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Conserved domains on  [gi|1370512392|ref|XP_024302930|]
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mitochondrial peptide methionine sulfoxide reductase isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MsrA super family cl42275
Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, ...
62-110 6.54e-28

Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG0225:

Pssm-ID: 439995  Cd Length: 177  Bit Score: 100.55  E-value: 6.54e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370512392  62 PEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:COG0225     1 PAGTETATFAGGCFWCVEAVFEQLPGVISVVSGYAGGHTPNPTYEEVCS 49
 
Name Accession Description Interval E-value
MsrA COG0225
Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, ...
62-110 6.54e-28

Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439995  Cd Length: 177  Bit Score: 100.55  E-value: 6.54e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370512392  62 PEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:COG0225     1 PAGTETATFAGGCFWCVEAVFEQLPGVISVVSGYAGGHTPNPTYEEVCS 49
PMSR pfam01625
Peptide methionine sulfoxide reductase; This enzyme repairs damaged proteins. Methionine ...
68-110 9.20e-24

Peptide methionine sulfoxide reductase; This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.


Pssm-ID: 460270  Cd Length: 153  Bit Score: 89.37  E-value: 9.20e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1370512392  68 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:pfam01625   2 ATFAGGCFWGVEALFERLPGVISTEVGYAGGHTENPTYEEVCS 44
msrA TIGR00401
methionine-S-sulfoxide reductase; This model describes peptide methionine sulfoxide reductase ...
66-110 8.95e-23

methionine-S-sulfoxide reductase; This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens. [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 129496  Cd Length: 149  Bit Score: 86.73  E-value: 8.95e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1370512392  66 QMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:TIGR00401   1 EIATFAGGCFWGTEKYFRLIPGVVSTAVGYTNGYTPNPTYEEVCS 45
PRK05550 PRK05550
bifunctional methionine sulfoxide reductase B/A protein; Provisional
63-111 1.43e-17

bifunctional methionine sulfoxide reductase B/A protein; Provisional


Pssm-ID: 235499 [Multi-domain]  Cd Length: 283  Bit Score: 75.70  E-value: 1.43e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370512392  63 EGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSD 111
Cdd:PRK05550  125 YDTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSG 173
 
Name Accession Description Interval E-value
MsrA COG0225
Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, ...
62-110 6.54e-28

Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439995  Cd Length: 177  Bit Score: 100.55  E-value: 6.54e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370512392  62 PEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:COG0225     1 PAGTETATFAGGCFWCVEAVFEQLPGVISVVSGYAGGHTPNPTYEEVCS 49
PMSR pfam01625
Peptide methionine sulfoxide reductase; This enzyme repairs damaged proteins. Methionine ...
68-110 9.20e-24

Peptide methionine sulfoxide reductase; This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.


Pssm-ID: 460270  Cd Length: 153  Bit Score: 89.37  E-value: 9.20e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1370512392  68 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:pfam01625   2 ATFAGGCFWGVEALFERLPGVISTEVGYAGGHTENPTYEEVCS 44
msrA TIGR00401
methionine-S-sulfoxide reductase; This model describes peptide methionine sulfoxide reductase ...
66-110 8.95e-23

methionine-S-sulfoxide reductase; This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens. [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 129496  Cd Length: 149  Bit Score: 86.73  E-value: 8.95e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1370512392  66 QMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
Cdd:TIGR00401   1 EIATFAGGCFWGTEKYFRLIPGVVSTAVGYTNGYTPNPTYEEVCS 45
PRK05550 PRK05550
bifunctional methionine sulfoxide reductase B/A protein; Provisional
63-111 1.43e-17

bifunctional methionine sulfoxide reductase B/A protein; Provisional


Pssm-ID: 235499 [Multi-domain]  Cd Length: 283  Bit Score: 75.70  E-value: 1.43e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1370512392  63 EGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSD 111
Cdd:PRK05550  125 YDTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSG 173
PRK14018 PRK14018
bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide ...
73-109 4.28e-06

bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB;


Pssm-ID: 184456 [Multi-domain]  Cd Length: 521  Bit Score: 44.10  E-value: 4.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1370512392  73 GCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVC 109
Cdd:PRK14018  206 GCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVY 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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