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Conserved domains on  [gi|2461755289|ref|XP_035128198|]
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centrosome-associated protein ALMS1 isoform X6 [Callithrix jacchus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ALMS_motif pfam15309
ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), ...
 3509-3641 2.28e-66

ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), KIAA1731 and C10orf90.


:

Pssm-ID: 464634  Cd Length: 131  Bit Score: 221.09  E-value: 2.28e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461755289 3509 FVRATLQESLQLHRPDFISRSGERIKRLKLIVQERKLQSMLQSERDALFNIDREQQSHQNCMRPLPkrVFLAAQKNKPIS 3588
Cdd:pfam15309    1 LVRLSLQEALEMHRPDFISRSRERLKRLELLVEERKLQEVLQRERERLFNKPIPRTNKRQQTVPLP--DNLFKPRRRAIS 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2461755289 3589 KKEMIQRSKRIYEQLPEVQKKREEEKRKSEYKSYRLRAQLYKKRVTNQLLGRK 3641
Cdd:pfam15309   79 KKEMIARSKRIYEQLPEVKKKKEEEKRKAEYKSNRLKAQLFKKKVTNRVLGRK 131
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 596-641 2.56e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 83.63  E-value: 2.56e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  596 QVLPDSHLPEEGLKVSAFPGPADQTTDTPAAPSTFYSQREKPGIFY 641
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 217-263 6.93e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 82.47  E-value: 6.93e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  217 RQTLTDGHLTDEALKVSAVSGPADQKTGTATVLSTPYSYREKPGIFY 263
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 878-924 1.66e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 81.32  E-value: 1.66e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  878 QQVLPHSHLPEETLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 924
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 925-971 4.82e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 80.16  E-value: 4.82e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  925 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 971
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 548-594 1.15e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.15e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  548 QQELPDSHPTEKALKVSTGPVPADQKTKIPAVRSNSYSQREKPSVLY 594
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 407-453 1.25e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.25e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  407 QQTLPNSHLTEEALKVSIVPGPDDQKTGLPSTPSSFYSQTQTPIIFS 453
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1254-1299 1.74e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.62  E-value: 1.74e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1254 QELPDSHLTEKALKVSNVPGSADEKTGVSTATSTSYSHREEPIISY 1299
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 972-1019 2.10e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.10e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  972 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPFYSQRRvKPSSFY 1019
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHRE-KPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1161-1207 2.18e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.18e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1161 EQTLSDSHLSEEALKVPPVPRPDAQKTGTPSVSSSLYSHREKPIVFY 1207
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 79-125 2.81e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 77.85  E-value: 2.81e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289   79 QKTLADTHLTEETLKVTAVPEPADQKTATPTVLSSSYSKKGKPSIFY 125
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 126-168 6.19e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.70  E-value: 6.19e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  126 QQGLPDSHLTEEVLKVSAAPGPADQTTGIPTVTST---YREKPGVF 168
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSsysHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 312-357 9.98e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 9.98e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  312 QVLADSHLPEEGLDISAVSGPADQKTGLPTVPSSAYSHREKFLISY 357
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 783-830 1.04e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 1.04e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  783 QQVLPDSHPAEEALKISVAPEPVEQITGTPTVTSPSYlQHREKPRIFY 830
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY-SHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 170-216 1.36e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 75.93  E-value: 1.36e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  170 QQELPESNLIEEPLKVSATPSPVEQKTGIPTVSSTSHSHEENPLLFY 216
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 831-877 3.06e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 74.77  E-value: 3.06e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  831 QPLLPSSPLTEEAKNISVVPGQADQKTEIPTLPSTFYSHTEKPGIFY 877
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 454-500 1.43e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.84  E-value: 1.43e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  454 QHTLPDILFPEEALKVSAVSVLAAQKTGTPTVSSNSPSHREKSSIFY 500
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 690-736 2.89e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.07  E-value: 2.89e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  690 QQALPGTYVPEEARNASAITGPGDQKTWIPRVLSTFYSQTEKPGIFY 736
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1114-1160 1.77e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 69.76  E-value: 1.77e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1114 QQALPDSPLNEEVVKVSATPGPGDQKTETPPVYSITYSHRGKPVIFY 1160
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1435-1482 4.71e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.61  E-value: 4.71e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289 1435 QYELPDSHLTEEALKVLPVSIPAEQKTEIPIGLSSSYshSHTEKLKIS 1482
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY--SHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 642-689 7.89e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.22  E-value: 7.89e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  642 QQTLPDSHLPKEALNILVAPRPADLKAGTPTPTSTYFSqHREKPSIFH 689
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYS-HREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 264-310 9.41e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 9.41e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  264 QPQLPESHQTEETLRDSATPGPADQNTEIPAVQSSSYSQRKKPSILY 310
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1208-1253 1.06e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 1.06e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1208 QQALRDSQLTKEALKVSAVPRPADQ-TGLSTITSSYYSHTEKPNISY 1253
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQkTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 501-547 1.64e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.07  E-value: 1.64e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  501 QQELPNSDLHRESLKMSTIPGLTDQKTGTPTVPSGFFSLGEKPSIFS 547
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1067-1113 3.48e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 66.30  E-value: 3.48e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1067 KQAFPDGPIPEEALKVSVVSGLIEQKTEIPTGPLASSALGEKPITFY 1113
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1345-1389 4.11e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.91  E-value: 4.11e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1345 QQELPD--LTEVTSKAVEVPGPADQKTEIQILSSSSYSNREKPSVFH 1389
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1020-1066 6.01e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.53  E-value: 6.01e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1020 QLPLLDSQIPEEALRVSSASGPADHTTGIPTITSPSYSFGEKPIVIH 1066
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1390-1434 5.16e-12

