|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-1001 |
1.48e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.28 E-value: 1.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 162 SQDLDDHQHELSALQ-NAHQQKLteisRRHREELSDYEERIEELENLLQQGGSGVTVTDhSKVYEMQNTIQILQMEKVES 240
Cdd:TIGR02168 219 KAELRELELALLVLRlEELREEL----EELQEELKEAEEELEELTAELQELEEKLEELR-LEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 241 TKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHsssv 320
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE---- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 321 aevlrLQQALTDAENEIMRLRSlnqDISLAEDNQKLqmcvqtLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdld 400
Cdd:TIGR02168 370 -----LESRLEELEEQLETLRS---KVAQLELQIAS------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 401 lfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSvIKKLKEELAGEKQRth 480
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG-- 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 481 qleddkmniIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVE--------DLVDQLSKSEKNNFDIQKENHELREHIRqn 552
Cdd:TIGR02168 508 ---------VKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqAVVVENLNAAKKAIAFLKQNELGRVTFL-- 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 553 eeELSTVR------SELTQSQTQGSSRNVKDDLLKERET---QVQNLKQNLSEVEQLNEHLEQV-----AFDLRTENEEL 618
Cdd:TIGR02168 577 --PLDSIKgteiqgNDREILKNIEGFLGVAKDLVKFDPKlrkALSYLLGGVLVVDDLDNALELAkklrpGYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 619 LEA----YEEVRNQleESVAGNKQISLE----KTAMLEWEKAPLETELCRAEKRV------LEEERKYEQTVQELSSACS 684
Cdd:TIGR02168 655 VRPggviTGGSAKT--NSSILERRREIEeleeKIEELEEKIAELEKALAELRKELeeleeeLEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 685 PDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKEL 764
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 765 DkcaQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEpRTLDSTTELESELSQLHRIKGHLEEE 844
Cdd:TIGR02168 813 T---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 845 IKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMsishtrlflekDEEIKNLQKTIEQIKAQLHEERQDSqtens 924
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQL-----------ELRLEGLEVRIDNLQERLSEEYSLT----- 952
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 925 diFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL----EIKLLNEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLE 1000
Cdd:TIGR02168 953 --LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLaaieEYEELKERYDFLTAQKEDLTE-AKETLEEAIEEIDRE 1029
|
.
gi 755542115 1001 I 1001
Cdd:TIGR02168 1030 A 1030
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-984 |
1.30e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 1.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 242 KQIEDLENKIKEIHKRLSSAEHDQEVWKKEQE-RLEVEKREMTEQCERLK-----LELSEAQQSALRQSDAAVEEETilp 315
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEalerqKEAIERQLASLEEELEKLTEEI--- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 316 hSSSVAEVLRLQQALTDAENEIMRLRSlNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTA 395
Cdd:TIGR02169 261 -SELEKRLEEIEQLLEELNKKIKDLGE-EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 396 TrdlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGE 475
Cdd:TIGR02169 339 E---ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 476 KQRTHQLEDDKMniikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEE 555
Cdd:TIGR02169 416 QRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 556 LSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTEN---EELLEAYEEVRNQLEES 632
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNvvvEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 633 VAGNKQISLEKTAMLEWEKAPLETELCRAEK-RVLEEERKYEQTV----QELSSACSPDTSALQLEQERLIQLNQE---- 703
Cdd:TIGR02169 572 AGRATFLPLNKMRDERRDLSILSEDGVIGFAvDLVEFDPKYEPAFkyvfGDTLVVEDIEAARRLMGKYRMVTLEGElfek 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 704 -------------KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQT 770
Cdd:TIGR02169 652 sgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 771 LRKN----ETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSrvvpapeprtldsttELESELSQLHRIKGHleEEIK 846
Cdd:TIGR02169 732 EEKLkerlEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH---------------KLEEALNDLEARLSH--SRIP 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 847 HHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMsishtrlflekDEEIKNLQKTIEQIKAQLHEERQdsQTENSDI 926
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-----------EKEIQELQEQRIDLKEQIKSIEK--EIENLNG 861
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 927 FQETKVQSLSiEHGSEKHDLSKaETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSK 984
Cdd:TIGR02169 862 KKEELEEELE-ELEAALRDLES-RLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
107-843 |
3.75e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 3.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 107 SQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSsdqtEICKLQNIIKELKQNRSQdLDDHQHELSALQNAHQQKLTEI 186
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEI----EELQKELYALAN----EISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLDEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 187 srrhREELSDYEERIEELENLLQQggsgvtvtDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQE 266
Cdd:TIGR02168 336 ----AEELAELEEKLEELKEELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 267 VWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEE----------TILPHSSSVAEVLRLQQALTDAENE 336
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleelqeelerLEEALEELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 337 IMRLRS-LNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELqISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEA- 414
Cdd:TIGR02168 484 LAQLQArLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAi 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 415 ---KEQELNQ-------SIHENEILMAELEELDKQNQEATKHVILIK--DQLSKQQS----------EGDSVIKKLKEEL 472
Cdd:TIGR02168 563 aflKQNELGRvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdPKLRKALSyllggvlvvdDLDNALELAKKLR 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 473 AGEKQRThqLEDDKMNIIKELTVQKEKLTHS----EQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREH 548
Cdd:TIGR02168 643 PGYRIVT--LDGDLVRPGGVITGGSAKTNSSilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 549 IRQNEEELSTVRSELTQsqtqgssrnvkddLLKERETQVQNLKQNLSEVEQLNEHLEQVAfDLRTENEELLEAYEEVRNQ 628
Cdd:TIGR02168 721 LEELSRQISALRKDLAR-------------LEAEVEQLEERIAQLSKELTELEAEIEELE-ERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 629 LEESVAGNKQislektamlewEKAPLETELCRAEKRVLEEERKYEQTVQELSSaCSPDTSALQLEQERLIQLNQEKDFEI 708
Cdd:TIGR02168 787 LEAQIEQLKE-----------ELKALREALDELRAELTLLNEEAANLRERLES-LERRIAATERRLEDLEEQIEELSEDI 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 709 AELKKSIEQMDTDHKrtketlssslEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSL 788
Cdd:TIGR02168 855 ESLAAEIEELEELIE----------ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 789 GSMKEE----NNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEE 843
Cdd:TIGR02168 925 AQLELRleglEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
397-1004 |
4.35e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 4.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 397 RDLDLFSQVHDLKHnLEAKEQELNQSIHENEilmAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEK 476
Cdd:COG1196 223 KELEAELLLLKLRE-LEAELEELEAELEELE---AELEELEAELAELEAELEELRLELEELELE----LEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 477 QRTHQLEddkmniiKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 556
Cdd:COG1196 295 AELARLE-------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 557 STVRSELTQSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGN 636
Cdd:COG1196 368 LEAEAELAEAEEE----------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 637 KQISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSAcspDTSALQLEQERLIQLNQEKDFEIAELKKSIE 716
Cdd:COG1196 438 EEEEEALEEAAEEEAE-LEEEEEALLELLAELLEEAALLEAALAEL---LEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 717 QMDTDHKRTKETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQT-----------IEEKD 785
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALA--AALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkiraraALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 786 RSLGSMKEENNHLQEELERLREQQSR-----VVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKL 860
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVlgdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 861 QLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHG 940
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 941 SEKHDLSKAETERLVKGIKERELEIKLL--------------NEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEIQAL 1004
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEE-ARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
149-718 |
9.98e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 9.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 149 KLQNIIKELKQN-RSQDLDDHQHELSALQNAHQQKLTEIsRRHREELSDYEERIEELENLLQQGGSGVTvtdhskvyEMQ 227
Cdd:COG1196 217 ELKEELKELEAElLLLKLRELEAELEELEAELEELEAEL-EELEAELAELEAELEELRLELEELELELE--------EAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 228 NTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAA 307
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 308 VEEETILphSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKlqmcvQTLEKEKSLLSQEKEELQISLSKLSSE 387
Cdd:COG1196 368 LEAEAEL--AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-----ERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 388 YEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQ---------NQEATKHVILIKDQLSKQQ 458
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARllllleaeaDYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 459 SEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKL-----THSEQALSDLQLTKQKLEDKVEDLVDQLSKSEK 533
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAieylkAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 534 NNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRnvkddLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRT 613
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV-----TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 614 ENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLE 693
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570 580
....*....|....*....|....*
gi 755542115 694 QERLIQLNQEKDfEIAELKKSIEQM 718
Cdd:COG1196 756 LPEPPDLEELER-ELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-809 |
1.17e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 250 KIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQ--SALRQSDAAVEEETILPHSSSVAEVLRLQ 327
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELelEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 328 QALTDAENEIMRLRSLNQDISLAEDNQklqmcvQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHD 407
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEEL------EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 408 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEAtkhviliKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 487
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 488 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREH--------IRQNEEELSTV 559
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 560 RSELTQSQTQGSSRNVKDDLLKERETQVQNLK--------QNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEE 631
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 632 SVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAEL 711
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 712 KKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSM 791
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
570 580
....*....|....*....|....*
gi 755542115 792 -------KEENNHLQEELERLREQQ 809
Cdd:COG1196 780 gpvnllaIEEYEELEERYDFLSEQR 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
750-1685 |
1.54e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 750 IVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapeprTLDSTTELES 829
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL-------LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 830 ELSQLHRIKGHLEEEIKHHQKMIEdqnqsklqllqslqEQKKELDEFKYQHEQMSishtRLFLEKDEEIKNLQKTIEQIK 909
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQ--------------ELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 910 AQLheERQDSQTENSDifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGK 989
Cdd:TIGR02168 302 QQK--QILRERLANLE--RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 990 LTQIIQQKDLEIQALHARissASYSQDVVYLQQQLHAYAMEREKVMVILNEktRENSQLKTEYHKVIDIISAKEAALIKL 1069
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQI---ASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1070 QDENKKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQ 1149
Cdd:TIGR02168 453 QEELERLEEALEEL-----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1150 QVKKMEEWKQQVMTTVQ-NMQH---ESAQLQEELHQLQAQVS--------VDSDNNSKLQVDYTGLIQSYEQNETKLKNF 1217
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGgRLQAvvvENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1218 GQELAQVQHSIGqlcntkdLLLGKLDI---------MSPQLSSGSSLTSQAAEPLRAS-----QSSEPHESSQLLQQEVD 1283
Cdd:TIGR02168 608 VKFDPKLRKALS-------YLLGGVLVvddldnaleLAKKLRPGYRIVTLDGDLVRPGgvitgGSAKTNSSILERRREIE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1284 DLRKSLQEKDATIRTLQEnnhrlsdsvaasseverkeheqadsEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENL 1363
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEK-------------------------ALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1364 ANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQEtnmkfsmmlrekefechsmrekalaf 1443
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------------------------- 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1444 eqllkekeqgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLE 1523
Cdd:TIGR02168 790 -------------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1524 SEDSHTREALAAEDREAKLrkkvsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYA 1603
Cdd:TIGR02168 857 LAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1604 LSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEAN----AALDSASRLTEQLDLKEEQ 1679
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQ 1008
|
....*.
gi 755542115 1680 IEELKK 1685
Cdd:TIGR02168 1009 KEDLTE 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1051 |
1.74e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 273 ERLEVEKREMTEQCERLKLELSEAQQSAlrqsdAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQdiSLAED 352
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREELEELQEELKEAEEELE--ELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 353 NQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyeviKSTATRDLDLFSQ-VHDLKHNLEAKEQELNQSIHENEILMA 431
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE----ISRLEQQKQILRErLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 432 ELEELDKQNQEATKHVILIKDQLSK---QQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALS 508
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 509 DLQ-----LTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKER 583
Cdd:TIGR02168 418 RLQqeieeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 584 ETQVQNLKQNLSEV----EQLNEHLEQVAFDLRTENE----------ELLEAYE-EVRNQLEESVAGNKQISLEKTAMLE 648
Cdd:TIGR02168 498 QENLEGFSEGVKALlknqSGLSGILGVLSELISVDEGyeaaieaalgGRLQAVVvENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 649 -------------WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSaLQLEQERLIQLNQE-----KDFEIAE 710
Cdd:TIGR02168 578 ldsikgteiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRPGyrivtLDGDLVR 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 711 LKKSIeqmdtdHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGS 790
Cdd:TIGR02168 657 PGGVI------TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 791 MKEENNHLQEELERLREQQSrvvpapepRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQK 870
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIA--------QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 871 KELDEFKYQHEQMSIShtrlFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIfqetKVQSLSIEHGSEKHDLSKAE 950
Cdd:TIGR02168 803 EALDELRAELTLLNEE----AANLRERLESLERRIAATERRLEDLEEQIEELSEDI----ESLAAEIEELEELIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 951 TERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEIQALHARISSAsySQDVVYLQQQLHA-YAM 1029
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELES-KRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEeYSL 951
|
810 820
....*....|....*....|..
gi 755542115 1030 EREKVMVILNEKTRENSQLKTE 1051
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-717 |
5.14e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 5.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 3 QNERLKKLYTDLEEKhEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPAASASSS 82
Cdd:TIGR02168 307 LRERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 83 fsygvshrvsafheddmdfGDVISSQQEINRLSNEVSRLESELghwrhiaqtkvqgaQSSDQTEICKLQNIIKELKQNRS 162
Cdd:TIGR02168 386 -------------------SKVAQLELQIASLNNEIERLEARL--------------ERLEDRRERLQQEIEELLKKLEE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 163 QDLDDHQHELSALqNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGvtVTDHSKVYEMQNTIQILQMEKVESTK 242
Cdd:TIGR02168 433 AELKELQAELEEL-EEELEELQEELERLEEALEELREELEEAEQALDAAERE--LAQLQARLDSLERLQENLEGFSEGVK 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 243 QIEDLENKIKEIHKRLSSAEHDQEVWKKEQErlevekremTEQCERLKLELSEAQQSALRQSDAAVEEE----TILPHSS 318
Cdd:TIGR02168 510 ALLKNQSGLSGILGVLSELISVDEGYEAAIE---------AALGGRLQAVVVENLNAAKKAIAFLKQNElgrvTFLPLDS 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 319 SVAEVLRLQQALTdAENEIMRLRSLNQDISLAEDNQKL-------QMCVQTLEKEKSLLSQEKEELQI-SLS--KLSSEY 388
Cdd:TIGR02168 581 IKGTEIQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKAlsyllggVLVVDDLDNALELAKKLRPGYRIvTLDgdLVRPGG 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 389 EVIKSTATRDLDLFSQVHDLKhNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKL 468
Cdd:TIGR02168 660 VITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 469 KEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREH 548
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 549 IRQNEEELStvrseltqsqtqgSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQ 628
Cdd:TIGR02168 819 AANLRERLE-------------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 629 LEESVAGNKQISLEKTAMLEWEKA--PLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDF 706
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965
|
730
....*....|.
gi 755542115 707 EIAELKKSIEQ 717
Cdd:TIGR02168 966 DEEEARRRLKR 976
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
149-812 |
7.68e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 7.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 149 KLQNIIKEL------KQNRSQDLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEErieelenllqqgGSGVTVTDHSK 222
Cdd:pfam15921 146 QLQNTVHELeaakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEI----RSILVDFEE------------ASGKKIYEHDS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 223 VyemqNTIQILQMEKVEStKQIEDLENKIKEIHKRLSSAEHDQEVWKKE-QERLEVEKREMTEQCERLKLE-------LS 294
Cdd:pfam15921 210 M----STMHFRSLGSAIS-KILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLISEheveitgLT 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 295 EAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQaLTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEK 374
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ-LSDLESTVSQLRS-----ELREAKRMYEDKIEELEKQLVLANSEL 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 375 EELQISLSKLSSEyevikstaTRDLDlfSQVHDLKHNLEAKEQELNQSIHENEILMAE-----------LEELDKQNQEA 443
Cdd:pfam15921 359 TEARTERDQFSQE--------SGNLD--DQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitidhlRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 444 TKHVILIKDQLSKQQSEGD---SVIKKLKEELAGEKQRTHQLEDDK---MNIIKELTVQKEKLTHSEQALSDLQLTKQKL 517
Cdd:pfam15921 429 QRLEALLKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 518 EDKVEDLVDQLSKSeKNNFDIQKENhelREHIRQNEEELSTVRSELTQSQTQGSSrnvKDDLLKERETQVQNLKQNLSE- 596
Cdd:pfam15921 509 ERAIEATNAEITKL-RSRVDLKLQE---LQHLKNEGDHLRNVQTECEALKLQMAE---KDKVIEILRQQIENMTQLVGQh 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 597 ------VEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwekapLETELCRAEKRVLEEER 670
Cdd:pfam15921 582 grtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN-----AGSERLRAVKDIKQERD 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 671 KYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSS-------SLEEQKQLTQLI 743
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsdghAMKVAMGMQKQI 736
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 744 NEKEICIVKLKEKSSELQKELDKCAqtlRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRV 812
Cdd:pfam15921 737 TAKRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
579-1248 |
1.19e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.07 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 579 LLKERETQVQNLKQNLSEVEQLNE----HLEQVAFDLRTENEELL--------------EAYEEVRNQLEESVAGNKQIS 640
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQmerdamadirrresQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 641 LEKTAMLEWEKAPLET--ELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQER-----LIQLNQEKDFEIAELKK 713
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQlrKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaISKILRELDTEISYLKG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 714 SI----EQMDTDHKRTKETLSSSLEE-QKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-KNETLRQTIEEKDRS 787
Cdd:pfam15921 239 RIfpveDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiIQEQARNQNSMYMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 788 LGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTEL---ESELSQLHRIKGHLEEEIkhhQKMIEDQNQSKLQLLQ 864
Cdd:pfam15921 319 LSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELteaRTERDQFSQESGNLDDQL---QKLLADLHKREKELSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 865 SLQEQKKELDefKYQHEQMSISHTRLFL-EKDEEIKNLQKTIEQIKA--QLHEERQDSQTENSDIFQEtKVQSLSIEHGS 941
Cdd:pfam15921 396 EKEQNKRLWD--RDTGNSITIDHLRRELdDRNMEVQRLEALLKAMKSecQGQMERQMAAIQGKNESLE-KVSSLTAQLES 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 942 EKHDLSKAETERLVKGIKERELEiKLLNEKNTSLTKQiDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQ 1021
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESSE-RTVSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1022 QQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIK--------------LQDENKKMSTRFESSGQDM 1087
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrlelqefkiLKDKKDAKIRELEARVSDL 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1088 FKETIQNLS------RIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVN-SNQFEELLQERDKLKQQVKKMEEWKQQ 1160
Cdd:pfam15921 631 ELEKVKLVNagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1161 VMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTgLIQSYEQNETKLKNF-GQELAQVQHSIGQLCNTKDLLL 1239
Cdd:pfam15921 711 TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ-FLEEAMTNANKEKHFlKEEKNKLSQELSTVATEKNKMA 789
|
....*....
