteins containing this motif is a receptor for poly-ubiquitination chains for the proteasome. This motif has a pattern of conservation characteriztic of an alpha helix.


Pssm-ID: 460703  Cd Length: 17  Bit Score: 33.12  E-value: 9.46e-03
                          10
                  ....*....|....*..
gi 1907069863 291 SEDEDLQLAMAYSLSEM 307
Cdd:pfam02809   1 DEDEDLQRALALSLQEA 17
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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