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 62.83  E-value: 5.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1390 QQELPD--VTEEALNVFVFPGQGDQKTDIPTVSSSYYSYGEKPSVSS 1434
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1300-1344 1.48e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 61.67  E-value: 1.48e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1300 QQELP--HFTEGALGILRVSEPADQKTGINTLSSNSYPQREQSVISY 1344
Cdd:pfam18727    1 QQELPdsHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 358-406 2.99e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.90  E-value: 2.99e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2461755289  358 QEALLDSHLPKEALKISAVSGLADEKTGASTVTSTYsmSSLAEKPGAFY 406
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSS--YSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1636-1681 3.37e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.52  E-value: 3.37e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1636 KDLPDRHLTEDALKISSALGQADQITRSQTVPSCTHAHGEKHKLIS 1681
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 737-782 7.08e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 59.75  E-value: 7.08e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  737 QKTLPGSHIPEETQKVSAVPGQADQTG-TPTPTSTSYSHTEKPGIFY 782
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTgIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1590-1635 1.17e-10

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 58.98  E-value: 1.17e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1590 QELPGRYVTEDVLKVSAIPRPAGQKTVLPTAPFSSLSHQEKPDIYH 1635
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat super family cl40041
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1542-1588 1.34e-09

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


The actual alignment was detected with superfamily member pfam18727:

Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 55.90  E-value: 1.34e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1542 QQQLPDKDQSKVSLKISAVPEPTDVNTGKPIPLSSSYFHREKSSIFS 1588
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
 
Name Accession Description Interval E-value
ALMS_motif pfam15309
ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), ...
 3509-3641 2.28e-66

ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), KIAA1731 and C10orf90.