gi 755542115 1240 GKLDIMSPQ 1248
Cdd:pfam15921 790 GELEVLRSQ 798
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
231-812 |
1.84e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.24 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 231 QILQMEKVEST-----KQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKlelseaqqsALRQSD 305
Cdd:PRK03918 153 QILGLDDYENAyknlgEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP---------ELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 306 AAVEEetilphsssvaEVLRLQQALTDAENEIMRLRSLNQDI-SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQiSLSKL 384
Cdd:PRK03918 224 EKLEK-----------EVKELEELKEEIEELEKELESLEGSKrKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 385 SSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSegdsv 464
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE----- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 465 IKKLKEELAGEKQRTHQLEDDKmnIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHE 544
Cdd:PRK03918 367 AKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 545 LREHIRQN-----EEELSTVRSELTQSQTQGS---SRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFdlrtenE 616
Cdd:PRK03918 445 LTEEHRKElleeyTAELKRIEKELKEIEEKERklrKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL------E 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 617 ELLEAYEEVRNQLEESVAGNKQIS-----LEKTAMLEWEKAPLETELCRAEKRVLEEERKY-----------EQTVQELS 680
Cdd:PRK03918 519 ELEKKAEEYEKLKEKLIKLKGEIKslkkeLEKLEELKKKLAELEKKLDELEEELAELLKELeelgfesveelEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 681 SACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTDHKRTKEtLSSSLEEqkqLTQLINEKEicIVKLKEKSSEL 760
Cdd:PRK03918 599 PFYNEYLELKDAEKELEREEKELKKLE-EELDKAFEELAETEKRLEE-LRKELEE---LEKKYSEEE--YEELREEYLEL 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 755542115 761 QKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRV 812
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
237-807 |
2.11e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 2.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 237 KVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSAlrqsdaaveEETILPH 316
Cdd:TIGR04523 70 INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQK---------KENKKNI 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 317 SSSVAEVLRLQQALTDAENEIMRLRslNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTAT 396
Cdd:TIGR04523 141 DKFLTEIKKKEKELEKLNNKYNDLK--KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 397 RDLDLFSQVHDLKHNLEAKEQELNQsiheneiLMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEK 476
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINE-------KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 477 QRTHQLEDDK----MNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQN 552
Cdd:TIGR04523 292 QLKSEISDLNnqkeQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 553 EEELSTVRSEltqsqtqgssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEES 632
Cdd:TIGR04523 369 QNEIEKLKKE----------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 633 vagNKQISlektaMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSacspdtsaLQLEQERLIQLNQEKDFEIAELK 712
Cdd:TIGR04523 439 ---NSEIK-----DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK--------IKQNLEQKQKELKSKEKELKKLN 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 713 KSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKcaqtlrknETLRQTIEEKDRSLGSMK 792
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--------ENLEKEIDEKNKEIEELK 574
|
570
....*....|....*
gi 755542115 793 EENNHLQEELERLRE 807
Cdd:TIGR04523 575 QTQKSLKKKQEEKQE 589
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
176-989 |
6.01e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 6.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 176 QNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEdlENKIKEIH 255
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE--EARKAEDA 1223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 256 KRLSSAEHDQEVWKKEQERLEVEKREMTEqcERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAEn 335
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNE--EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE- 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 336 eimrLRSLNQDISLAEDNQKlqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAK 415
Cdd:PTZ00121 1301 ----KKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 416 EQELNQSIHENEILMAEL---EELDKQNQEATKHVILIKDQlSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKE 492
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 493 LTVQKEKLTH----SEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKEnhelREHIRQNEEELSTVRSELTQSQT 568
Cdd:PTZ00121 1452 KAEEAKKAEEakkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK----AAEAKKKADEAKKAEEAKKADEA 1527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 569 QGSSRNVKDDLLKERETQVQnlKQNLSEVEQLNEHLEQVAFDLRTENEEllEAYEEVRNQLEESVAGNKQISLEKTAMLE 648
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKKAEEAKKAEE--DKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 649 WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQmdtDHKRTKET 728
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEA 1680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 729 LSSSLEEQKQLTQLINEKEicivkLKEKSSELQKeldKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQ 808
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAE-----EAKKAEELKK---KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 809 QSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHT 888
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 889 RLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHdlskaETERLVKGIKERELEIKLL 968
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEAD-----EIEKIDKDDIEREIPNNNM 1907
|
810 820
....*....|....*....|.
gi 755542115 969 NEKNTSLTKqiDQLSKDEVGK 989
Cdd:PTZ00121 1908 AGKNNDIID--DKLDKDEYIK 1926
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-912 |
1.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 361 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILM----AELEEL 436
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRreleERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 437 DKQNQEATKHVILIKDQLSKQQSEGDS---VIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLT 513
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEaeeELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 514 KQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQN 593
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 594 LSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNqleesVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYE 673
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 674 QTVQELSSAcspdTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHkrtkETLSSSLEEQKQLTQLINEKEICIVKL 753
Cdd:COG1196 557 EVAAAAIEY----LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV----DLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 754 KEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVpapeprtldstTELESELSQ 833
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL-----------AEEELELEE 697
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 834 LHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQL 912
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
145-712 |
1.74e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 145 TEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEER----------IEELENLLQQGGSG 214
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarsqansIQSQLEIIQEQARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 215 VTVTDHSKVYEMQNTIQILQMEKVESTKQIEDlenKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERL----- 289
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSELREAKRMYED---KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlh 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 290 --KLELSEAQQSALRQSDAAVEEETILPHsssvaevlrLQQALTDAENEIMRLRSLNQDI-SLAEDNQKLQMCV-----Q 361
Cdd:pfam15921 388 krEKELSLEKEQNKRLWDRDTGNSITIDH---------LRRELDDRNMEVQRLEALLKAMkSECQGQMERQMAAiqgknE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 362 TLEKEKSLLSQ---EKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELdK 438
Cdd:pfam15921 459 SLEKVSSLTAQlesTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-K 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 439 QNQEATKHVILIKDQLSKQQSEGDSVIKKLKE------ELAGEKQRT--------HQLE---DDKMNIIKELTVQKE--- 498
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKVIEILRQqienmtQLVGQHGRTagamqvekAQLEkeiNDRRLELQEFKILKDkkd 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 499 -KLTHSEQALSDLQLTKQKledkvedLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSEL--------TQSQTQ 569
Cdd:pfam15921 618 aKIRELEARVSDLELEKVK-------LVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYevlkrnfrNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 570 GSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLR---TENEELLEAYEEVRNQLEESVA-GNKQISLEK-- 643
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQkqiTAKRGQIDALQSKIQFLEEAMTnANKEKHFLKee 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 644 ---------TAMLEWEKAPLETELCRAEKRVLEEE-RKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELK 712
Cdd:pfam15921 771 knklsqelsTVATEKNKMAGELEVLRSQERRLKEKvANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
201-977 |
2.51e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 201 IEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKR 280
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 281 EMTEQCErlklELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRlqQALTDAENEIMRLrslnqdislAEDNQKLQMCV 360
Cdd:PTZ00121 1106 TETGKAE----EARKAEEAKKKAEDARKAEEARKAEDARKAEEAR--KAEDAKRVEIARK---------AEDARKAEEAR 1170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 361 QTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHE--NEILMAELEELDK 438
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEakKDAEEAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 439 QNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQAlSDLQLTKQKLE 518
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA-DEAKKKAEEAK 1328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 519 DKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVE 598
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 599 QLN--EHLEQVAFDLRTENEELLEAyEEVRNQLEESVAGN--KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQ 674
Cdd:PTZ00121 1409 ELKkaAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADeaKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 675 TVQELSSACSPDTSALQLEQERliqlNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLK 754
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 755 EKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL------QEELERLREQQSRVVPAPEPRTLDSTTELE 828
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 829 SELSQLHRIKGHLEE-EIKHHQ---KMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE----KDEEIKN 900
Cdd:PTZ00121 1644 EEKKKAEELKKAEEEnKIKAAEeakKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAeekkKAEELKK 1723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 901 LQKT----IEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLT 976
Cdd:PTZ00121 1724 AEEEnkikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
.
gi 755542115 977 K 977
Cdd:PTZ00121 1804 F 1804
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
302-812 |
3.72e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 3.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 302 RQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDIS-----LAEDNQKLQMCVQTLEKEKSLLSqEKEE 376
Cdd:PRK02224 170 RASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAeldeeIERYEEQREQARETRDEADEVLE-EHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 377 LQISLSKLSSEYEVIKSTATRDL----DLFSQVHDLKHNLEAKEQELNQSIHE-------NEILMAELEELDKQNQEATK 445
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETErereELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 446 HVilikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLV 525
Cdd:PRK02224 329 RL----EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 526 DQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSS-------RNVKD----DLLKERETQVQNLKQNL 594
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGsphvETIEEDRERVEELEAEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 595 S----EVEQLNEHLEQvAFDLRtENEELLEAYEEVRNQLEESVAGNKQISLEKT---AMLEWEKAPLETELCRAEKRVLE 667
Cdd:PRK02224 485 EdleeEVEEVEERLER-AEDLV-EAEDRIERLEERREDLEELIAERRETIEEKReraEELRERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 668 EERKYEQTVQELsSACSPDTSALQLEQERL------IQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQ 741
Cdd:PRK02224 563 AEEEAEEAREEV-AELNSKLAELKERIESLerirtlLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA 641
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755542115 742 LINEKEIcivklkeksSELQKELDKCAQTLRK-NETLRQTIEEKDRSLGSMKEENNHLqEELERLREQQSRV 812
Cdd:PRK02224 642 EFDEARI---------EEAREDKERAEEYLEQvEEKLDELREERDDLQAEIGAVENEL-EELEELRERREAL 703
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
16-807 |
3.95e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 3.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 16 EKHEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLqsAAQSAHLGSGSAPAasasssfsygVSHRVSAFH 95
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL--NKKIKDLGEEEQLR----------VKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 96 EDDMDFGDVIS-SQQEINRLSNEVSRLESELGHWRHIAqTKVQGAQSSDQTEICKLQNIIKELKQnrsqdlddhqhELSA 174
Cdd:TIGR02169 301 AEIASLERSIAeKERELEDAEERLAKLEAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKE-----------ELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 175 LQNAHQQKLTEiSRRHREELSDYEERIEELENllqqggsgvtvtdhsKVYEMQNTIQILQMEKVESTKQIEDLENKIKEI 254
Cdd:TIGR02169 369 LRAELEEVDKE-FAETRDELKDYREKLEKLKR---------------EINELKRELDRLQEELQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 255 HKRLSSAEHD-----QEVWKKEQER---------LEVEKREMTEQCERLKLELSEAQQ--SALRQSDAAVEEETIlphsS 318
Cdd:TIGR02169 433 EAKINELEEEkedkaLEIKKQEWKLeqlaadlskYEQELYDLKEEYDRVEKELSKLQRelAEAEAQARASEERVR----G 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 319 SVAEVLRLQQALTDAENEIMRLRSLNQDISLA--------------EDNQKLQMCVQTLEKEK----------------S 368
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGTVAQLGSVGERYATAievaagnrlnnvvvEDDAVAKEAIELLKRRKagratflplnkmrderR 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 369 LLSQEKEE----LQISLSKLSSEYE-----VIKST------------------ATRDLDLF-------------SQVHDL 408
Cdd:TIGR02169 589 DLSILSEDgvigFAVDLVEFDPKYEpafkyVFGDTlvvedieaarrlmgkyrmVTLEGELFeksgamtggsrapRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 409 KHNLEAKEQELNQSIHENEILMAEL-EELDKQNQEATKHVILIKDqLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 487
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLqSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 488 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLvdqlskseknnfdiqkENHELREHIRQNEEELSTVRSEltqsq 567
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL----------------EARLSHSRIPEIQAELSKLEEE----- 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 568 tqgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEEsvagnkqislektamL 647
Cdd:TIGR02169 807 ------------VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN---------------L 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 648 EWEKAPLETELCRAEKRVLEEERKYEQtvqelssacspdtsaLQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKE 727
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGD---------------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 728 TLSSSLEEQKQLTQLINEkEICIVKLKEKSSELQKELDKCAQTLRKNETLR----QTIEEKDRSLGSMKEENNHLQEELE 803
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003
|
....
gi 755542115 804 RLRE 807
Cdd:TIGR02169 1004 AILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
688-1396 |
5.50e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 5.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 688 SALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKC 767
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 768 AQTLRKNEtlrQTIEEKDRSLGSMKEENNHLQEELERLREQQSR---VVPAPEPRTLDSTTELE---SELSQLHRIKGHL 841
Cdd:TIGR02168 322 EAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLEtlrSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 842 EEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSIShtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQT 921
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE------ELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 922 ENSDIFQ-ETKVQSLSIEHGSEKHDLSKAETE-------------------RLVKGIK-----ERELEI-------KLLN 969
Cdd:TIGR02168 473 AEQALDAaERELAQLQARLDSLERLQENLEGFsegvkallknqsglsgilgVLSELISvdegyEAAIEAalggrlqAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 970 EKNTSLTKQIDQLSKDEVGKLTQII--QQKDLEIQALHARI-----SSASYSQDVVYLQQQLH---AYAMEREKVMVILN 1039
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPldSIKGTEIQGNDREIlknieGFLGVAKDLVKFDPKLRkalSYLLGGVLVVDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1040 EKTRENSQLKTEYHKVI---DIISAKeaALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTL 1116
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTldgDLVRPG--GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1117 LtvlqtsgtgseaggvnsNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVsvdsdnnskl 1196
Cdd:TIGR02168 711 E-----------------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI---------- 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1197 qvdyTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqssephessQ 1276
Cdd:TIGR02168 764 ----EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL------------E 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1277 LLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLikakSDQL 1356
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL----SEEL 903
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 755542115 1357 HSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKG 1396
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1411-1716 |
6.00e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 6.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1411 EYQALQEtnmkfSMMLREKEFECHSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1490
Cdd:COG1196 214 RYRELKE-----ELKELEAELLLLKLRELEAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1491 -------METSTLQNEVQRLRDKESRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENA 1563
Cdd:COG1196 288 aeeyellAELARLEQDIARLEERRRELEERLEELE----EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1564 SHQASVQVESLQEQLnmvsKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEwKKKAE 1643
Cdd:COG1196 364 EEALLEAEAELAEAE----EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-EEEEE 438
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755542115 1644 SLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGKVDKVL 1716
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
145-929 |
2.08e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.68 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 145 TEICKLQNIIKELKQNRSQDLDDHQHELSALQN-------------AHQQKLT---EISRRHREELSDYEERIEELENLL 208
Cdd:TIGR00606 182 TRYIKALETLRQVRQTQGQKVQEHQMELKYLKQykekaceirdqitSKEAQLEssrEIVKSYENELDPLKNRLKEIEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 209 qqggsgvtvtdhSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIH----KRLSSAEHDQEVWKKEQERLEVEKREMTE 284
Cdd:TIGR00606 262 ------------SKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFqgtdEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 285 QCERLKLELSEAQQSAL-RQSDAAVEEETILPHS-------SSVAEVLRLQQALTDAENEIM--------------RLRS 342
Cdd:TIGR00606 330 KLNKERRLLNQEKTELLvEQGRLQLQADRHQEHIrardsliQSLATRLELDGFERGPFSERQiknfhtlvierqedEAKT 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 343 LNQDISLAEDNQKLQM------------CVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDL-- 408
Cdd:TIGR00606 410 AAQLCADLQSKERLKQeqadeirdekkgLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELsk 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 409 ---KHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIK--DQLSKQQSEGDSVIKKLKEE-------LAGEK 476
Cdd:TIGR00606 490 aekNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTqmEMLTKDKMDKDEQIRKIKSRhsdeltsLLGYF 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 477 QRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDI------QKENHELREHIR 550
Cdd:TIGR00606 570 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsqdeESDLERLKEEIE 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 551 QNEEE---LSTVRSELTQSQTQGSSRNVKDDLLKERETQVqnlKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRN 627
Cdd:TIGR00606 650 KSSKQramLAGATAVYSQFITQLTDENQSCCPVCQRVFQT---EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 628 QLEESVAGNK---QISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSA--CSPDTSALQLEQERLIQLNQ 702
Cdd:TIGR00606 727 EMLGLAPGRQsiiDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvCLTDVTIMERFQMELKDVER 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 703 EKDFEIAELK-----KSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE-------LDKCAQT 770
Cdd:TIGR00606 807 KIAQQAAKLQgsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqigtnLQRRQQF 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 771 LRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQK 850
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 851 MIEDQNQSKLQLLQSLQEQKKELDE---------------FKYQHEQMSISHTRLFLEK-DEEIKNLQKTIEQIKAQLHE 914
Cdd:TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKhqekinedmrlmrqdIDTQKIQERWLQDNLTLRKrENELKEVEEELKQHLKEMGQ 1046
|
890
....*....|....*
gi 755542115 915 ERQDSQTENSDIFQE 929
Cdd:TIGR00606 1047 MQVLQMKQEHQKLEE 1061
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
695-1517 |
3.97e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 695 ERLIQL-NQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrk 773
Cdd:TIGR02168 213 ERYKELkAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 774 nETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapePRTLDsttELESELSQLHRIKGHLEEEIKHHQKMIE 853
Cdd:TIGR02168 291 -YALANEISRLEQQKQILRERLANLERQLEELEAQLEEL-----ESKLD---ELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 854 DQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtRLFLEKDEEIKNLQKTIEQIKAQLHEerqdsqtensdifQETKVQ 933
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIERLEARLER-------------LEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 934 SLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSasy 1013
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL-REELEEAEQALDAAERELAQLQARLDS--- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1014 sqdvvyLQQQLHAYAMEREKVMVILNEKtrenSQLKTEYHKVIDIIS-------AKEAALiklqdenkkmstrfessGQD 1086
Cdd:TIGR02168 494 ------LERLQENLEGFSEGVKALLKNQ----SGLSGILGVLSELISvdegyeaAIEAAL-----------------GGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1087 MFKETIQNLSRIIREkdieIDALSQKCQTLLTVL---QTSGTGSEAGGVNSNQFEE----LLQERDKLKQQVKK-MEEWK 1158
Cdd:TIGR02168 547 LQAVVVENLNAAKKA----IAFLKQNELGRVTFLpldSIKGTEIQGNDREILKNIEgflgVAKDLVKFDPKLRKaLSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1159 QQVMTtVQNMQhESAQLQEELHQLQAQVSVDSDnnsklqVDYTGLIQSYEQNETKLKNFGQelaqvQHSIGQLCNTKDLL 1238
Cdd:TIGR02168 623 GGVLV-VDDLD-NALELAKKLRPGYRIVTLDGD------LVRPGGVITGGSAKTNSSILER-----RREIEELEEKIEEL 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1239 LGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVER 1318
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKEL-----EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1319 KEHEQ----------ADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVN--------------ENELLR 1374
Cdd:TIGR02168 765 ELEERleeaeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRErleslerriaaterRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1375 QAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgk 1454
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE-- 922
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755542115 1455 agELNQLLNAVKSMQEKTVTFQQE-RDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRL 1517
Cdd:TIGR02168 923 --KLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
364-854 |
4.97e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 4.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 364 EKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQE- 442
Cdd:PRK03918 206 LREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEl 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 443 ------ATKHVILIK--DQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKmNIIKELTVQKEKLTHSEQALSDLQLTK 514
Cdd:PRK03918 286 kelkekAEEYIKLSEfyEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 515 QKLEDKVEDLvDQLSKSEKNNF--DIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQ 592
Cdd:PRK03918 365 EEAKAKKEEL-ERLKKRLTGLTpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGR 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 593 NLSEvEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKA----PLETELCRAEKRVLEE 668
Cdd:PRK03918 444 ELTE-EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 669 ERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEI 748
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYN 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 749 CIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL-----QEELERLREqqsrvvpapepRTLDS 823
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkysEEEYEELRE-----------EYLEL 671
|
490 500 510
....*....|....*....|....*....|.