Pssm-ID: 464634  Cd Length: 131  Bit Score: 221.09  E-value: 2.28e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461755289 3509 FVRATLQESLQLHRPDFISRSGERIKRLKLIVQERKLQSMLQSERDALFNIDREQQSHQNCMRPLPkrVFLAAQKNKPIS 3588
Cdd:pfam15309    1 LVRLSLQEALEMHRPDFISRSRERLKRLELLVEERKLQEVLQRERERLFNKPIPRTNKRQQTVPLP--DNLFKPRRRAIS 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2461755289 3589 KKEMIQRSKRIYEQLPEVQKKREEEKRKSEYKSYRLRAQLYKKRVTNQLLGRK 3641
Cdd:pfam15309   79 KKEMIARSKRIYEQLPEVKKKKEEEKRKAEYKSNRLKAQLFKKKVTNRVLGRK 131
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 596-641 2.56e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 83.63  E-value: 2.56e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  596 QVLPDSHLPEEGLKVSAFPGPADQTTDTPAAPSTFYSQREKPGIFY 641
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 217-263 6.93e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 82.47  E-value: 6.93e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  217 RQTLTDGHLTDEALKVSAVSGPADQKTGTATVLSTPYSYREKPGIFY 263
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 878-924 1.66e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 81.32  E-value: 1.66e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  878 QQVLPHSHLPEETLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 924
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 925-971 4.82e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 80.16  E-value: 4.82e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  925 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 971
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 548-594 1.15e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.15e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  548 QQELPDSHPTEKALKVSTGPVPADQKTKIPAVRSNSYSQREKPSVLY 594
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 407-453 1.25e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.25e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  407 QQTLPNSHLTEEALKVSIVPGPDDQKTGLPSTPSSFYSQTQTPIIFS 453
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1254-1299 1.74e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.62  E-value: 1.74e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1254 QELPDSHLTEKALKVSNVPGSADEKTGVSTATSTSYSHREEPIISY 1299
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 972-1019 2.10e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.10e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  972 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPFYSQRRvKPSSFY 1019
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHRE-KPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1161-1207 2.18e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.18e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1161 EQTLSDSHLSEEALKVPPVPRPDAQKTGTPSVSSSLYSHREKPIVFY 1207
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 79-125 2.81e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 77.85  E-value: 2.81e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289   79 QKTLADTHLTEETLKVTAVPEPADQKTATPTVLSSSYSKKGKPSIFY 125
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 126-168 6.19e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.70  E-value: 6.19e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  126 QQGLPDSHLTEEVLKVSAAPGPADQTTGIPTVTST---YREKPGVF 168
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSsysHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 312-357 9.98e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 9.98e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  312 QVLADSHLPEEGLDISAVSGPADQKTGLPTVPSSAYSHREKFLISY 357
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 783-830 1.04e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 1.04e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  783 QQVLPDSHPAEEALKISVAPEPVEQITGTPTVTSPSYlQHREKPRIFY 830
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY-SHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 170-216 1.36e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 75.93  E-value: 1.36e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  170 QQELPESNLIEEPLKVSATPSPVEQKTGIPTVSSTSHSHEENPLLFY 216
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 831-877 3.06e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 74.77  E-value: 3.06e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  831 QPLLPSSPLTEEAKNISVVPGQADQKTEIPTLPSTFYSHTEKPGIFY 877
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 454-500 1.43e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.84  E-value: 1.43e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  454 QHTLPDILFPEEALKVSAVSVLAAQKTGTPTVSSNSPSHREKSSIFY 500
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 690-736 2.89e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.07  E-value: 2.89e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  690 QQALPGTYVPEEARNASAITGPGDQKTWIPRVLSTFYSQTEKPGIFY 736
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1114-1160 1.77e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 69.76  E-value: 1.77e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1114 QQALPDSPLNEEVVKVSATPGPGDQKTETPPVYSITYSHRGKPVIFY 1160
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1435-1482 4.71e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.61  E-value: 4.71e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289 1435 QYELPDSHLTEEALKVLPVSIPAEQKTEIPIGLSSSYshSHTEKLKIS 1482
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY--SHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 642-689 7.89e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.22  E-value: 7.89e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  642 QQTLPDSHLPKEALNILVAPRPADLKAGTPTPTSTYFSqHREKPSIFH 689
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYS-HREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 264-310 9.41e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 9.41e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  264 QPQLPESHQTEETLRDSATPGPADQNTEIPAVQSSSYSQRKKPSILY 310
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1208-1253 1.06e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 1.06e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1208 QQALRDSQLTKEALKVSAVPRPADQ-TGLSTITSSYYSHTEKPNISY 1253
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQkTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 501-547 1.64e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.07  E-value: 1.64e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  501 QQELPNSDLHRESLKMSTIPGLTDQKTGTPTVPSGFFSLGEKPSIFS 547
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1067-1113 3.48e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 66.30  E-value: 3.48e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1067 KQAFPDGPIPEEALKVSVVSGLIEQKTEIPTGPLASSALGEKPITFY 1113
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1345-1389 4.11e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.91  E-value: 4.11e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1345 QQELPD--LTEVTSKAVEVPGPADQKTEIQILSSSSYSNREKPSVFH 1389
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1020-1066 6.01e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.53  E-value: 6.01e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1020 QLPLLDSQIPEEALRVSSASGPADHTTGIPTITSPSYSFGEKPIVIH 1066
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1390-1434 5.16e-12

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 62.83  E-value: 5.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1390 QQELPD--VTEEALNVFVFPGQGDQKTDIPTVSSSYYSYGEKPSVSS 1434
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1300-1344 1.48e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 61.67  E-value: 1.48e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1300 QQELP--HFTEGALGILRVSEPADQKTGINTLSSNSYPQREQSVISY 1344
Cdd:pfam18727    1 QQELPdsHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 358-406 2.99e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.90  E-value: 2.99e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2461755289  358 QEALLDSHLPKEALKISAVSGLADEKTGASTVTSTYsmSSLAEKPGAFY 406
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSS--YSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1636-1681 3.37e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.52  E-value: 3.37e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1636 KDLPDRHLTEDALKISSALGQADQITRSQTVPSCTHAHGEKHKLIS 1681
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 737-782 7.08e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 59.75  E-value: 7.08e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  737 QKTLPGSHIPEETQKVSAVPGQADQTG-TPTPTSTSYSHTEKPGIFY 782
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTgIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1590-1635 1.17e-10

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 58.98  E-value: 1.17e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1590 QELPGRYVTEDVLKVSAIPRPAGQKTVLPTAPFSSLSHQEKPDIYH 1635
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1542-1588 1.34e-09

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 55.90  E-value: 1.34e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1542 QQQLPDKDQSKVSLKISAVPEPTDVNTGKPIPLSSSYFHREKSSIFS 1588
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
 
Name Accession Description Interval E-value
ALMS_motif pfam15309
ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), ...
 3509-3641 2.28e-66

ALMS motif; This domain is found at the C-terminus of Alstrom syndrome protein 1 (ALMS1), KIAA1731 and C10orf90.


Pssm-ID: 464634  Cd Length: 131  Bit Score: 221.09  E-value: 2.28e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461755289 3509 FVRATLQESLQLHRPDFISRSGERIKRLKLIVQERKLQSMLQSERDALFNIDREQQSHQNCMRPLPkrVFLAAQKNKPIS 3588
Cdd:pfam15309    1 LVRLSLQEALEMHRPDFISRSRERLKRLELLVEERKLQEVLQRERERLFNKPIPRTNKRQQTVPLP--DNLFKPRRRAIS 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2461755289 3589 KKEMIQRSKRIYEQLPEVQKKREEEKRKSEYKSYRLRAQLYKKRVTNQLLGRK 3641
Cdd:pfam15309   79 KKEMIARSKRIYEQLPEVKKKKEEEKRKAEYKSNRLKAQLFKKKVTNRVLGRK 131
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 596-641 2.56e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 83.63  E-value: 2.56e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  596 QVLPDSHLPEEGLKVSAFPGPADQTTDTPAAPSTFYSQREKPGIFY 641
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 217-263 6.93e-19