gi 755542115 824 TTELESELSQLHRIKGHLEEEIKHHQKMIED 854
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1138-1697 |
6.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 6.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1138 EELLQERDKLKQQVKKMEEWKQqvmttvqnmqhesaqLQEELHQLQAQVSVDSDNNskLQVDYTGLIQSYEQNETKLKNF 1217
Cdd:COG1196 196 GELERQLEPLERQAEKAERYRE---------------LKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1218 GQELAQVQHSIGQLCNTKDLLLGKLDIMspqlssgssltsQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIR 1297
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEA------------QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1298 TLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEkdllIKAKSDQLHSSNENLANKVNENELLRQAV 1377
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1378 TNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREK--ALAFEQLLKEKEQGKA 1455
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlaELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1456 GELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ----------------------METSTLQNEVQRLRDKESRLNQE 1513
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeaaLEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1514 LQRLRDHLLESEdshTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLS 1593
Cdd:COG1196 563 IEYLKAAKAGRA---TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1594 VSQEQ----VKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRL 1669
Cdd:COG1196 640 VTLAGrlreVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580
....*....|....*....|....*...
gi 755542115 1670 TEQLDLKEEQIEELKKQNELHQEMLDDA 1697
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
187-536 |
1.43e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 187 SRRHREELSDYEERIEELENLLQqggsgvtvTDHSKVYEMQNTIQILQMEKVESTKQIEDLEN--------------KIK 252
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELS--------SLQSELRRIENRLDELSQELSDASRKIGEIEKeieqleqeeeklkeRLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 253 EIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEaqqsaLRQSDAAVEEETILPHSSSV-AEVLRLQQALT 331
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-----LEARLSHSRIPEIQAELSKLeEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 332 DAENEIMRLRSLNQdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyevIKSTATRDLDLFSQVHDLK-- 409
Cdd:TIGR02169 816 EIEQKLNRLTLEKE--YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---LEELEAALRDLESRLGDLKke 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 410 --------HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLsKQQSEGDSVIKKLKEELAGEKQRTHQ 481
Cdd:TIGR02169 891 rdeleaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 482 LEDDKMNIIKEltvqkekLTHSEQALSDLQLTKQKLE---DKVEDLVDQLSKSEKNNF 536
Cdd:TIGR02169 970 LEPVNMLAIQE-------YEEVLKRLDELKEKRAKLEeerKAILERIEEYEKKKREVF 1020
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
230-994 |
1.47e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 230 IQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVE 309
Cdd:pfam02463 196 KLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 310 EET----ILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQIslsKLS 385
Cdd:pfam02463 276 EEEkekkLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEI---KRE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 386 SEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKH---VILIKDQLSKQQSEGD 462
Cdd:pfam02463 353 AEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELarqLEDLLKEEKKEELEIL 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 463 SVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLS------KSEKNNF 536
Cdd:pfam02463 433 EEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSqkeskaRSGLKVL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 537 DIQKENHELR----EHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLR 612
Cdd:pfam02463 513 LALIKDGVGGriisAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 613 TENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQL 692
Cdd:pfam02463 593 SIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI-LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 693 EQERLIQLNQEKDFEIAELKKSI-----EQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICI----VKLKEKSSELQKE 763
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEIlrrqlEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIneelKLLKQKIDEEEEE 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 764 LDKCAQTLRKNETLRQTIEEKDRSLGSMKE--ENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHL 841
Cdd:pfam02463 752 EEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 842 EEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQT 921
Cdd:pfam02463 832 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL 911
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755542115 922 ENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQII 994
Cdd:pfam02463 912 LEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFE 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
966-1689 |
1.72e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 966 KLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMV--ILNEKTR 1043
Cdd:pfam15921 92 RRLNESNELHEKQKFYL-RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1044 ENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTS 1123
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1124 GTGSEaggvnsNQFEELLQE-RDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQV---------------S 1187
Cdd:pfam15921 251 KSESQ------NKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdleS 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1188 VDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQ 1267
Cdd:pfam15921 325 TVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLW 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1268 SSEPHESSQL--LQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKE- 1344
Cdd:pfam15921 405 DRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEl 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1345 --KDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENE------------KIVDASKGKET 1410
Cdd:pfam15921 485 taKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvqtecealKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1411 EYQALQETNM---------KFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQER 1479
Cdd:pfam15921 565 EILRQQIENMtqlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFkiLKDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1480 dqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLlesedSHTREALAAEDREAKLRKKVSVLE-EKLVSSSN 1558
Cdd:pfam15921 645 ---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-----RNKSEEMETTTNKLKMQLKSAQSElEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1559 AMENASHQASVQVESLQEQLNMVSKQRDetALQlsvSQEQVKQYALSLANLQmvlEHFQQEEKAMYSAELEKQNHLLAEW 1638
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQID--ALQ---SKIQFLEEAMTNANKE---KHFLKEEKNKLSQELSTVATEKNKM 788
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 1639 KKKAESLEGKVLSLQERLDEANAALDSAS-RLTEQLDLKEEQIEE---LKKQNEL 1689
Cdd:pfam15921 789 AGELEVLRSQERRLKEKVANMEVALDKASlQFAECQDIIQRQEQEsvrLKLQHTL 843
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
242-827 |
1.99e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 242 KQIEDLENKikEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQsalRQSDAAVEEETILPHSSSVA 321
Cdd:PRK02224 194 AQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEE---RREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 322 EVLR----LQQALTDAENEIMRLRSLNQDIsLAE------DNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyevI 391
Cdd:PRK02224 269 ETERereeLAEEVRDLRERLEELEEERDDL-LAEaglddaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE---A 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 392 KSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSegdsvikkLKEE 471
Cdd:PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED--------FLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 472 LAGEKQRTHqleddkmniikeltvqkeklthseQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQ 551
Cdd:PRK02224 417 LREERDELR------------------------EREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 552 NEEELSTVRSELTQSQTQGSSRNVKDDL---LKERETQVQNLKQNLSEVEQL--------NEHLEQVAfDLRTENEELLE 620
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERaedLVEAEDRIERLEERREDLEELiaerretiEEKRERAE-ELRERAAELEA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 621 AYEEVRNQLEEsVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVleeerkyeqTVQELSSACSPDTSALQLEQERLIQL 700
Cdd:PRK02224 552 EAEEKREAAAE-AEEEAEEAREEVAELNSKLAELKERIESLERIR---------TLLAAIADAEDEIERLREKREALAEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 701 NQEKDFEIAELKKSIEQMDTDHKrtKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQ- 779
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELREr 699
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 755542115 780 --TIEEKDRSLGSMKEENNHLQEELERLR-EQQSRVVPAPEpRTLDSTTEL 827
Cdd:PRK02224 700 reALENRVEALEALYDEAEELESMYGDLRaELRQRNVETLE-RMLNETFDL 749
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
151-644 |
2.17e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 151 QNIIKELKQNRSQDLDDHQHELSALQN--AHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTvtdhSKVYEMQN 228
Cdd:TIGR04523 175 LNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN----EKTTEISN 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 229 TIQILQMEKVESTKQIEDLENKIKEIhkrlssaehdqevwkkeqERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAV 308
Cdd:TIGR04523 251 TQTQLNQLKDEQNKIKKQLSEKQKEL------------------EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 309 EEetilphsssvaEVLRLQQALTDAENEImrlRSLNQDISlaednqKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEY 388
Cdd:TIGR04523 313 KS-----------ELKNQEKKLEEIQNQI---SQNNKIIS------QLNEQISQLKKELTNSESENSEKQRELEEKQNEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 389 EVIK----STATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQ---LSKQQSEG 461
Cdd:TIGR04523 373 EKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEikdLTNQDSVK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 462 DSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKE 541
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 542 NHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQvQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEA 621
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQ-KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
490 500
....*....|....*....|...
gi 755542115 622 YEEVRNQLEESVAGNKQISLEKT 644
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIK 634
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-634 |
5.44e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 5.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 5 ERLKKLYTDLEE-KHEASELQIKQQsssyRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPAASASSsf 83
Cdd:COG1196 213 ERYRELKEELKElEAELLLLKLREL----EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA-- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 84 sygvshrvsafheddmdfgdvissQQEINRLSNEVSRLESELGHwrhiaqtkvqgaqssdqteicklqniIKELKQNRSQ 163
Cdd:COG1196 287 ------------------------QAEEYELLAELARLEQDIAR--------------------------LEERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 164 DLDDHQHELSALQNAHQQKLTEISRRhREELSDYEERIEELENLLQQgGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQ 243
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAE-AEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 244 IEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQsdAAVEEETILPHSSSVAEV 323
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL--EEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 324 LRLQQALTDAENEIMRLRSLNQDISLAEDNQklqmcvqtLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDlfs 403
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADY--------EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE--- 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 404 qvhdlkhnlEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLE 483
Cdd:COG1196 542 ---------AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 484 DDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSEL 563
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755542115 564 TQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVA 634
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
3-813 |
6.99e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 6.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 3 QNERLKKLYTDLEEKHEASELQIKQQSSSYRSQLQQKEEEI----------NHLKARQLALQDELLRLQSAAQSAHLGSG 72
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEeeyllyldylKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 73 SAPAASASSSFSYGVSHRVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHWRHIAQT-KVQGAQSSDQTEICKLQ 151
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKkKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 152 NIIKELKQNRSQDLD--DHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDH---SKVYEM 226
Cdd:pfam02463 342 KELKELEIKREAEEEeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLElarQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 227 QNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEV---EKREMTEQCERLKLELSEAQQSALRQ 303
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDllkETQLVKLQEQLELLLSRQKLEERSQK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 304 SDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLlsQEKEELQISLSK 383
Cdd:pfam02463 502 ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV--RALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 384 LSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDS 463
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 464 VIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENH 543
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 544 ELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQnlsevEQLNEHLEQVAFDLRTENEELLEAYE 623
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV-----EEEKEEKLKAQEEELRALEEELKEEA 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 624 EVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQE 703
Cdd:pfam02463 815 ELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 704 KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQTLRKNETLRQTIEE 783
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE---LLLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830
....*....|....*....|....*....|
gi 755542115 784 KDRSLGSMKEENNHLQEELERLREQQSRVV 813
Cdd:pfam02463 972 LGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1136-1683 |
7.01e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1136 QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLK 1215
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1216 NFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDAT 1295
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1296 IRTLQENNHRLSDSVAASSEVERKEhEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ 1375
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1376 AVTNLKERILILEmDISKLKGENEKIVDASKGKETEYQALQETNMKFSmmLREKEFECHSMREKALAFEQLLKEKEQGKA 1455
Cdd:COG1196 472 AALLEAALAELLE-ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1456 GELN--------QLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDS 1527
Cdd:COG1196 549 QNIVveddevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1528 HTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQlnmvsKQRDETALQLSVSQEQVKQYALSLA 1607
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE-----AELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 1608 NLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEEL 1683
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
225-846 |
8.78e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 8.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 225 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSA----EHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSA 300
Cdd:TIGR00606 434 EKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSdrilELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 301 LRQSDAAVEE-ETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQD--ISLAEDNQKLQMCVQTLEKekslLSQEKEEL 377
Cdd:TIGR00606 514 DRKLRKLDQEmEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDelTSLLGYFPNKKQLEDWLHS----KSKEINQT 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 378 QISLSKLSSEYEVIKSTAtrdldlfSQVHDLKHNLEAKEQELNQSIHE---NEILMAELEELDKQNQEATKHVILikdqL 454
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNK-------NHINNELESKEEQLSSYEDKLFDvcgSQDEESDLERLKEEIEKSSKQRAM----L 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 455 SKQQSEGDSVIKKLKEELAG---EKQRTHQLEDDKMNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKS 531
Cdd:TIGR00606 659 AGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 532 EKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAF-- 609
Cdd:TIGR00606 736 QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAkl 815
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 610 ----------DLRTENEELLEAYEEVRNQLEE----SVAGNKQISL--EKTAMLEWEKAPLETELCRAEKRVLEEERKYE 673
Cdd:TIGR00606 816 qgsdldrtvqQVNQEKQEKQHELDTVVSKIELnrklIQDQQEQIQHlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 674 QtVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKeiCIVKL 753
Cdd:TIGR00606 896 E-VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYL 972
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 754 KEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTElESELSQ 833
Cdd:TIGR00606 973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG-QMQVLQ 1051
|
650
....*....|...
gi 755542115 834 LHRIKGHLEEEIK 846
Cdd:TIGR00606 1052 MKQEHQKLEENID 1064
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
547-873 |
1.04e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 547 EHIRQNEEELSTVRSELT--------QSQTQGSSRNVKDDlLKERETQV-----QNLKQNLSEVEQLNEHLEQVAFDLRT 613
Cdd:COG1196 182 EATEENLERLEDILGELErqleplerQAEKAERYRELKEE-LKELEAELlllklRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 614 ENEELLEAYEEVRNQLEEsvagnkqislektamlewekapLETELCRAEKRVLEEERKYEQTVQELSSACSpDTSALQLE 693
Cdd:COG1196 261 ELAELEAELEELRLELEE----------------------LELELEEAQAEEYELLAELARLEQDIARLEE-RRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 694 QERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQTLRK 773
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEALRA 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 774 NETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIE 853
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340
....*....|....*....|
gi 755542115 854 DQNQSKLQLLQSLQEQKKEL 873
Cdd:COG1196 475 LEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
995-1704 |
1.11e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 995 QQKDLEIQALHA----RISSASYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEyhkvidiISAKEAALIKLQ 1070
Cdd:TIGR02168 201 QLKSLERQAEKAerykELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1071 DENKKMSTRFESsgqdmFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQtsgtgseaggVNSNQFEELLQERDKLKQQ 1150
Cdd:TIGR02168 274 LEVSELEEEIEE-----LQKELYALANEISRLEQQKQILRERLANLERQLE----------ELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1151 VKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ 1230
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1231 LCNTKDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENN 1303
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELeeeleelQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1304 HRLSDSVAASSEVErKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnENELLRQavtNLKER 1383
Cdd:TIGR02168 499 ENLEGFSEGVKALL-KNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKK--AIAFLKQ---NELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1384 ILILEMDI---SKLKGENEKIVDASKGKETEYQALQETNMKFSM--------------------MLREKEFE-------- 1432
Cdd:TIGR02168 573 VTFLPLDSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnaleLAKKLRPGyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1433 -----CHSMREKALAFEQLLKEKEQgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKE 1507
Cdd:TIGR02168 653 dlvrpGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1508 SRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnamENASHQASVQVESLQEQLNMVSKQRDE 1587
Cdd:TIGR02168 729 SALRKDLARLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1588 TALQLSVSQEQVKQYALSLANLQMVLEHFQQeEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSas 1667
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA-- 877
|
730 740 750
....*....|....*....|....*....|....*..
gi 755542115 1668 rLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1704
Cdd:TIGR02168 878 -LLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1282-1704 |
1.34e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1282 VDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNL--LKEKDLLIKAKSDQLHSS 1359
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELpeLREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1360 NENLANKVNENELLRQAVTNLKERILILEMDISKLKG------ENEKIVDASKGKETEYQALQETNMKFSMMLREKEFEC 1433
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1434 HSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQqERDQVMLALKQKQMETSTLQNEVQRLR-DKESRLNQ 1512
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEE-RLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1513 ELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEE-KLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQ 1591
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1592 LSVSQEQVKQYALSLANLQMV---------LEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAA 1662
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELiklkelaeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 755542115 1663 LDSASRLTEQLDLKEEQIEELKKQ-NELHQEMLDDAQKKLMSL 1704
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKEL 597
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
759-1515 |
1.35e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 759 ELQKELDKCAQTLRKNE-TLRQTIEEKDRSLGSMKEENNHLQEEleRLREQQSRVvpapeprtlDSTTELESELSQLHRI 837
Cdd:pfam15921 89 DLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADI--RRRESQSQE---------DLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 838 KGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFK-------YQHEQMSISHTR--------LFLEKDEEIKNLQ 902
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEeasgkkiYEHDSMSTMHFRslgsaiskILRELDTEISYLK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 903 KTIEQIKAQLHEERQDSQTENSDIFQETKvqslsiehgsekhdlskaetERLVKGIKERELEIKLLNEKNTSLTKQIDQL 982
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLLQQHQ--------------------DRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 983 SKDevgklTQIIQQKDLEIQALHARISS---ASYSQDVVYLQQQLHAYA---MEREKVMVILNEK-----------TREN 1045
Cdd:pfam15921 298 QSQ-----LEIIQEQARNQNSMYMRQLSdleSTVSQLRSELREAKRMYEdkiEELEKQLVLANSEltearterdqfSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1046 SQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRfeSSGQDMfkeTIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGT 1125
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR--DTGNSI---TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1126 GSEAGGVNSNQFEE----LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYT 1201
Cdd:pfam15921 448 RQMAAIQGKNESLEkvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1202 GLIQSYEQnetkLKNFGQELAQVQHSigqlCNTKDLLLGKLD----IMSPQLSSGSSLTSQAAEPLRASQSSEPHessql 1277
Cdd:pfam15921 528 LKLQELQH----LKNEGDHLRNVQTE----CEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQ----- 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1278 LQQEVDDLRKSLQE-------KDATIRTLQEnnhRLSDSvaassEVERKEHEQADSE----IKQLKEKQEVLQNLLKEKD 1346
Cdd:pfam15921 595 LEKEINDRRLELQEfkilkdkKDAKIRELEA---RVSDL-----ELEKVKLVNAGSErlraVKDIKQERDQLLNEVKTSR 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1347 LLIKAKSDQLHSSNENLANKVNENEL----LRQAVTNLKERILILEMDISKLKGENEKIVDASKG-------KETEYQAL 1415
Cdd:pfam15921 667 NELNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGmqkqitaKRGQIDAL 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1416 QETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGK---AGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQME 1492
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKnkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
810 820
....*....|....*....|...