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 82.47  E-value: 6.93e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  217 RQTLTDGHLTDEALKVSAVSGPADQKTGTATVLSTPYSYREKPGIFY 263
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 878-924 1.66e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 81.32  E-value: 1.66e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  878 QQVLPHSHLPEETLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 924
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 925-971 4.82e-18

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 80.16  E-value: 4.82e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  925 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPSNSFGEKPIVIY 971
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 548-594 1.15e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.15e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  548 QQELPDSHPTEKALKVSTGPVPADQKTKIPAVRSNSYSQREKPSVLY 594
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 407-453 1.25e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 79.01  E-value: 1.25e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  407 QQTLPNSHLTEEALKVSIVPGPDDQKTGLPSTPSSFYSQTQTPIIFS 453
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1254-1299 1.74e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.62  E-value: 1.74e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1254 QELPDSHLTEKALKVSNVPGSADEKTGVSTATSTSYSHREEPIISY 1299
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 972-1019 2.10e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.10e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  972 KQAFPDGHLPEESLKVSVAPGPVDQTTGTPTVTSPFYSQRRvKPSSFY 1019
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHRE-KPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1161-1207 2.18e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 78.24  E-value: 2.18e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1161 EQTLSDSHLSEEALKVPPVPRPDAQKTGTPSVSSSLYSHREKPIVFY 1207
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 79-125 2.81e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 77.85  E-value: 2.81e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289   79 QKTLADTHLTEETLKVTAVPEPADQKTATPTVLSSSYSKKGKPSIFY 125
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 126-168 6.19e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.70  E-value: 6.19e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  126 QQGLPDSHLTEEVLKVSAAPGPADQTTGIPTVTST---YREKPGVF 168
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSsysHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 312-357 9.98e-17

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 9.98e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289  312 QVLADSHLPEEGLDISAVSGPADQKTGLPTVPSSAYSHREKFLISY 357
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 783-830 1.04e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 76.31  E-value: 1.04e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  783 QQVLPDSHPAEEALKISVAPEPVEQITGTPTVTSPSYlQHREKPRIFY 830
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY-SHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 170-216 1.36e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 75.93  E-value: 1.36e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  170 QQELPESNLIEEPLKVSATPSPVEQKTGIPTVSSTSHSHEENPLLFY 216
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 831-877 3.06e-16

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 74.77  E-value: 3.06e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  831 QPLLPSSPLTEEAKNISVVPGQADQKTEIPTLPSTFYSHTEKPGIFY 877
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 454-500 1.43e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.84  E-value: 1.43e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  454 QHTLPDILFPEEALKVSAVSVLAAQKTGTPTVSSNSPSHREKSSIFY 500
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 690-736 2.89e-15

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 72.07  E-value: 2.89e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  690 QQALPGTYVPEEARNASAITGPGDQKTWIPRVLSTFYSQTEKPGIFY 736
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1114-1160 1.77e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 69.76  E-value: 1.77e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1114 QQALPDSPLNEEVVKVSATPGPGDQKTETPPVYSITYSHRGKPVIFY 1160
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1435-1482 4.71e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.61  E-value: 4.71e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289 1435 QYELPDSHLTEEALKVLPVSIPAEQKTEIPIGLSSSYshSHTEKLKIS 1482
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSY--SHREKPSIF 46
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 642-689 7.89e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 68.22  E-value: 7.89e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2461755289  642 QQTLPDSHLPKEALNILVAPRPADLKAGTPTPTSTYFSqHREKPSIFH 689
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYS-HREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 264-310 9.41e-14