gi 755542115 1493 TSTLQNEVQRLRDKESRLNQELQ 1515
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
225-445 |
1.38e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 225 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQS 304
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 305 daAVEEETILPHSSSVAEVLRLQQALtdaeNEIMRLRsLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKL 384
Cdd:COG4942 118 --RQPPLALLLSPEDFLDAVRRLQYL----KYLAPAR-REQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755542115 385 SSEYEVIKSTATRdldlfsqvhdLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATK 445
Cdd:COG4942 191 EALKAERQKLLAR----------LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1256-1609 |
1.57e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 53.37 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1256 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATirTLQENNHRLSDSVAASSEVERKEHEQADSEIK------ 1329
Cdd:PLN02939 51 GKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKS--TSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGeqlsdf 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1330 QLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnenellrqavTNLKERILILEMDISKlkgENEKIVDASKGK- 1408
Cdd:PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK-----------EALQGKINILEMRLSE---TDARIKLAAQEKi 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1409 ETEYQALQETNMKFSMMLR-EKEFECHSMREKALafeQLLKEKEQGKAGELNQL---LNAVKSMQEKTVTFQQERDQVML 1484
Cdd:PLN02939 195 HVEILEEQLEKLRNELLIRgATEGLCVHSLSKEL---DVLKEENMLLKDDIQFLkaeLIEVAETEERVFKLEKERSLLDA 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1485 ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnameNAS 1564
Cdd:PLN02939 272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA-----NVS 346
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 755542115 1565 HQASVQVESLQEQLNMVSKQRD----ETALQLSVSQEQVKQYALSLANL 1609
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQasdhEIHSYIQLYQESIKEFQDTLSKL 395
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
132-807 |
2.25e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 132 AQTKVQGAQSSDQTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQG 211
Cdd:TIGR00618 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 212 GSGVTVTDHSKVYEM--QNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQ--EVWKKEQERLEVEKREMTEQCE 287
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQieQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRllQTLHSQEIHIRDAHEVATSIRE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 288 RLKLELSEAQQSALRQSDAAVEEETIlphSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQ-----MCVQT 362
Cdd:TIGR00618 370 ISCQQHTLTQHIHTLQQQKTTLTQKL---QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqryaeLCAAA 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 363 LEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrDLDLFSQVHDLKHNLEAK---EQELNQSIHENEILMAELEELDKQ 439
Cdd:TIGR00618 447 ITCTAQCEKLEKIHLQESAQSLKEREQQLQ-----TKEQIHLQETRKKAVVLArllELQEEPCPLCGSCIHPNPARQDID 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 440 NQEATKHVILikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKL-- 517
Cdd:TIGR00618 522 NPGPLTRRMQ---RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqd 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 518 ----EDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQN 593
Cdd:TIGR00618 599 ltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 594 LSEVEQLNEHLEQVAFDLrteneELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYE 673
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWK-----EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 674 QTVQELSSACSPDTSALQLEqerlIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKqltqlinekeicivkl 753
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAA----LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP---------------- 813
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 755542115 754 keksSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 807
Cdd:TIGR00618 814 ----SDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
477-1291 |
2.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 477 QRTHQLEDDKMNIikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 556
Cdd:TIGR02168 213 ERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 557 STVRSELtqsqtqgssrnvkDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEAYEEVRNQLEEsVAGN 636
Cdd:TIGR02168 291 YALANEI-------------SRLEQQKQILRERLANLERQLEELEAQLEE----LESKLDELAEELAELEEKLEE-LKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 637 KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSpdtsalqleqerliqlnqekdfEIAELKKSIE 716
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN----------------------EIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 717 QMDTDHKRTKETLSSslEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrknETLRQTIEEKDRSLGSMKEENN 796
Cdd:TIGR02168 411 RLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEAL---EELREELEEAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 797 HLQEELERLREQQSRVVPAPEprtldSTTELESELSQLHRIKGHLEEEIKHHQK----------------MIEDQNQSKL 860
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSE-----GVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavVVENLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 861 QLLQSLQEQKK-----ELDEFKYQHEQmsiSHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ----------DSQTENSD 925
Cdd:TIGR02168 561 AIAFLKQNELGrvtflPLDSIKGTEIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 926 IFQETKVQSL------------SIEHGSEKHDLSKAETERlvkGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQI 993
Cdd:TIGR02168 638 AKKLRPGYRIvtldgdlvrpggVITGGSAKTNSSILERRR---EIEELEEKIEELEEKIAELEKALAEL-RKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 994 IQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMviLNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDEN 1073
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1074 KKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLtvlqtsgtgseaggvnsNQFEELLQERDKLKQQVKK 1153
Cdd:TIGR02168 792 EQLKEELKAL-----REALDELRAELTLLNEEAANLRERLESLE-----------------RRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1154 MEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCN 1233
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 1234 TKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqSSEPHESSQLLQQEVDDLRKSLQE 1291
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLTLEEAEAL----ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
344-876 |
3.12e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 344 NQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEY--------------EVIKSTATRDLDLFSQVHDLK 409
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlklelllsnlkkkiQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 410 HNLEAKEQELNQsiheneiLMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK--- 486
Cdd:TIGR04523 232 DNIEKKQQEINE-------KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqk 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 487 -MNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSEltq 565
Cdd:TIGR04523 305 eQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE--- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 566 sqtqgssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTA 645
Cdd:TIGR04523 379 -------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 646 M------LEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACS--------------------PDTSALQLEQERLIQ 699
Cdd:TIGR04523 452 KeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklneekkeleekvkdltKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 700 LNQEKDFEIAELKKSIEQMDTDHKRT----------------KETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE 763
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKEnlekeideknkeieelKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 764 LDKCAQTLRKNETLRQTIEEKDRSLGSMKEEnnhLQEELERLREQQSRVVpAPEPRTLDSTTELESELSQLHRIKGHLEE 843
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNK---LKQEVKQIKETIKEIR-NKWPEIIKKIKESKTKIDDIIELMKDWLK 687
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 755542115 844 EIKHHQK-------------MIEDQNQSKLQLLQSLQEQKKELDEF 876
Cdd:TIGR04523 688 ELSLHYKkyitrmirikdlpKLEEKYKEIEKELKKLDEFSKELENI 733
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1476-1711 |
3.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 3.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1476 QQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRdhllesedshtREALAAEDREAKLRKKVSVLEEKLVS 1555
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----------RRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1556 SSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS--AELEKQNH 1633
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 1634 LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-SRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1711
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLlARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-992 |
4.25e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 4.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 244 IEDLENKIKEIHKRLSSAE--HDQEVWKKEQERLEVEKREMTEQCER-----LKLELSEAQQSALRQSDAAVEE------ 310
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNelHEKQKFYLRQSVIDLQTKLQEMQMERdamadIRRRESQSQEDLRNQLQNTVHEleaakc 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 311 --ETILPHSSSVAEVLRlqQALTDAENEIMRLRSLNQDISLAEDNQKLQ---MCVQTLEKEKSLLSQEKEELQISLSKL- 384
Cdd:pfam15921 160 lkEDMLEDSNTQIEQLR--KMMLSHEGVLQEIRSILVDFEEASGKKIYEhdsMSTMHFRSLGSAISKILRELDTEISYLk 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 385 ------SSEYEVIKSTATRDLDLFSQVHdlkhnleakEQELNQSIHENEILMAELEE----LDKQNQEATKHVILIKDQL 454
Cdd:pfam15921 238 grifpvEDQLEALKSESQNKIELLLQQH---------QDRIEQLISEHEVEITGLTEkassARSQANSIQSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 455 SKQQ-------SEGDSVIKKLKEELAgEKQRTHqlEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQ 527
Cdd:pfam15921 309 RNQNsmymrqlSDLESTVSQLRSELR-EAKRMY--EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 528 LSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRnvkDDLLKERETQVQ-NLKQNLSEVEQLNEHLEQ 606
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL---EALLKAMKSECQgQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 607 VAfdlrTENEELLEAYEEVRNQLEESVAgnKQISLEKTamlewekapletelcraekrvleeerkyEQTVQELSSACSPD 686
Cdd:pfam15921 463 VS----SLTAQLESTKEMLRKVVEELTA--KKMTLESS----------------------------ERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 687 TSALQLEQERLIQLNQEKDFEIAELKKSieQMDTDHKRTKETLSSSLEEQkqltqlinekeicivklkeksselQKELDK 766
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHL--KNEGDHLRNVQTECEALKLQ------------------------MAEKDK 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 767 CAQTLRKN-ETLRQTIEEKDRSLGSMKEENNHLQEEL--ERLREQQSRVVPAPEPRTLdstTELESELSQLHRIKGHLEE 843
Cdd:pfam15921 563 VIEILRQQiENMTQLVGQHGRTAGAMQVEKAQLEKEIndRRLELQEFKILKDKKDAKI---RELEARVSDLELEKVKLVN 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 844 EIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSishtRLFLEKDEEiknLQKTIEQIKAQLHEERQD-SQTE 922
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK----RNFRNKSEE---METTTNKLKMQLKSAQSElEQTR 712
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755542115 923 NS-DIFQETKVQSLSIEHGSEKHDLSKAETerlvkgIKERELEIKLLNEKNTSLTKQiDQLSKDEVGKLTQ 992
Cdd:pfam15921 713 NTlKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQFLEEAMTNANKE-KHFLKEEKNKLSQ 776
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1239-1701 |
6.81e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 6.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1239 LGKLDIMSPQLSSGSSLTSQAAEplraSQSSEPHESSQLLQQEVDDLRKSLQ----EKDATIRTLQENNHRLSdsvaass 1314
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEE----KEEKDLHERLNGLESELAELDEEIEryeeQREQARETRDEADEVLE------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1315 everkEHEQADSEIKQLKEKQEVLQnllkekdllikaksdqlhssnENLANKVNENELLRQAVTNLKERILILEMDISKL 1394
Cdd:PRK02224 245 -----EHEERREELETLEAEIEDLR---------------------ETIAETEREREELAEEVRDLRERLEELEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1395 KGE-------NEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgKAGELNQLLNAVKS 1467
Cdd:PRK02224 299 LAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE-EAAELESELEEARE 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1468 MQEKTVTFQQERDQVMLALKQKQMETST-----------LQNEVQRLRDKESRLNQELQRLRDHLLESED---------- 1526
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVdlgnaedfleeLREERDELREREAELEATLRTARERVEEAEAlleagkcpec 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1527 -------SHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASH--QASVQVESLQEQLNMVSKQRDETALQLSVSQE 1597
Cdd:PRK02224 458 gqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1598 QVKQyalslanlqmvlehfQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDL-- 1675
Cdd:PRK02224 538 RAEE---------------LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAia 602
|
490 500
....*....|....*....|....*..
gi 755542115 1676 -KEEQIEELKKQNELHQEMLDDAQKKL 1701
Cdd:PRK02224 603 dAEDEIERLREKREALAELNDERRERL 629
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
234-834 |
7.99e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 234 QMEKVEstKQIEDLEnKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREmteqcerLKLELSEAQQSALRQSDAAVEeeti 313
Cdd:COG4913 243 ALEDAR--EQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQ-------RRLELLEAELEELRAELARLE---- 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 314 lphsssvAEVLRLQQALTDAENEIMRLRSLNQDISLAEdnqklqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKS 393
Cdd:COG4913 309 -------AELERLEARLDALREELDELEAQIRGNGGDR--------LEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 394 TATRDLDLF----SQVHDLKHNLEAKEQELNQSIHEneiLMAELEELDKQNQEATKHVilikDQLSKQQSEGDSVIKKLK 469
Cdd:COG4913 374 PLPASAEEFaalrAEAAALLEALEEELEALEEALAE---AEAALRDLRRELRELEAEI----ASLERRKSNIPARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 470 EELAGEKQrthqLEDDKMNIIKEL-TVQKEkltHS------EQALSDLQLT---KQKLEDKVEDLVDQLSKSEKNNFD-- 537
Cdd:COG4913 447 DALAEALG----LDEAELPFVGELiEVRPE---EErwrgaiERVLGGFALTllvPPEHYAAALRWVNRLHLRGRLVYErv 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 538 --------------------IQKENHELREHIRQ------------NEEELSTVRSELTQS-QT-QGSSRNVKDDLLKER 583
Cdd:COG4913 520 rtglpdperprldpdslagkLDFKPHPFRAWLEAelgrrfdyvcvdSPEELRRHPRAITRAgQVkGNGTRHEKDDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 584 ETQV------QNLKQNLSEVEQLNEHLEQVAFDLRtENEELLEAYEEVRNQLEesvagnkqisleKTAMLEWEkaPLETE 657
Cdd:COG4913 600 SRYVlgfdnrAKLAALEAELAELEEELAEAEERLE-ALEAELDALQERREALQ------------RLAEYSWD--EIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 658 LCRAEKRVLEEERkyeqtvQELSSAcSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKetlssslEEQK 737
Cdd:COG4913 665 SAEREIAELEAEL------ERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-------EELD 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 738 QLTQLINEKEicivklKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPE 817
Cdd:COG4913 731 ELQDRLEAAE------DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660
....*....|....*....|
gi 755542115 818 ---PRTLDSTTELESELSQL 834
Cdd:COG4913 805 adlDADLESLPEYLALLDRL 824
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
404-966 |
8.06e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 8.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 404 QVHDLKHNLEAKEQELNQSIHENEILMAELEEL-DKQNQEATKHVILIKDqLSKQQSEGD---SVIKKLKEELAGEKQRT 479
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLnDKLKKNKDKINKLNSD-LSKINSEIKndkEQKNKLEVELNKLEKQK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 480 HQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDI--------------------- 538
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklelllsnlkkkiqkn 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 539 ----------QKENHELREHIRQNEEELSTVRSELTQSQTQ-----GSSRNVKDDL-------------LKERETQVQNL 590
Cdd:TIGR04523 214 kslesqiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlkDEQNKIKKQLsekqkeleqnnkkIKELEKQLNQL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 591 KQNLSEVEqlNEHLEQVAFDLRTENEELLEAYEEVRNQLEESvagNKQIS--------LEKTAM-LEWEKAPLETELCRA 661
Cdd:TIGR04523 294 KSEISDLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQN---NKIISqlneqisqLKKELTnSESENSEKQRELEEK 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 662 EKRVLEEERKYEQTVQELSSACSpDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQ 741
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLES-QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 742 LINEKEICIVKLKEKSSELQKELDKCAQTLRKNET----LRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpape 817
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL----- 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 818 prtLDSTTELESELSQLHRIKGHLEEEIKHhqkmiEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTrlflEKDEE 897
Cdd:TIGR04523 523 ---KEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE----EKQEL 590
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 898 IKNLQKTIEQIKAQLhEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIK 966
Cdd:TIGR04523 591 IDQKEKEKKDLIKEI-EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-567 |
9.15e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 9.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 273 ERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDIslaed 352
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDL----- 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 353 nQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrdldlfSQVHDLKHNLEAKEQElnQSIHENEILMAE 432
Cdd:COG4913 688 -AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE----------EELDELQDRLEAAEDL--ARLELRALLEER 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 433 LEELDKQNQEATkhvilIKDQLSKQQSEGDSVIKKLKEELAgEKQRTHQLEDDkmNIIKELTVQKEKLTHSEQALSdlQL 512
Cdd:COG4913 755 FAAALGDAVERE-----LRENLEERIDALRARLNRAEEELE-RAMRAFNREWP--AETADLDADLESLPEYLALLD--RL 824
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 513 TKQKLEDKVEDLVDQLSKSEKNNF-DIQkenHELREHIRQNEEELSTVRSELTQSQ 567
Cdd:COG4913 825 EEDGLPEYEERFKELLNENSIEFVaDLL---SKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
565-984 |
1.00e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 565 QSQTQGSSRNVKDDLLKERET----QVQNLKQNLSEVEQLNEHLE---QVAFDLRTENEELLEAYEEVRNQLEESVAGNK 637
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdlheRLNGLESELAELDEEIERYEeqrEQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 638 QISlEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLiqlnqekDFEIAELKKSIEQ 717
Cdd:PRK02224 262 DLR-ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD-DADAEAVEARREEL-------EDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 718 MDTDHKRTKETLSSSLEEQKQLTQLINEkeicivkLKEKSSELQKELDKCAQTLRKNET----LRQTIEEKDRSLGSMKE 793
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEE-------LREEAAELESELEEAREAVEDRREeieeLEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 794 ENNHLQEELERLREQQSRVVPapepRTLDSTTELESELSQLHRIKGHLEE----------EIKHHQKMIEDQNQSKLQLL 863
Cdd:PRK02224 406 DLGNAEDFLEELREERDELRE----REAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 864 QslqeqkkELDEFKYQHEQMSISHTRLflekdEEIKNLQKTIEQI--KAQLHEERQDSQTENSDIfQETKVQSL---SIE 938
Cdd:PRK02224 482 A-------ELEDLEEEVEEVEERLERA-----EDLVEAEDRIERLeeRREDLEELIAERRETIEE-KRERAEELrerAAE 548
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 755542115 939 HGSEKHDLSKAETERLVKGIKERElEIKLLNEKNTSLTKQIDQLSK 984
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEARE-EVAELNSKLAELKERIESLER 593
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
157-637 |
1.21e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 157 LKQNRSQDLDDHQHELSALQNAHQQKLTEIS-------------RRHREE----LSDYEERIEELENLlqqggsgvtvtd 219
Cdd:PRK02224 189 LDQLKAQIEEKEEKDLHERLNGLESELAELDeeieryeeqreqaRETRDEadevLEEHEERREELETL------------ 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 220 HSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQS 299
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 300 ALRQSDaaveeetilphsssvaEVLRLQQALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQi 379
Cdd:PRK02224 337 AQAHNE----------------EAESLREDADDLEERAEELRE-----EAAELESELEEAREAVEDRREEIEELEEEIE- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 380 SLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN----LEAKEQELNQSIHENEILMAELEELD-KQNQEATKHVILIKDQl 454
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREreaeLEATLRTARERVEEAEALLEAGKCPEcGQPVEGSPHVETIEED- 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 455 SKQQSEGDSVIKKLKEELAGEKQRTHQLEDdkmniIKELTVQKEKLTHSEQALSDLQLTKqklEDKVEDLVDQLSKSEKN 534
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEELIAER---RETIEEKRERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 535 NFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAfDLRTE 614
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALA-ELNDE 624
|
490 500
....*....|....*....|...
gi 755542115 615 NEELLEAYEEVRNQLEESVAGNK 637
Cdd:PRK02224 625 RRERLAEKRERKRELEAEFDEAR 647
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
541-856 |
1.91e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 541 ENHELREHIRQNEEELSTVRSELTQSQTQGSSrnVKDDLLKERETQVQNLKqNLSEVEQLNEHLEQVAFDLRTENEELLE 620
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTM--TENEFLNQLLHIVQHQK-AVSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 621 AYEEvRNQLEESVAGnKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEqtvqelssacspdtsalqLEQERliql 700
Cdd:pfam17380 311 EVER-RRKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRE------------------LERIR---- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 701 NQEKDFEIAELKKsIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQtlrknETLRQT 780
Cdd:pfam17380 367 QEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ-----REVRRL 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755542115 781 IEEKDRSLGSMKEENNHLQEELERLREQQSRvvPAPEPRTLDSTTELESELSQLHRIKghLEEEIK-HHQKMIEDQN 856
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEE--RKRKKLELEKEKRDRKRAEEQRRKI--LEKELEeRKQAMIEEER 513
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
106-630 |
2.20e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.51 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 106 SSQQEINRLSNEVSRLESELghwrhiaqTKVQGAQSSDQTEICKLQNIIKELKQ-----------------NRSQDLDDH 168
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEI--------KTAESDLSMELEKNNYYKELEERHMKiindpvyknrnyindyfKYKNDIENK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 169 QHELSALqNAHQQKLTEISRRHREELSDYEE------RIEELENLLQQggsgvTVTDHSKVYEMQNTIQILQMEKVESTK 242
Cdd:PRK01156 311 KQILSNI-DAEINKYHAIIKKLSVLQKDYNDyikkksRYDDLNNQILE-----LEGYEMDYNSYLKSIESLKKKIEEYSK 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 243 QIEDLENKIKEIHKRlssAEHDQEVWKKEQERLEVEKREMTEQCERLklelsEAQQSALRQSDAAVEEETILPHSSSVAE 322
Cdd:PRK01156 385 NIERMSAFISEILKI---QEIDPDAIKKELNEINVKLQDISSKVSSL-----NQRIRALRENLDELSRNMEMLNGQSVCP 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 323 VLrlqqALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDL--D 400
Cdd:PRK01156 457 VC----GTTLGEEKSNHIIN-----HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE-EINKSINEYNKieS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 401 LFSQVHDLKHNL-EAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKD-QLSKQQSEGDSVIKKLKEELAGEKQR 478
Cdd:PRK01156 527 ARADLEDIKIKInELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEI 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 479 THQLEDDKM---NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKseknnfdiqkenhelrehIRQNEEE 555
Cdd:PRK01156 607 EIGFPDDKSyidKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE------------------IDSIIPD 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 556 LSTVRSELTQSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLE 630
Cdd:PRK01156 669 LKEITSRINDIEDN----------LKKSRKALDDAKANRARLESTIE-------ILRTRINELSDRINDINETLE 726
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1263-1695 |
2.73e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1263 LRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSE-------IKQLKEKQ 1335
Cdd:pfam05483 279 LQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvVTEFEATT 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1336 EVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENEllrqAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQAL 1415
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1416 QETNMKFSMMLREKEFECHSMREKALAF----EQLLKEKEQGKAGELNQLLNAVK--------SMQEKTVTfqQERDQVM 1483
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIktseEHYLKEVEDLKTELEKEKLKNIEltahcdklLLENKELT--QEASDMT 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1484 LALKQKQ--------------METSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVL 1549
Cdd:pfam05483 513 LELKKHQediinckkqeermlKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1550 EEKLVSSSNAMENASHqasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysaelE 1629
Cdd:pfam05483 593 ENKCNNLKKQIENKNK----NIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------------------Q 650
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755542115 1630 KQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLK-EEQIEELKKQNELHQEMLD 1695
Cdd:pfam05483 651 KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYD 717
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
351-914 |
3.46e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 351 EDNQKLQMCVQTLEKEKSLLSQEKEELQislSKLSSEYEvikstatrdldLFSQVHDLKHNLEAKEQELNQSIHENEILM 430
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAETE-----------LCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 431 AELEELDKQNQEATK----HVILIKDQLSKQQS----------EGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ 496
Cdd:pfam01576 85 EEEEERSQQLQNEKKkmqqHIQDLEEQLDEEEAarqklqlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 497 KEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVK 576
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 577 DDLLKERETQVQNLKQN-LSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQI--SLEKTAMLEWEKAP 653
Cdd:pfam01576 245 LQAALARLEEETAQKNNaLKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELedTLDTTAAQQELRSK 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 654 LETELCRAEKRVLEEERKYEQTVQELSS--ACSPDTSALQLEQERLIQLNQEK-----DFEIAELKKSIE-----QMDTD 721
Cdd:pfam01576 325 REQEVTELKKALEEETRSHEAQLQEMRQkhTQALEELTEQLEQAKRNKANLEKakqalESENAELQAELRtlqqaKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 722 HKRTKetlsssLEEQKQLTQL-INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSmkeennHLQE 800
Cdd:pfam01576 405 HKRKK------LEGQLQELQArLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES------QLQD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 801 ELERLREqqsrvvpapeprtldsttELESELSQLHRIKgHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQH 880
Cdd:pfam01576 473 TQELLQE------------------ETRQKLNLSTRLR-QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580 590
....*....|....*....|....*....|....
gi 755542115 881 EQMSISHTRLflekDEEIKNLQKTIEQIKAQLHE 914
Cdd:pfam01576 534 EEDAGTLEAL----EEGKKRLQRELEALTQQLEE 563
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
943-1553 |
4.85e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 943 KHDLSKAETERLVKGIKERELEIK-LLNEkntsLTKQIDQLSKD-----EVGKLTQIIQQKDLEIQALHARISSASYSQd 1016
Cdd:COG1196 169 KYKERKEEAERKLEATEENLERLEdILGE----LERQLEPLERQaekaeRYRELKEELKELEAELLLLKLRELEAELEE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1017 vvyLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKmstrfESSGQDMFKETIQNLS 1096
Cdd:COG1196 244 ---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-----LEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1097 RIIREKDIEIDALSQKCQTLLTVLQTSgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQ 1176
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1177 EELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ-LCNTKDLLLGKLDIMSPQLSSGSSL 1255
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1256 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRkSLQEKDATIRTLQENNHRLSDSVAASSEVErKEHEQADSEIKQLKEKQ 1335
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADY-EGFLEGVKAALLLAGLRGLAGAVAVLIGVE-AAYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1336 EVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQAL 1415
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1416 QETNMKFSMM-----LREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1490
Cdd:COG1196 631 RLEAALRRAVtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 1491 METSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDRE---AKLRKKVSVLEEKL 1553
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdlEELERELERLEREI 776
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
490-768 |
6.52e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 490 IKELTVQKEKLTHSEqALSDLQLTKQKLeDKVEDLVDQLSKSEKNNFDIQKENHElrEHIRQNEEELSTVRSELtqsqtq 569
Cdd:PRK05771 33 IEDLKEELSNERLRK-LRSLLTKLSEAL-DKLRSYLPKLNPLREEKKKVSVKSLE--ELIKDVEEELEKIEKEI------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 570 gssrNVKDDLLKERETQVQNLKQNLSEVEQL------------NEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 637
Cdd:PRK05771 103 ----KELEEEISELENEIKELEQEIERLEPWgnfdldlslllgFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 638 qisleKTAMLEWEKapletelcRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEqERLIQLNQEKDFEIAELKKSIEQ 717
Cdd:PRK05771 179 -----VYVVVVVLK--------ELSDEVEEELKKLGFERLELEEEGTPSELIREIK-EELEEIEKERESLLEELKELAKK 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 755542115 718 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVK---LKEKSSELQKELDKCA 768
Cdd:PRK05771 245 YLEELLALYEYLEIELERAEALSKFLKTDKTFAIEgwvPEDRVKKLKELIDKAT 298
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1478-1686 |
7.88e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1478 ERDQVML--ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALA-AEDREAKLRKKVSVLEEKLV 1554
Cdd:COG4913 247 AREQIELlePIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1555 SSSNAMENASHQasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysAELEKQNHL 1634
Cdd:COG4913 327 ELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------------EEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 755542115 1635 LAEWKKKAESLEGKvlsLQERLDEANAALdsaSRLTEQLDLKEEQIEELKKQ 1686
Cdd:COG4913 389 AAALLEALEEELEA---LEEALAEAEAAL---RDLRRELRELEAEIASLERR 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
90-808 |
9.31e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 90 RVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHWRHIaqtkvQGAQSSDQTEICKLQNIIKELKQNRSQDL---- 165
Cdd:pfam12128 222 QVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHL-----HFGYKSDETLIASRQEERQETSAELNQLLrtld 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 166 -------DDHQHELSALQNAHQQKLTEI----SRRHREELSDYEERIEELENL--------LQQGGSGVTVTDHSKVYEM 226
Cdd:pfam12128 297 dqwkekrDELNGELSAADAAVAKDRSELealeDQHGAFLDADIETAAADQEQLpswqseleNLEERLKALTGKHQDVTAK 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 227 QNT-IQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHD--QEVWKKEQERLEVEKREMTEQCERLKLELSEAQqsaLRQ 303
Cdd:pfam12128 377 YNRrRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDdlQALESELREQLEAGKLEFNEEEYRLKSRLGELK---LRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 304 SDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQ--KLQMCVQTLEKEKSLLSQEKEELqisl 381
Cdd:pfam12128 454 NQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQAseALRQASRRLEERQSALDELELQL---- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 382 sklsseyevikstatrdldlFSQVHDLKHNLEAKEQELNQSIheNEILMAEL-------EELDKQNQEATKHVILIKDQL 454
Cdd:pfam12128 530 --------------------FPQAGTLLHFLRKEAPDWEQSI--GKVISPELlhrtdldPEVWDGSVGGELNLYGVKLDL 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 455 SKQQ--------SEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVD 526
Cdd:pfam12128 588 KRIDvpewaaseEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKD 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 527 QLSKSeknnfdiqkenheLREHIRQNEEELSTVRSELTQ--SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHL 604
Cdd:pfam12128 668 KKNKA-------------LAERKDSANERLNSLEAQLKQldKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALL 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 605 EQVAFDLRTENEELLEAYEEvrnQLEESVAGnKQISLEKTAMLEWEKAPLETELCRAEKRvLEEERKYEQtvqelssacs 684
Cdd:pfam12128 735 KAAIAARRSGAKAELKALET---WYKRDLAS-LGVDPDVIAKLKREIRTLERKIERIAVR-RQEVLRYFD---------- 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 685 pdtsalqLEQERLIQLNQEKDFEIAELKKSIEQMdtdhkrtketlsssleeQKQLTQLINEKEICIVKLKEKSSELQKEL 764
Cdd:pfam12128 800 -------WYQETWLQRRPRLATQLSNIERAISEL-----------------QQQLARLIADTKLRRAKLEMERKASEKQQ 855
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 755542115 765 DKCAQTLRKNET---------LRQTIEEKDRSLGSMKEENNHLQEELERLREQ 808
Cdd:pfam12128 856 VRLSENLRGLRCemsklatlkEDANSEQAQGSIGERLAQLEDLKLKRDYLSES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
734-1012 |
1.11e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 734 EEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVV 813
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 814 PAPEPRTLDStTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDefkyQHEQMSISHTRLFLE 893
Cdd:COG1196 302 QDIARLEERR-RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA----EAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 894 KDEEIKNLQKTIEQIKAQLHEERQDSQTENSdifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNt 973
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEE---AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA- 452
|
250 260 270
....*....|....*....|....*....|....*....
gi 755542115 974 SLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSAS 1012
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
577-914 |
1.22e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.75 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 577 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLeesvagnkqisLEKTAMLEWEKAPLET 656
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-------KNREEVEQLKDLYRELRKSL-----------LANRFSFGPALDELEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 657 ELcraekRVLEEERkyeQTVQELSSACSPDTSALQLEQ--ERLIQLNQ------------EKDF--EIAELKKSIEQM-- 718
Cdd:PRK04778 173 QL-----ENLEEEF---SQFVELTESGDYVEAREILDQleEELAALEQimeeipellkelQTELpdQLQELKAGYRELve 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 719 ---DTDHKRTKETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGS----M 791
Cdd:PRK04778 245 egyHLDHLDIEKEIQDLKEQIDENLALLEELDL--DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDflehA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 792 KEENNHLQEELERLreQQSRVVPAPEprtLDSTTELESELSQLhrikghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKK 871
Cdd:PRK04778 323 KEQNKELKEEIDRV--KQSYTLNESE---LESVRQLEKQLESL-------EKQYDEITERIAEQEIAYSELQEELEEILK 390
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 755542115 872 ELDEFKYQHEQMSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 914
Cdd:PRK04778 391 QLEEIEKEQEKLSEMLQG--LRKDE--LEAREKLERYRNKLHE 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
162-620 |
1.40e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 162 SQDLDDHQHELSALQNAHQQKLTEIS---RRHREELSDYEERIEELENLLQqggsgvtvTDHSKVYEMQNTIQILQMEKV 238
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAE--------ELREEAAELESELEEAREAVE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 239 ESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQsalrqsdaaveeetilphss 318
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE-------------------- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 319 SVAEVLRLQQALTDAENEimrlrslnQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQiSLSKLSSEYEVIKSTATRD 398
Cdd:PRK02224 441 RVEEAEALLEAGKCPECG--------QPVEGSPHVETIEEDRERVEELEAELEDLEEEVE-EVEERLERAEDLVEAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 399 LDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEAtkhviliKDQLSKQQSEGDSV---IKKLKEELAGE 475
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK-------REAAAEAEEEAEEAreeVAELNSKLAEL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 476 KQRTHQLED--DKMNIIKELTVQKEKLTHSEQALSDLQ-LTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHE-LREHIRQ 551
Cdd:PRK02224 585 KERIESLERirTLLAAIADAEDEIERLREKREALAELNdERRERLAEKRERKRELEAEFDEARIEEAREDKErAEEYLEQ 664
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 552 NEEELSTVRSELTQSQTQ-GSSRNVKDDL--LKERETQVQNLKQNL----SEVEQLNEHLEQVAFDLRTENEELLE 620
Cdd:PRK02224 665 VEEKLDELREERDDLQAEiGAVENELEELeeLRERREALENRVEALealyDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
339-645 |
1.69e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 339 RLRSLNQD---ISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQIslsklssEYEVIKSTATRDLDLFSQVHDLKhnleaK 415
Cdd:COG5022 802 LLSLLGSRkeyRSYLACIIKLQ---KTIKREKKLRETEEVEFSL-------KAEVLIQKFGRSLKAKKRFSLLK-----K 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 416 EQELNQSIHENEILMAELEELDKQNQEATkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLeddKMNIIKELTV 495
Cdd:COG5022 867 ETIYLQSAQRVELAERQLQELKIDVKSIS--------SLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKK 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 496 QKEKLTHSEQalSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNV 575
Cdd:COG5022 936 LLNNIDLEEG--PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQE 1013
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755542115 576 KDDLLKERETQVQNLKQNL-------SEVEQLNEhLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTA 645
Cdd:COG5022 1014 STKQLKELPVEVAELQSASkiissesTELSILKP-LQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST 1089
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
408-803 |
1.74e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 408 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHvilikdqlskqqsegdsvIKKLKEELAGEKQRTHQLEDDKM 487
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQH------------------IEVLKESLTAKEQRAAILQTEVD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 488 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQ 567
Cdd:pfam10174 349 ALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 568 TQGSSRNVK----DDLLKERETQVQNLKQNLSEVEQlnEHLEQVAfDLRTENEELLEAYEEVRNQLEE------------ 631
Cdd:pfam10174 429 TDSSNTDTAlttlEEALSEKERIIERLKEQREREDR--ERLEELE-SLKKENKDLKEKVSALQPELTEkesslidlkeha 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 632 ---SVAGNKQISLEKTAMLEWEK-----APLETELCRAEKRVLEEERKYE-----QTVQELSSACSPDTSALQLEQERLI 698
Cdd:pfam10174 506 sslASSGLKKDSKLKSLEIAVEQkkeecSKLENQLKKAHNAEEAVRTNPEindriRLLEQEVARYKEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 699 QLNQE-------KDFEIAELKKSI-EQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE-----LD 765
Cdd:pfam10174 586 GILREvenekndKDKKIAELESLTlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEelmgaLE 665
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 755542115 766 KCAQTL----RKNETLRQTIEEKDRSLGSMK-EENNHLQEELE 803
Cdd:pfam10174 666 KTRQELdatkARLSSTQQSLAEKDGHLTNLRaERRKQLEEILE 708
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
412-844 |
2.11e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 412 LEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQ-----------------SEGDSVIKKLKEELAG 474
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETelcaeaeemrarlaarkQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 475 EKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIrqnEE 554
Cdd:pfam01576 87 EEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI---SE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 555 ELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQL----E 630
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 631 ESVAGNKQISLEKTAMLEWEKAPLETELCRAE-KRVLEEERKYEQTVQELSSACSPDTSALQLEQERLI-------QLNQ 702
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISElQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLdttaaqqELRS 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 703 EKDFEIAELKKSIE-----------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEiciVKLKEKSSELQKELDKCAQTL 771
Cdd:pfam01576 324 KREQEVTELKKALEeetrsheaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 772 RKNETLRQTIEEKDRSLGSMKEENNHLQEEL-ERLREQQSRV------VPAPEPRTLDSTTELESELSQLHRIKGHLEEE 844
Cdd:pfam01576 401 QDSEHKRKKLEGQLQELQARLSESERQRAELaEKLSKLQSELesvsslLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
577-1161 |
2.15e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 577 DDLLKEREtqvQNLKQNLSEVEQLNEHLEQVAFDLRtENEELLEAYEEVRNQLEESvagNKQISLEKTAMLEWEKAPLET 656
Cdd:PRK03918 192 EELIKEKE---KELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEEL---EKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 657 ELCRAEKRvlEEERKYEQTVQELSSacspdtsalqleqerlIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQ 736
Cdd:PRK03918 265 EERIEELK--KEIEELEEKVKELKE----------------LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 737 KQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgSMKEENNHLQEELERLREQQSRvvpap 816
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER---LKKRLTGLTPEKLEKELEELEK----- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 817 eprtldSTTELESELSQLHRIKGHLEEEIKHHQKMIEdqnqSKLQLLQSLQEQKKELDEfkyQHEQmsishtRLFLEKDE 896
Cdd:PRK03918 399 ------AKEEIEEEISKITARIGELKKEIKELKKAIE----ELKKAKGKCPVCGRELTE---EHRK------ELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 897 EIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSL--------SIEHGSEKHDLSKAETE-RLVKGIKERELEIKl 967
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlkELEEKLKKYNLEELEKKaEEYEKLKEKLIKLK- 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 968 lnEKNTSLTKQIDQLS--KDEVGKLTQIIQQKDLEIQALHARISSASYS--QDVVYLQQQLHAYAMEREKVMVILNEKTR 1043
Cdd:PRK03918 539 --GEIKSLKKELEKLEelKKKLAELEKKLDELEEELAELLKELEELGFEsvEELEERLKELEPFYNEYLELKDAEKELER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1044 ENSQLKTEYHKvidiISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLltvlqts 1123
Cdd:PRK03918 617 EEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL------- 685
|
570 580 590
....*....|....*....|....*....|....*...