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 9.41e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  264 QPQLPESHQTEETLRDSATPGPADQNTEIPAVQSSSYSQRKKPSILY 310
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1208-1253 1.06e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.84  E-value: 1.06e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1208 QQALRDSQLTKEALKVSAVPRPADQ-TGLSTITSSYYSHTEKPNISY 1253
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQkTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 501-547 1.64e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 67.07  E-value: 1.64e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  501 QQELPNSDLHRESLKMSTIPGLTDQKTGTPTVPSGFFSLGEKPSIFS 547
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1067-1113 3.48e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 66.30  E-value: 3.48e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1067 KQAFPDGPIPEEALKVSVVSGLIEQKTEIPTGPLASSALGEKPITFY 1113
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1345-1389 4.11e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.91  E-value: 4.11e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1345 QQELPD--LTEVTSKAVEVPGPADQKTEIQILSSSSYSNREKPSVFH 1389
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1020-1066 6.01e-13

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 65.53  E-value: 6.01e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1020 QLPLLDSQIPEEALRVSSASGPADHTTGIPTITSPSYSFGEKPIVIH 1066
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1390-1434 5.16e-12

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 62.83  E-value: 5.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1390 QQELPD--VTEEALNVFVFPGQGDQKTDIPTVSSSYYSYGEKPSVSS 1434
Cdd:pfam18727    1 QQELPDshLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1300-1344 1.48e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 61.67  E-value: 1.48e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1300 QQELP--HFTEGALGILRVSEPADQKTGINTLSSNSYPQREQSVISY 1344
Cdd:pfam18727    1 QQELPdsHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 358-406 2.99e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.90  E-value: 2.99e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2461755289  358 QEALLDSHLPKEALKISAVSGLADEKTGASTVTSTYsmSSLAEKPGAFY 406
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSS--YSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1636-1681 3.37e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 60.52  E-value: 3.37e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1636 KDLPDRHLTEDALKISSALGQADQITRSQTVPSCTHAHGEKHKLIS 1681
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 737-782 7.08e-11

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 59.75  E-value: 7.08e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289  737 QKTLPGSHIPEETQKVSAVPGQADQTG-TPTPTSTSYSHTEKPGIFY 782
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTgIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1590-1635 1.17e-10

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 58.98  E-value: 1.17e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2461755289 1590 QELPGRYVTEDVLKVSAIPRPAGQKTVLPTAPFSSLSHQEKPDIYH 1635
Cdd:pfam18727    2 QELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
ALMS_repeat pfam18727
Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It ...
 1542-1588 1.34e-09

Alstrom syndrome repeat; This entry contains a single repeat unit of approximately 47 AA. It is found in Alstrom syndrome protein 1 (ALMS1) and homologs.


Pssm-ID: 376150 [Multi-domain]  Cd Length: 47  Bit Score: 55.90  E-value: 1.34e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2461755289 1542 QQQLPDKDQSKVSLKISAVPEPTDVNTGKPIPLSSSYFHREKSSIFS 1588
Cdd:pfam18727    1 QQELPDSHLTEEALKVSAVPGPADQKTGIPTVTSSSYSHREKPSIFY 47
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 5-204 6.51e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 6.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461755289    5 SPDTVSKTPKH----LAGDTSKGSIAKVTQSTLKPDITTTPVDSDIGSHlSLSLEDLSQLAVSSPLETTS----GQHTdt 76
Cdd:pfam05109  559 TPAVTTPTPNAtiptLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNH-TLGGTSSTPVVTSPPKNATSavttGQHN-- 635

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461755289   77 LNQKTLADTHLTEETLKVTAVPEPADQKTATPTVLSSSYSKKGKPsifYQQGLPDSHLTEEVLKVSAAPGPADQTTGIPT 156
Cdd:pfam05109  636 ITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGEN---ITQVTPASTSTHHVSTSSPAPRPGTTSQASGP 712

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2461755289  157 VTSTYREKPGvfdqqelpESNLIE-EPLKVSATP-SPVEQKTGIPTVSST 204
Cdd:pfam05109  713 GNSSTSTKPG--------EVNVTKgTPPKNATSPqAPSGQKTAVPTVTST 754
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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