gi 755542115 1124 gtgseaggvnSNQFEELLQERDKLKQQVKKMEEWKQQV 1161
Cdd:PRK03918 686 ----------EKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
478-1163 |
2.50e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 478 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQkledkveDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 557
Cdd:pfam12128 228 RDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHF-------GYKSDETLIASRQEERQETSAELNQLLRTLDDQWK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 558 TVRSELTQ--SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELlEAYEEVRNQLEESVAG 635
Cdd:pfam12128 301 EKRDELNGelSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERL-KALTGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 636 NKQ-ISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIA----- 709
Cdd:pfam12128 380 RRSkIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNqatat 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 710 -ELKKSIEQMDTDHKRTKETLSSSLEE----QKQLTQL----------INEKEICIVKLKEKSSELQKELDKCAQTLRkn 774
Cdd:pfam12128 460 pELLLQLENFDERIERAREEQEAANAEverlQSELRQArkrrdqaseaLRQASRRLEERQSALDELELQLFPQAGTLL-- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 775 ETLRQTIEEKDRSLGSMKEENNHLQEELE-----------------RLREQQSRVvpapePRTLDSTTELESELSQLhri 837
Cdd:pfam12128 538 HFLRKEAPDWEQSIGKVISPELLHRTDLDpevwdgsvggelnlygvKLDLKRIDV-----PEWAASEEELRERLDKA--- 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 838 kghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ 917
Cdd:pfam12128 610 ----EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 918 DSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL-----EIKLLNEKNTSLTKQIDQLSKDEVGKL-- 990
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallkaAIAARRSGAKAELKALETWYKRDLASLgv 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 991 -TQIIQQKDLEIQALHARISSASYSQDVV--YLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALI 1067
Cdd:pfam12128 766 dPDVIAKLKREIRTLERKIERIAVRRQEVlrYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1068 KLQDENKKMSTRfessgqdmfketiqnLSRIIREKDIEIDALSQkcqtlLTVLQTSGTGSEAGGVNSNQFEELLQERDKL 1147
Cdd:pfam12128 846 MERKASEKQQVR---------------LSENLRGLRCEMSKLAT-----LKEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
730
....*....|....*.
gi 755542115 1148 KQQVKKMEEWKQQVMT 1163
Cdd:pfam12128 906 SESVKKYVEHFKNVIA 921
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
348-794 |
2.60e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 45.84 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 348 SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN---LEAKEQELNQSIH 424
Cdd:pfam05622 11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQLQEEnfrLETARDDYRIKCE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 425 ENEILMAEL----EELDKQNQEAT--KHVILI----KDQLSKQQSEGDSVIKKLkEELAGEKQRTHQLEDDKMNIIKELT 494
Cdd:pfam05622 91 ELEKEVLELqhrnEELTSLAEEAQalKDEMDIlresSDKVKKLEATVETYKKKL-EDLGDLRRQVKLLEERNAEYMQRTL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 495 VQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHEL------REHIRQNEEELSTVRSELTQSQT 568
Cdd:pfam05622 170 QLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLealqkeKERLIIERDTLRETNEELRCAQL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 569 QGSSRNVKDDLLKERETQVQNLKQNLSEVEqLNEHLEQvafdLRTENEELLEAYEEVRNQLEESVagnkQISLEKTamlE 648
Cdd:pfam05622 250 QQAELSQADALLSPSSDPGDNLAAEIMPAE-IREKLIR----LQHENKMLRLGQEGSYRERLTEL----QQLLEDA---N 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 649 WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTdhkRTKET 728
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQ-SELQKKKEQIEE---LEPKQ 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 729 LSSSLEEQKQLTQLINEKEICIVKLK-------EKSSELQKELDKCAQTLRKNE--TLRQTIEEKDRSLGSMKEE 794
Cdd:pfam05622 394 DSNLAQKIDELQEALRKKDEDMKAMEerykkyvEKAKSVIKTLDPKQNPASPPEiqALKNQLLEKDKKIEHLERD 468
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1568-1700 |
2.66e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.34 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1568 SVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLehfqqeekAMYSAELEKQNHLLAEWKKKAESLEG 1647
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL--------SAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 755542115 1648 KVLSLQERLDEANAALDSASRlteQLDLKEEQIEELKKQNELHQEMLDDAQKK 1700
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALA---QVELLNQQIAALRRQLAALEAALDASEKR 166
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-631 |
2.79e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 5 ERLKKLYTDLEEKHEASELQIKQQsssyRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPaasasssfs 84
Cdd:COG1196 235 RELEAELEELEAELEELEAELEEL----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE--------- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 85 ygvshrvsafheddmdfGDVISSQQEINRLSNEVSRLESELGHWrhiaqtkvQGAQSSDQTEIcklqniikELKQNRSQD 164
Cdd:COG1196 302 -----------------QDIARLEERRRELEERLEELEEELAEL--------EEELEELEEEL--------EELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 165 LDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQggsgvtvtdhskVYEMQNTIQILQMEKVESTKQI 244
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA------------AAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 245 EDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQsdAAVEEETILPHSSSVAEVL 324
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL--EAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 325 RLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEEL--QISLSKLSSEYEVIKSTATRDL--D 400
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqNIVVEDDEVAAAAIEYLKAAKAgrA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 401 LFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTH 480
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 481 QLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVR 560
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 561 SELTQSQTQGSSRNVKDDL--------LKERETQVQNLKQ--------NLSEVEQLNEHLEQVAF------DLRTENEEL 618
Cdd:COG1196 735 EELLEELLEEEELLEEEALeelpeppdLEELERELERLEReiealgpvNLLAIEEYEELEERYDFlseqreDLEEARETL 814
|
650 660
....*....|....*....|....*...
gi 755542115 619 L---------------EAYEEVRNQLEE 631
Cdd:COG1196 815 EeaieeidretrerflETFDAVNENFQE 842
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
108-527 |
2.87e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 108 QQEINRLSNEVSRLESELGHWRH-IAQTKVQGAQSSDQTEICKLQNIIKELkQNRSQDLDDHQHELSALQnahqqkltei 186
Cdd:COG4717 94 QEELEELEEELEELEAELEELREeLEKLEKLLQLLPLYQELEALEAELAEL-PERLEELEERLEELRELE---------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 187 srrhrEELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEhDQE 266
Cdd:COG4717 163 -----EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE-NEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 267 VWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAV----------------EEETILPHSSSVAEVLRLQQAL 330
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllallflllaREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 331 TDAE-NEIMRLRSLNQDISLAEDNQKLQMcVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDLDLFSQVHDLK 409
Cdd:COG4717 317 EEEElEELLAALGLPPDLSPEELLELLDR-IEELQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 410 HNLEAKEQELNQSIHE-NEILMAELEELDKQNQEATKHVIlikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK-- 486
Cdd:COG4717 395 EEYQELKEELEELEEQlEELLGELEELLEALDEEELEEEL---EELEEELEELEEELEELREELAELEAELEQLEEDGel 471
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 755542115 487 MNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQ 527
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1448-1711 |
2.89e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1448 KEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ-----RLRDHLL 1522
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKlaaqeKIHVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1523 ESEDSHTREALAAEDR-----EAKLRKKVSVLEEKLVSSSNAMEnASHQASVQVESLQEQLNMVSKQRD--ETALQ---- 1591
Cdd:PLN02939 200 EEQLEKLRNELLIRGAteglcVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEERVFKLEKERSllDASLReles 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1592 -LSVSQEQV------KQYAL--SLANLQMVLEhfQQEEKAMYSAELEKQNHllaewkkkaeSLEGKVLSLQERLDEANAA 1662
Cdd:PLN02939 279 kFIVAQEDVsklsplQYDCWweKVENLQDLLD--RATNQVEKAALVLDQNQ----------DLRDKVDKLEASLKEANVS 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 1663 LDSASR---LTEQLDLKEEQI----EELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1711
Cdd:PLN02939 347 KFSSYKvelLQQKLKLLEERLqasdHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1148-1701 |
3.85e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1148 KQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHS 1227
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1228 IGQLCNTKDLLLGKLDIM---SPQLSSGSSLTSQAAEPLRASQSS----------EPHESSQLLQQEVDDLRKSLQEKDA 1294
Cdd:TIGR02169 394 LEKLKREINELKRELDRLqeeLQRLSEELADLNAAIAGIEAKINEleeekedkalEIKKQEWKLEQLAADLSKYEQELYD 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1295 TIRTLQENNHRLSDsvaASSEVERKEHEQADSEIKQLKEKQEVLqnLLKEKDLLIKAKSDQLHSSNEN------------ 1362
Cdd:TIGR02169 474 LKEEYDRVEKELSK---LQRELAEAEAQARASEERVRGGRAVEE--VLKASIQGVHGTVAQLGSVGERyataievaagnr 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1363 LANKVNENELL-RQAVTNLKERIL--------------ILEMDISKLKGENEKIVDA----SKGKETEYQALQETNM--- 1420
Cdd:TIGR02169 549 LNNVVVEDDAVaKEAIELLKRRKAgratflplnkmrdeRRDLSILSEDGVIGFAVDLvefdPKYEPAFKYVFGDTLVved 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1421 ---------KFSMMLREKE-FE-------CHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVM 1483
Cdd:TIGR02169 629 ieaarrlmgKYRMVTLEGElFEksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1484 LALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAEDREAKLRKKVSVLEEKLVSSSNAMEN- 1562
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----QEIENVKSELKELEARIEELEEDLHKLEEALNDl 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1563 ASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQ------QEEKAMYSAELEKQNHLLA 1636
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQeqridlKEQIKSIEKEIENLNGKKE 864
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 1637 EWKKKAESLEGKVLSLQERLDEANAALDsasRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKL 1701
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERD---ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1458-1693 |
4.02e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1458 LNQLLNAVKSMQEKTVTFQQERdqvmlaLKQKQMETSTLQNEVQRLRDK------ESRLNQELQRLRDhlLESEdshtre 1531
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQ------LPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSE--LESQ------ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1532 ALAAEDREAKLRKKVSVLEEKLVSSSNAMENAShqASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQM 1611
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1612 VLehfqQEEKAMYSAELEKQnhlLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEE-LKKQNELH 1690
Cdd:COG3206 306 QL----QQEAQRILASLEAE---LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESlLQRLEEAR 378
|
...
gi 755542115 1691 QEM 1693
Cdd:COG3206 379 LAE 381
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
478-1197 |
4.23e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 478 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 557
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 558 TVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 637
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 638 QISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQ 717
Cdd:pfam02463 360 ELEKLQEKLEQLEEE-LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 718 MDTDhKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNH 797
Cdd:pfam02463 439 IELK-QGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 798 LQEELERLREQQSRVVPAP--EPRTLDSTTELESELSQLHRIKGHLEE-----------EIKHHQKMIEDQNQSKLQLLQ 864
Cdd:pfam02463 518 DGVGGRIISAHGRLGDLGVavENYKVAISTAVIVEVSATADEVEERQKlvraltelplgARKLRLLIPKLKLPLKSIAVL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 865 SLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKH 944
Cdd:pfam02463 598 EIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLE 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 945 DLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQL 1024
Cdd:pfam02463 678 IQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRL 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1025 HAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKlqDENKKMSTRFESSGQDMFKETIQNLSRIIREKDI 1104
Cdd:pfam02463 758 KKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE--ELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1105 EIDALsqkcqtLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQA 1184
Cdd:pfam02463 836 EELAL------ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
730
....*....|...
gi 755542115 1185 QVSVDSDNNSKLQ 1197
Cdd:pfam02463 910 NLLEEKENEIEER 922
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
689-1008 |
4.75e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 689 ALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLsssLEEQKQLTQLINEKEIcivkLKEKSSELQKELDKCA 768
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYE----LLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 769 QTLRKnetLRQTIEEKDRSLGSMKEENNHLQEELERLREQQsrvvpapeprtldstTELESELSQLHRIKGHLEEEIKHH 848
Cdd:COG1196 309 ERRRE---LEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 849 QKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQ 928
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 929 ETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARI 1008
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1318-1585 |
5.42e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1318 RKEHEQADSEI---KQLKEKQEVLQNLLkEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERIlilEMDISKL 1394
Cdd:pfam17380 302 RQEKEEKAREVerrRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEI---AMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1395 KgENEKIVDASKGKETEYQALQETNMKFSMMLREKEfecHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVT 1474
Cdd:pfam17380 378 R-ELERLQMERQQKNERVRQELEAARKVKILEEERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1475 FQQERDQVMLALKQKQMEtstlQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLV 1554
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270
....*....|....*....|....*....|....*.
gi 755542115 1555 SSSNAMENASHQASVQVE-----SLQEQLNMVSKQR 1585
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmeerrRIQEQMRKATEER 565
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
714-1664 |
5.64e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 714 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgsmkE 793
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN------E 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 794 ENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKEL 873
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 874 DEFKYQHEqmsishtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETER 953
Cdd:pfam02463 317 KESEKEKK-----------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 954 LVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEvgkltqiIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREK 1033
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLE-------DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1034 VMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIrekdieidalsQKC 1113
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI-----------ISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1114 QTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNN 1193
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1194 SKLQVDYTGLIQS-------YEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAS 1266
Cdd:pfam02463 608 LDKATLEADEDDKrakvvegILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1267 QSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKD 1346
Cdd:pfam02463 688 ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1347 LLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMML 1426
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1427 REKEFECHSMREKALAFEQLLKEKEQGKAGELNQ--LLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLR 1504
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEqkLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1505 DKESRLNQELQRLRDHLLESEDshtreaLAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQ 1584
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKE------KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1585 RDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMY---SAELEKQN-------------HLLAEWKKKAESLEGK 1648
Cdd:pfam02463 1002 EEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLElggSAELRLEDpddpfsggieisaRPPGKGVKNLDLLSGG 1081
|
970 980 990
....*....|....*....|....*....|..
gi 755542115 1649 ---------VLSLQER-------LDEANAALD 1664
Cdd:pfam02463 1082 ektlvalalIFAIQKYkpapfylLDEIDAALD 1113
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1310-1547 |
5.65e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1310 VAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEM 1389
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1390 DISKLKGENEKIVDASKGKETEYQALQETNmKFSMMLREKEFechsmrEKALAFEQLLKEKEQGKAGELNQLLNAVKSMQ 1469
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQP-PLALLLSPEDF------LDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1470 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLR---DHLLESEDSHTREALAAEDREAKLRKKV 1546
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelAELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 755542115 1547 S 1547
Cdd:COG4942 244 P 244
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1497-1664 |
5.85e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1497 QNEVQRLRDKESRLNQELQRLRDHLLESEDSHT---REALAAEDREAKLRKKVSVLEEKLVSSSNAM--ENASHQASVQV 1571
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVemaRELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1572 ESLQEQL---NMVSK----QRDETALQLSVSQEQVKQYALSLANLQMVLE-------HFQQEEKAMYSAE---------L 1628
Cdd:PRK04863 358 EELEERLeeqNEVVEeadeQQEENEARAEAAEEEVDELKSQLADYQQALDvqqtraiQYQQAVQALERAKqlcglpdltA 437
|
170 180 190
....*....|....*....|....*....|....*.
gi 755542115 1629 EKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALD 1664
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1265-1715 |
5.93e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1265 ASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAAS---SEVERKEHEQADSEIKQLKEKQEVLQNL 1341
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAeekAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1342 --LKEKDLLIKAKSDQLHSSN------ENLANKVNENELLRQAVTNLKERiliLEMDISKLKGENEKIVDASKGKETEYQ 1413
Cdd:PTZ00121 1394 deAKKKAEEDKKKADELKKAAaakkkaDEAKKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1414 ALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMET 1493
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1494 STLQNEVQRLRDK---------ESRLNQELQRlRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENAS 1564
Cdd:PTZ00121 1551 LKKAEELKKAEEKkkaeeakkaEEDKNMALRK-AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1565 hqasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLL--AEWKKKA 1642
Cdd:PTZ00121 1630 -----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKA 1704
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755542115 1643 ESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEqiEELKKQNELHQEmlDDAQKKLMSLVNSTEGKVDKV 1715
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE--EDKKKAEEAKKD--EEEKKKIAHLKKEEEKKAEEI 1773
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
667-977 |
5.99e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 5.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 667 EEERKYEQTVQELSsacspdtsaLQLEQERLIQLNQEKDFEI--AELKKSIEQMDTDHKRTKETLSSSLEEQKQltqlin 744
Cdd:COG5022 810 KEYRSYLACIIKLQ---------KTIKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLLKKETIYLQSA------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 745 ekeICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSL-GSMKEENNHLQEELERL----REQQSRVVPAPEPR 819
Cdd:COG5022 875 ---QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLsSDLIENLEFKTELIARLkkllNNIDLEEGPSIEYV 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 820 TLDSTTELESELSQLHRIKGHLEEEIKHHQKMIED---QNQSKLQLLQSLQEQKKELDEFKYQHEQMSI-SHTRLFLEKD 895
Cdd:COG5022 952 KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSELKNFKKELAELSKQYGALQESTKQLKElPVEVAELQSA 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 896 EEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGsekHDLSKAETERLVKGIKERELEIKLLNEKNTSL 975
Cdd:COG5022 1032 SKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENS---LLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
..
gi 755542115 976 TK 977
Cdd:COG5022 1109 VK 1110
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1489-1704 |
6.13e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1489 KQMETSTLQNE-VQRLRDKESRLNQ--------ELQRLRDHLLESEDshtrEALAAEDREAKLRKKVSVLEEKLvsssNA 1559
Cdd:TIGR02168 200 RQLKSLERQAEkAERYKELKAELRElelallvlRLEELREELEELQE----ELKEAEEELEELTAELQELEEKL----EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1560 MENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEekamysaeLEKQNHLLAEWK 1639
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK--------LDELAEELAELE 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 1640 KKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1704
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
412-646 |
6.45e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 44.76 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 412 LEAKEQELNQSIHENEILMAELEElDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIK 491
Cdd:pfam18971 612 VKKAQKDLEKSLRKREHLEKEVEK-KLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSD 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 492 ELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNnFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGS 571
Cdd:pfam18971 691 KLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKD-LGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 572 S---RNVKDDLLKERET-QVQNLKQNLSEVEQLNE--HLEQVAFDLRTENEELL----------------EAYEEVRNQL 629
Cdd:pfam18971 770 SdleNSVKDVIINQKVTdKVDNLNQAVSVAKAMGDfsRVEQVLADLKNFSKEQLaqqaqknedfntgknsELYQSVKNSV 849
|
250
....*....|....*..
gi 755542115 630 EESVAGNKQISLEKTAM 646
Cdd:pfam18971 850 NKTLVGNGLSGIEATAL 866
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
301-983 |
6.59e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 301 LRQSDAAVEEETILPhsssvaEVLRLQQALTDAENEIMRLRSLNQDIslaednQKLQMCVQTLEKEKSLLSQEKEELQIS 380
Cdd:pfam12128 227 IRDIQAIAGIMKIRP------EFTKLQQEFNTLESAELRLSHLHFGY------KSDETLIASRQEERQETSAELNQLLRT 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 381 LSKlsseyEVIKSTATRDLDLFSQVHDLK---HNLEAKEQELNQSIHEN-EILMAELEELDKQNQEATKHVILIKDQLSK 456
Cdd:pfam12128 295 LDD-----QWKEKRDELNGELSAADAAVAkdrSELEALEDQHGAFLDADiETAAADQEQLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 457 QQS---EGDSVIKKLKEELAGEKQRTHQ-LEDDKMNIIKELTVQKEKLTHSEQALSDlQLTKQKLEDKVEDLVDQLSKSE 532
Cdd:pfam12128 370 HQDvtaKYNRRRSKIKEQNNRDIAGIKDkLAKIREARDRQLAVAEDDLQALESELRE-QLEAGKLEFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 533 -KNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSrnVKDDLL---KERETQVQNLKQNLSEVEQLNEHLEQVA 608
Cdd:pfam12128 449 lKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVER--LQSELRqarKRRDQASEALRQASRRLEERQSALDELE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 609 FDLRTENEELLEAYEEVRNQLEESVAgnKQISLEktamlewekapletELCRAEkrvLEEERKYEQTVQELSsacspdTS 688
Cdd:pfam12128 527 LQLFPQAGTLLHFLRKEAPDWEQSIG--KVISPE--------------LLHRTD---LDPEVWDGSVGGELN------LY 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 689 ALQLEQERL-----IQLNQEKDFEIAELKKSIEQMDTDHKRTKETLS--------SSLEEQKQLTQLINEKEicivKLKE 755
Cdd:pfam12128 582 GVKLDLKRIdvpewAASEEELRERLDKAEEALQSAREKQAAAEEQLVqangelekASREETFARTALKNARL----DLRR 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 756 KSSELQKELDKCAQTLRknETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLH 835
Cdd:pfam12128 658 LFDEKQSEKDKKNKALA--ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 836 RIKGHLEEEIKHHQKMIEDQNQsklqllqslqeqkKELDEFKYQHEQMSishtrlflEKDEEIKNLQKTIEQIKAQLHEE 915
Cdd:pfam12128 736 AAIAARRSGAKAELKALETWYK-------------RDLASLGVDPDVIA--------KLKREIRTLERKIERIAVRRQEV 794
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 916 RQDSQTENSDIFQETkvQSLSIEHGSEKHDLSKAETErLVKGIKERELEIKLLNEKNTSLTKQIDQLS 983
Cdd:pfam12128 795 LRYFDWYQETWLQRR--PRLATQLSNIERAISELQQQ-LARLIADTKLRRAKLEMERKASEKQQVRLS 859
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
470-671 |
6.96e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 470 EELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHI 549
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 550 RQNEEELSTVRSELTQSQTQG------SSRNVKD---------DLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTE 614
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPplalllSPEDFLDavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755542115 615 NEEL------LEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERK 671
Cdd:COG4942 180 LAELeeeraaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
221-807 |
7.05e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 221 SKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSa 300
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 301 lrQSDAAVEEETILPHSSSVAEVLRLQQ-ALTDAENEIMRLRSLNQDIslaEDNQKLqmcvqtLEKEKSLLsQEKEELQI 379
Cdd:PRK01156 262 --ESDLSMELEKNNYYKELEERHMKIINdPVYKNRNYINDYFKYKNDI---ENKKQI------LSNIDAEI-NKYHAIIK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 380 SLSKLSSEYEVIKSTATRDLDLFSQVHDLK-----HNLEAKEQE-LNQSIHENEIlmaELEELDKQNQEATKHVILIKDQ 453
Cdd:PRK01156 330 KLSVLQKDYNDYIKKKSRYDDLNNQILELEgyemdYNSYLKSIEsLKKKIEEYSK---NIERMSAFISEILKIQEIDPDA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 454 LSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKeklTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEK 533
Cdd:PRK01156 407 IKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 534 NNFDIQKENHELREHIRQNEEELSTV------RSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEqv 607
Cdd:PRK01156 484 KIREIEIEVKDIDEKIVDLKKRKEYLeseeinKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE-- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 608 afDLRTENEELLEA--------YEEVRNQLEESvagNKQIS--LEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQ 677
Cdd:PRK01156 562 --DLDSKRTSWLNAlavislidIETNRSRSNEI---KKQLNdlESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYN 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 678 ELSsacspdtsalqlEQERLIQLNQEKdfeIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKS 757
Cdd:PRK01156 637 EIQ------------ENKILIEKLRGK---IDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 755542115 758 SELQkeldkcaQTLRKNETLRQTIEEKDRSLGSMKEENNHLQeELERLRE 807
Cdd:PRK01156 702 STIE-------ILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLRE 743
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1317-1698 |
8.87e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1317 ERKEHEQADSEIKQLKEKQEVLQNLLKE-----KDLLIKAKSDQLHSSNENLANKVNENELLRQaVTNLKERILILEMDI 1391
Cdd:pfam07888 11 EESHGEEGGTDMLLVVPRAELLQNRLEEclqerAELLQAQEAANRQREKEKERYKRDREQWERQ-RRELESRVAELKEEL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1392 SKLKGENEKIVDASKGKETEYQALQEtnmKFSMMLREKEFECHSMREKALAFeQLLKEKEQGKAGELNQLLNAVKSMQEK 1471
Cdd:pfam07888 90 RQSREKHEELEEKYKELSASSEELSE---EKDALLAQRAAHEARIRELEEDI-KTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1472 TVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTrEALAAEDREAKLRKKVSVLEE 1551
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT-TAHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1552 KLVSSSNAmenashqasvqVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLE----HFQQEEKAMY-SA 1626
Cdd:pfam07888 245 RLNASERK-----------VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALRegraRWAQERETLQqSA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1627 ELEKQN--HLLAEWKKKAESLEG--------KVLSLQER-------------LDEANAALDSASRLTEQLDLKEEQIEEL 1683
Cdd:pfam07888 314 EADKDRieKLSAELQRLEERLQEermereklEVELGREKdcnrvqlsesrreLQELKASLRVAQKEKEQLQAEKQELLEY 393
|
410
....*....|....*
gi 755542115 1684 KKQNELHQEMLDDAQ 1698
Cdd:pfam07888 394 IRQLEQRLETVADAK 408
|
|
| GRAB |
pfam10375 |
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type ... |
1707-1752 |
1.03e-03 |
|
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type proteins. This domain is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The Arf small GTPase is localized to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane.
Pssm-ID: 431241 Cd Length: 49 Bit Score: 38.75 E-value: 1.03e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 755542115 1707 STEGKVDKVLMRNLFIGHFHTPK--HQRHEVLRLMGSILGVKREEMEQ 1752
Cdd:pfam10375 1 SSEDTVDRQLVTNLLLSFLSIPRgdTKKFEILQLIANLLEWDDEQREQ 48
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-411 |
1.10e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 107 SQQEINRLSNEVSRLESElghwrhIAQTKVQGAQSSDQTEIC--KLQNIIKELKQNRSqDLDDHQHELSALQ-------- 176
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLeqEIENVKSELKELEA-RIEELEEDLHKLEealndlea 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 177 ----------NAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTvTDHSKVYEMQNTIQILQMEKVESTKQIED 246
Cdd:TIGR02169 787 rlshsripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 247 LENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQsdaaveEETILPHSSSVAEVLRL 326
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL------KAKLEALEEELSEIEDP 939
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 327 QQALTDAENEIMRLRSLNQDIslaednQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVH 406
Cdd:TIGR02169 940 KGEDEEIPEEELSLEDVQAEL------QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
....*
gi 755542115 407 DLKHN 411
Cdd:TIGR02169 1014 KKKRE 1018
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
240-1185 |
1.14e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 240 STKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQsaLRQSDAAVEEETILPHSSS 319
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK--LDNEIKALKSRKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 320 VAEVLRLQQALTDAENEIMRLRSLNQDI--SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIkstatr 397
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLNDLYHNHQRTvrEKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRH------ 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 398 dldlfsQVHDLKHNLEAKEQELNQSIHeneilmaELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQ 477
Cdd:TIGR00606 360 ------QEHIRARDSLIQSLATRLELD-------GFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 478 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQK-ENHELREHIRQNEEEL 556
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKaEKNSLTETLKKEVKSL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 557 STVRSELTQSQTQGSSRNVKDDLLKERETQVQNL-KQNLSEVEQLNEHLEQVAFDLRTeneelLEAYEEVRNQLEE---S 632
Cdd:TIGR00606 507 QNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLtKDKMDKDEQIRKIKSRHSDELTS-----LLGYFPNKKQLEDwlhS 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 633 VAGNKQISLEKTAMLEWEKAPLET---ELCRAEKRVLEEERKYEQTVQELSSaCSPDTSALQLEQERLIQLNQEKDF--- 706
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQnknHINNELESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEIEKSSKQRAMlag 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 707 EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIV----KLKEKSSELQKELDKCAQTLRKNETLRQTIE 782
Cdd:TIGR00606 661 ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRlapdKLKSTESELKKKEKRRDEMLGLAPGRQSIID 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 783 EKDRSLGSMKEENNHLQEELERLR---EQQSRVVPAPEPRtLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSK 859
Cdd:TIGR00606 741 LKEKEIPELRNKLQKVNRDIQRLKndiEEQETLLGTIMPE-EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 860 LQLLQSLQEQKKEldefkyqheqmsishtrlflEKDEEIKNLQKTIEQIKaQLHEERQDSQTENSDIFQETKVQSLSIEH 939
Cdd:TIGR00606 820 LDRTVQQVNQEKQ--------------------EKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSEKLQIGT 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 940 GSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLtkqiDQLSKDEVGKLTQIIQQKDLEIQALHARIssasysQDVVY 1019
Cdd:TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL----ETFLEKDQQEKEELISSKETSNKKAQDKV------NDIKE 948
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1020 LQQQLHAYAMEREKvmVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQdmfKETIQNLSRII 1099
Cdd:TIGR00606 949 KVKNIHGYMKDIEN--KIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKI---QERWLQDNLTL 1023
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1100 REKDIEIDALSQKCQTLLtvlqtsgtgseaGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEEL 1179
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHL------------KEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091
|
....*.
gi 755542115 1180 HQLQAQ 1185
Cdd:TIGR00606 1092 REPQFR 1097
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
408-855 |
1.21e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 408 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 487
Cdd:pfam05483 224 IQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKM 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 488 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELT--- 564
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiit 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 565 -QSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQL---NEHLEQVAFDLRTENEEL---LEAYEEVRNQLEESVAGNK 637
Cdd:pfam05483 384 mELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQELiflLQAREKEIHDLEIQLTAIK 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 638 QISLEKTAMLEWEKAPLETELCRAekrvleeerkyeqtvQELSSACSpdtsALQLEQERLIQlnqEKDFEIAELKKSIEQ 717
Cdd:pfam05483 464 TSEEHYLKEVEDLKTELEKEKLKN---------------IELTAHCD----KLLLENKELTQ---EASDMTLELKKHQED 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 718 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-------KNETLRQTIEEKDRSLGS 790
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlKKEKQMKILENKCNNLKK 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 791 MKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 855
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1322-1696 |
1.30e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1322 EQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ----AVTNLKERILILEMDISKLkge 1397
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEALERQKEAI--- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1398 nekivdaskgkETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQ 1477
Cdd:TIGR02169 243 -----------ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1478 ERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLEsedshtrealAAEDREAKLRKKVSVLEEklvsss 1557
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE----------EYAELKEELEDLRAELEE------ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1558 namENASHQASVQ-VESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS------AELEK 1630
Cdd:TIGR02169 376 ---VDKEFAETRDeLKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekedkaLEIKK 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 1631 QNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDD 1696
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1442-1671 |
1.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1442 AFEQLLKEKEQGKA-GELNQLLNAVKSMQEKTVTFQQERDqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDH 1520
Cdd:COG4913 240 AHEALEDAREQIELlEPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1521 LLESEDSHT--REALAAE--DREAKLRKKVSVLEEKLvsssnamenasHQASVQVESLQEQLNMVSKQRDETALQLSVSQ 1596
Cdd:COG4913 318 LDALREELDelEAQIRGNggDRLEQLEREIERLEREL-----------EERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755542115 1597 EQVKQYALSLANLQMVLehfqQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTE 1671
Cdd:COG4913 387 AEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
696-917 |
1.68e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 696 RLIQLNQEKD-----------FEIAELKKSIE--------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivklKEK 756
Cdd:PRK05771 10 LIVTLKSYKDevlealhelgvVHIEDLKEELSnerlrklrSLLTKLSEALDKLRSYLPKLNPLREEKKKVS------VKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 757 SSELQKELDKcaqtlrknetlrqTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapEP-RTLDSTTELESELSQLH 835
Cdd:PRK05771 84 LEELIKDVEE-------------ELEKIEKEIKELEEEISELENEIKELEQEIERL----EPwGNFDLDLSLLLGFKYVS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 836 RIKGHLEEEIKHHQKMIEDQNQSKLQ-------------LLQSLQEQKKELDEFKYqhEQMSISHTRLFLE----KDEEI 898
Cdd:PRK05771 147 VFVGTVPEDKLEELKLESDVENVEYIstdkgyvyvvvvvLKELSDEVEEELKKLGF--ERLELEEEGTPSElireIKEEL 224
|
250
....*....|....*....
gi 755542115 899 KNLQKTIEQIKAQLHEERQ 917
Cdd:PRK05771 225 EEIEKERESLLEELKELAK 243
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
404-539 |
1.69e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 404 QVHDLKHNLEAKEQELNQSIHENEILMAELEELdkqnqeatkhviliKDQLSKQQSEGDSVIKKLKEELAGE-KQRTHQL 482
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKL--------------KEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA 582
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 755542115 483 EDDKMNIIKELTvQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQ 539
Cdd:PRK00409 583 KKEADEIIKELR-QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
334-783 |
1.73e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 334 ENEIMRLRSLNQDISLAEDNQKLqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYevikstatRDLDLFSQVHDLKHNLE 413
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEE---YAELQEELEELEEELEELEAELEELREEL--------EKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 414 AKEQELNQSIHENEILMAELEELDkqnqeatkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMN-IIKE 492
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELR---------------ELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 493 LTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNN---------------FDIQKENHELREHIRqNEEELS 557
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearlllliaaalLALLGLGGSLLSLIL-TIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 558 TVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEvEQLNEHLEQVAFDLRTENEELLEAY---EEVRNQLEESVA 634
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE-EELEELLAALGLPPDLSPEELLELLdriEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 635 GNKQISL-----EKTAMLEWEKAPLETELcraeKRVLEEERKYEQTVQELSSAcspdtsALQLEQERLIQLNQEKDFEIA 709
Cdd:COG4717 359 LEEELQLeeleqEIAALLAEAGVEDEEEL----RAALEQAEEYQELKEELEEL------EEQLEELLGELEELLEALDEE 428
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 710 ELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLIN--EKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEE 783
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-758 |
1.90e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 526 DQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNvkdDLLKERETQVQNLKQNLSEVEQLNEHLE 605
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 606 QVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKApleteLCRAEKRVLEEERKYEQTVQELSSACSP 685
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----LAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755542115 686 DTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSS 758
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1261-1490 |
1.99e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1261 EPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEverKEHEQADSEIKQLKEKQEVLQN 1340
Cdd:PRK05771 38 EELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE---EELEKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1341 ----LLKEKDLLIKAKSdqLHSSNENLankvNENELLRQAVTNLKERILilemDISKLKGENEKIVDASKGKETEY---Q 1413
Cdd:PRK05771 115 eikeLEQEIERLEPWGN--FDLDLSLL----LGFKYVSVFVGTVPEDKL----EELKLESDVENVEYISTDKGYVYvvvV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755542115 1414 ALQETNMKFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1490
Cdd:PRK05771 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIreIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
586-823 |
2.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 586 QVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISlEKTAMLEWEKAPLETELCRAEKRV 665
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 666 LEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFE---IAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQL 742
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLkylAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 743 INEkeicivkLKEKSSELQKELDKCAQTLRKnetLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLD 822
Cdd:COG4942 180 LAE-------LEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
.
gi 755542115 823 S 823
Cdd:COG4942 250 A 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1134-1360 |
2.16e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1134 SNQFEELLQERDKLKQQVKKMEEWKQQvmttvqnMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETK 1213
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAA-------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1214 LKNFGQELAQVQHSIGQLCNTkDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLR 1286
Cdd:COG4942 92 IAELRAELEAQKEELAELLRA-LYRLGRQPPLALLLSPEDFLDAvrrlqylKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755542115 1287 KSLQEKDATIRTLQENNHRLSDSVAASSEVE---RKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSN 1360
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
333-986 |
2.21e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 333 AENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLK--H 410
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEelR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 411 NLEAKEQELNQSIHEN---EILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRT--HQLEDD 485
Cdd:TIGR00618 274 AQEAVLEETQERINRArkaAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRllQTLHSQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 486 KMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKvEDLVDQLSKSEKNNFDIQKENHE-LREHIRQNEEELSTVRSELT 564
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQREQATiDTRTSAFRDLQGQLAHAKKQ 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 565 QSQTQGSSRNVKD------DLLKERETQVQNLKQNLSEVEQLNEHLEQVAfdLRTENEELLEAYEEVRNQLEESVAGNKQ 638
Cdd:TIGR00618 433 QELQQRYAELCAAaitctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIH--LQETRKKAVVLARLLELQEEPCPLCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 639 ISLEKTAMLEWEKAPLETELCRAEKRVL---EEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQ---------EKDF 706
Cdd:TIGR00618 511 IHPNPARQDIDNPGPLTRRMQRGEQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQcdnrskediPNLQ 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 707 EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKeicIVKLKEKSSELQKELDKCAQTLRknETLRQTIEEKDR 786
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV---RLHLQQCSQELALKLTALHALQL--TLTQERVREHAL 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 787 SLGSMKEENNHLQEELERLREQQSRVVPAPEPrtldsttELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSL 866
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKE-------MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 867 QEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIkAQLHEERQDSQTENSDIFQETKvqSLSIEHGSEKHDL 946
Cdd:TIGR00618 739 DALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLK--TLEAEIGQEIPSD 815
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 755542115 947 SKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDE 986
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1273-1587 |
2.23e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1273 ESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQAD-SEIKQLKEKQEVLQNLLKEKDLLI-- 1349
Cdd:COG5022 907 EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLhEVESKLKETSEEYEDLLKKSTILVre 986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1350 -KAKSDQLHSSNENLANKVNENELLRQAVTNLKER---ILILEMDISKLKGEnekivDASKGKETEYQALQETNMKFSMM 1425
Cdd:COG5022 987 gNKANSELKNFKKELAELSKQYGALQESTKQLKELpveVAELQSASKIISSE-----STELSILKPLQKLKGLLLLENNQ 1061
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1426 LREKEFECHSMREKALAFEQLLKEKEQGKaGELNQLLNAVKSMQEKTVTFQQERDQ----VMLALKQKQMETSTLQNEVQ 1501
Cdd:COG5022 1062 LQARYKALKLRRENSLLDDKQLYQLESTE-NLLKTINVKDLEVTNRNLVKPANVLQfivaQMIKLNLLQEISKFLSQLVN 1140
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1502 RLRDKESRLNQELQRLRDHLLESedshTREALAAEDREAKlrkkvsvLEEKLVSSSNAMENASHQASVQVESLQEQL-NM 1580
Cdd:COG5022 1141 TLEPVFQKLSVLQLELDGLFWEA----NLEALPSPPPFAA-------LSEKRLYQSALYDEKSKLSSSEVNDLKNELiAL 1209
|
....*..
gi 755542115 1581 VSKQRDE 1587
Cdd:COG5022 1210 FSKIFSG 1216
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
103-606 |
2.27e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 103 DVISSQQEINRLSNEVSRleselghwrhiAQTKVQGAQSSDQTEICKLQNIIKELKQNRSQ--DLDDHQHEL-SALQNAH 179
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISN-----------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKikELEKQLNQLkSEISDLN 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 180 QQKLTEISRRHREELSDYEERIEELENLLQQGGSGVT--------------------VTDHSKVYEMQNTIQILQMEKVE 239
Cdd:TIGR04523 302 NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISqlneqisqlkkeltnsesenSEKQRELEEKQNEIEKLKKENQS 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 240 STKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSS 319
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 320 VAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMcvqtLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdl 399
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKK----LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKE-- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 400 dLFSQVHDLKHNLEAKEQELNQSIHENEILmaeleeldkQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRT 479
Cdd:TIGR04523 536 -KESKISDLEDELNKDDFELKKENLEKEID---------EKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 480 HQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTV 559
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDW 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 755542115 560 RSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQ 606
Cdd:TIGR04523 686 LKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELEN 732
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
144-378 |
2.28e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 144 QTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKV 223
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 224 YEMQNTIQILQMEKVESTK-------QIEDLENKIKEIHKRLSSAEHD-----------QEVWKKEQERLEVEKREMTEQ 285
Cdd:pfam12128 743 SGAKAELKALETWYKRDLAslgvdpdVIAKLKREIRTLERKIERIAVRrqevlryfdwyQETWLQRRPRLATQLSNIERA 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 286 CERLKLELSEAQQSALRQSdAAVEEETilpHSSSVAEVlRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEK 365
Cdd:pfam12128 823 ISELQQQLARLIADTKLRR-AKLEMER---KASEKQQV-RLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLED 897
|
250
....*....|...
gi 755542115 366 EKSLLSQEKEELQ 378
Cdd:pfam12128 898 LKLKRDYLSESVK 910
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1444-1693 |
2.71e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.73 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1444 EQLLKEKEQGK-------AGELNQLLNAVKS-MQEKTVTFQQERDQV------MLALKQKQMETSTLQNEVqrlrdkESR 1509
Cdd:PRK10929 86 QQLNNERDEPRsvppnmsTDALEQEILQVSSqLLEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQLNEI------ERR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1510 LNQelqrlrdhLLESEDSHTREALAAEDREAKLRK-KVSVLEEKLVSSSNAMENA----------SHQASVQVESLQEQL 1578
Cdd:PRK10929 160 LQT--------LGTPNTPLAQAQLTALQAESAALKaLVDELELAQLSANNRQELArlrselakkrSQQLDAYLQALRNQL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1579 NMVSKQRDETALqlsvsqEQVKQYALSLANL-QMVLEHFQQEEkaMYSAELEKQNH---LLAEWKKKAESLEGKVLSLQE 1654
Cdd:PRK10929 232 NSQRQREAERAL------ESTELLAEQSGDLpKSIVAQFKINR--ELSQALNQQAQrmdLIASQQRQAASQTLQVRQALN 303
|
250 260 270
....*....|....*....|....*....|....*....
gi 755542115 1655 RLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEM 1693
Cdd:PRK10929 304 TLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEM 342
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
163-833 |
3.17e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 163 QDLDDHQHELSALQNAHQQKL---TEISRRHREELSDYEERIEELENLLQQGgsgvtvtdHSKVYEMQNTIQILQMEKVE 239
Cdd:pfam01576 29 KELEKKHQQLCEEKNALQEQLqaeTELCAEAEEMRARLAARKQELEEILHEL--------ESRLEEEEERSQQLQNEKKK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 240 STKQIEDLENKIKEihkrlssaehdqevWKKEQERLEVEKREMTEQCERLK--LELSEAQQSALrQSDAAVEEETILPHS 317
Cdd:pfam01576 101 MQQHIQDLEEQLDE--------------EEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKL-SKERKLLEERISEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 318 SSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKlqmcvQTLEKEKSLLSQEKEELQISLSklsseyevikstatr 397
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGR-----QELEKAKRKLEGESTDLQEQIA--------------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 398 dlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKK---LKEELAG 474
Cdd:pfam01576 226 --ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdLGEELEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 475 EKQrthQLED--DKMNIIKELTVQKEK-LTHSEQALSD--------LQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENH 543
Cdd:pfam01576 304 LKT---ELEDtlDTTAAQQELRSKREQeVTELKKALEEetrsheaqLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQ 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 544 ELREHIRQNEEELSTVRSELTQSQTQGssrnvkddllKERETQVQNLKQNLSEVEQlnehleqvafdlrtENEELLEAYE 623
Cdd:pfam01576 381 ALESENAELQAELRTLQQAKQDSEHKR----------KKLEGQLQELQARLSESER--------------QRAELAEKLS 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 624 EVRNQLeESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSAL-QLEQERLIQLNQ 702
Cdd:pfam01576 437 KLQSEL-ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQeQLEEEEEAKRNV 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 703 EKDF-----EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETL 777
Cdd:pfam01576 516 ERQLstlqaQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 755542115 778 RQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQ 833
Cdd:pfam01576 596 VSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEA 651
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
709-1686 |
3.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 709 AELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQT--LRKNETLRQTIEEKDR 786
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE-----KAERYQALLKEKREYEGYelLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 787 SLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSL 866
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 867 QEQKKELDEFKYQHEQMSISHTRLFLEKD---EEIKNLQKTIEQIKAQLHEERQDSQTensdIFQETKVQSLSIEHGSEK 943
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAE----TRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 944 HDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDevgkltqiIQQKDLEIQALHARISSasysqdvvyLQQQ 1023
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE--------KEDKALEIKKQEWKLEQ---------LAAD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1024 LHAYAMEREKVMVILNEKTRENSQLKTEYhkviDIISAKEAALIKLQDENKKMSTRFESSGQDMFKeTIQNLSRIIREKD 1103
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQREL----AEAEAQARASEERVRGGRAVEEVLKASIQGVHG-TVAQLGSVGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1104 IEID-ALSQKCQTLltVLQTSGTGSEAggvnsnqfEELLQERdklkqqvkKMEEWKQQVMTTVQNMQHESAQLQEELHQL 1182
Cdd:TIGR02169 539 TAIEvAAGNRLNNV--VVEDDAVAKEA--------IELLKRR--------KAGRATFLPLNKMRDERRDLSILSEDGVIG 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1183 QAQVSVDSDNNSKLQVDY----TGLIQSYEQNETKLKNFgqelaqvqhsigQLCNTKDLLLGKLDIMSpqlssGSSLTSQ 1258
Cdd:TIGR02169 601 FAVDLVEFDPKYEPAFKYvfgdTLVVEDIEAARRLMGKY------------RMVTLEGELFEKSGAMT-----GGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1259 AAEPLRASQSSEPHESSQLLQqEVDDLRKSLQEKDATIRtlqennhRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVL 1338
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLE-GLKRELSSLQSELRRIE-------NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1339 QNLLKEKDLLIKAKSDQLhssnenlankvnenELLRQAVTNLKERILILEMDISKLKGENEKIVDASKG-----KETEYQ 1413
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEI--------------ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeIQAELS 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1414 ALQETNMKFSMMLREKEfechsmreKALAFEQLLKEKEQGKAGELNQLLNAVKSmqektvtfqqerdqvmlalkQKQMET 1493
Cdd:TIGR02169 802 KLEEEVSRIEARLREIE--------QKLNRLTLEKEYLEKEIQELQEQRIDLKE--------------------QIKSIE 853
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1494 STLQNEVQRLRDKESRLNQELQRLRDhlLESEDSHTREalaaeDREaKLRKKVSVLEEKLVSSSNAMENASHQASVQVES 1573
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRD--LESRLGDLKK-----ERD-ELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1574 LQEQLNMVSKQRDETALQLSVSQEQvkqyaLSLANLQMVLEHFQQEEKAmysaeLEKQNHLLAEWKKKAEslegkvlslq 1653
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEE-----LSLEDVQAELQRVEEEIRA-----LEPVNMLAIQEYEEVL---------- 985
|
970 980 990
....*....|....*....|....*....|...
gi 755542115 1654 ERLDEANAALDSASRLTEQLDLKEEQIEELKKQ 1686
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
16-405 |
3.96e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 16 EKHEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPAASASSSFSYGVSHRVSAFH 95
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 96 EDDMDfgdviSSQQEINRLSNEVSRLESELGHWRHIAQTKVQGAQSSDQteicKLQNIIKELKQNRSQdLDDHQHELSAL 175
Cdd:TIGR02168 746 EERIA-----QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREA-LDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 176 qNAHQQKLTEISRRHREELSDYEERIEELENllqqggsgvtvtdhskvyemqnTIQILQMEKVESTKQIEDLENKIKEIH 255
Cdd:TIGR02168 816 -NEEAANLRERLESLERRIAATERRLEDLEE----------------------QIEELSEDIESLAAEIEELEELIEELE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 256 K---------------------RLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQ-----SDAAVE 309
Cdd:TIGR02168 873 SeleallnerasleealallrsELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlsEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 310 EETILPHSSSV-AEVLRLQQALTDAENEIMRLRSLNQDiSLAEdnqklqmcVQTLEKEKSLLSQEKEELQISLSKLSSEY 388
Cdd:TIGR02168 953 LEEAEALENKIeDDEEEARRRLKRLENKIKELGPVNLA-AIEE--------YEELKERYDFLTAQKEDLTEAKETLEEAI 1023
|
410
....*....|....*...
gi 755542115 389 EVIKSTAT-RDLDLFSQV 405
Cdd:TIGR02168 1024 EEIDREAReRFKDTFDQV 1041
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1484-1663 |
4.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1484 LALKQKQMETstLQNEVQRLRDKESRLNQELQRLRDHL-----LESEDSHTREALAAEDREAKLRKKVsvleEKLVSSSN 1558
Cdd:COG4913 612 LAALEAELAE--LEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAEL----ERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1559 AMEnashQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEW 1638
Cdd:COG4913 686 DLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180
....*....|....*....|....*...
gi 755542115 1639 ---KKKAESLEGKVLSLQERLDEANAAL 1663
Cdd:COG4913 762 aveRELRENLEERIDALRARLNRAEEEL 789
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1140-1716 |
4.36e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1140 LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKnfgq 1219
Cdd:pfam01576 94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLA---- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1220 ELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAsQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTL 1299
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEG-ESTDLQEQIAELQAQIAELRAQLAKKEEELQAA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1300 QEnnhRLSDSVAASSEVERKeHEQADSEIKQLKEkqevlqnllkekdllikaksdqlhssnenlankvnENELLRQAVTN 1379
Cdd:pfam01576 249 LA---RLEEETAQKNNALKK-IRELEAQISELQE-----------------------------------DLESERAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1380 LKERILILEMDISKLKGENEKIVDASKgketeyqALQETNMKfsmmlREKEFEC--HSMREKALAFEQLLKEKEQGKAGE 1457
Cdd:pfam01576 290 AEKQRRDLGEELEALKTELEDTLDTTA-------AQQELRSK-----REQEVTElkKALEEETRSHEAQLQEMRQKHTQA 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1458 LNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAED 1537
Cdd:pfam01576 358 LEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE----RQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1538 REAKLRKKVsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHfQ 1617
Cdd:pfam01576 434 KLSKLQSEL----ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-E 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1618 QEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDA 1697
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEA---LTQQLEEKAAAYDKLEKTKNRLQQELDDL 585
|
570 580
....*....|....*....|....*
gi 755542115 1698 ------QKKLMSLVNSTEGKVDKVL 1716
Cdd:pfam01576 586 lvdldhQRQLVSNLEKKQKKFDQML 610
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
421-748 |
4.63e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 421 QSIHENEILMAELEELdkQNQEATKHviliKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ---- 496
Cdd:pfam17380 263 QTMTENEFLNQLLHIV--QHQKAVSE----RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaiy 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 497 --KEKLT-HSEQALSDLQLTKQKLED---KVEDLVDQLSKSEKNNfDIQKENHELREHIRQneeELSTVRSELTQSQTQg 570
Cdd:pfam17380 337 aeQERMAmERERELERIRQEERKRELeriRQEEIAMEISRMRELE-RLQMERQQKNERVRQ---ELEAARKVKILEEER- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 571 sSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWE 650
Cdd:pfam17380 412 -QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 651 ---KAPLETELCRAEKRVLEEERKYEQTVQELssacspdtsalqleQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKE 727
Cdd:pfam17380 491 eqrRKILEKELEERKQAMIEEERKRKLLEKEM--------------EERQKAIYEEERRREAEEERRKQQEMEERRRIQE 556
|
330 340
....*....|....*....|.
gi 755542115 728 TLSSSLEEQKQLTQLINEKEI 748
Cdd:pfam17380 557 QMRKATEERSRLEAMEREREM 577
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
331-808 |
5.01e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 331 TDAENEIMRLRSLNQDISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLD-LFSQVHDLK 409
Cdd:pfam05557 41 RQLDRESDRNQELQKRIRLLEKREAEA---EEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVIScLKNELSELR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 410 HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKhvilIKDQLSKQQSEGDSVIKKLKE-ELAGEKQRTHQLEDDKMN 488
Cdd:pfam05557 118 RQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ----LRQNLEKQQSSLAEAEQRIKElEFEIQSQEQDSEIVKNSK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 489 I----IKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKnnfdiqkenhelrehirqNEEELSTVRSELT 564
Cdd:pfam05557 194 SelarIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK------------------YREEAATLELEKE 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 565 QSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVafdlrteneelleayeevrnQLEESVAGNKQISLEKT 644
Cdd:pfam05557 256 KLEQE----------LQSWVKLAQDTGLNLRSPEDLSRRIEQL--------------------QQREIVLKEENSSLTSS 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 645 A-MLEWEKAPLETELCRAEKRVLEEERKYEQTvqelssacspdTSALQLEQERLIQLNQEKDFeiaeLKKSIEQMDTDhK 723
Cdd:pfam05557 306 ArQLEKARRELEQELAQYLKKIEDLNKKLKRH-----------KALVRRLQRRVLLLTKERDG----YRAILESYDKE-L 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 724 RTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKEL----DKCAQTLRKNETLRQTIEEKDRSLG-----SMKEE 794
Cdd:pfam05557 370 TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELggykQQAQTLERELQALRQQESLADPSYSkeevdSLRRK 449
|
490
....*....|....
gi 755542115 795 NNHLQEELERLREQ 808
Cdd:pfam05557 450 LETLELERQRLREQ 463
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
642-855 |
5.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 642 EKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcspdTSALQLEQERLIQLNQEKDF---EIAELKKSIEQM 718
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAAleaELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 719 DTDHKRTKETLSSSLEEQKQLTQL-----------INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRS 787
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755542115 788 LGSMKEENNHLQEELERLREQQSRVVPAPEprtlDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 855
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
693-854 |
5.62e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 693 EQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQTLR 772
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 773 KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMI 852
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
..
gi 755542115 853 ED 854
Cdd:COG4717 230 EQ 231
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
262-608 |
5.63e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 262 EHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAeneimRLR 341
Cdd:pfam07888 58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEA-----RIR 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 342 SLNQDIS---------------LAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVH 406
Cdd:pfam07888 133 ELEEDIKtltqrvleretelerMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQ 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 407 DLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK 486
Cdd:pfam07888 213 DTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADAS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 487 MNIikeltvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQ----NEEELSTVRSE 562
Cdd:pfam07888 293 LAL-------REGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGRekdcNRVQLSESRRE 365
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 755542115 563 LTQsqtQGSSRNVkddLLKEREtQVQNLKQNLSE-VEQLNEHLEQVA 608
Cdd:pfam07888 366 LQE---LKASLRV---AQKEKE-QLQAEKQELLEyIRQLEQRLETVA 405
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
159-599 |
5.98e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.66 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 159 QNRSQDLDDHQHELSALQnAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKV 238
Cdd:pfam07111 252 QHLQEDRADLQATVELLQ-VRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 239 ESTKQIEDlenKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSD--AAVEEETILPH 316
Cdd:pfam07111 331 DSVKQLRG---QVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQqtASAEEQLKFVV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 317 SSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAednqklqmcVQTLEKEKSLLSQekeelQISLSKLSSEYEVIKSTAT 396
Cdd:pfam07111 408 NAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYA---------VRKVHTIKGLMAR-----KVALAQLRQESCPPPPPAP 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 397 R-DLDLFSQVHDLKHNLEAKEQELNQSIHeneILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGE 475
Cdd:pfam07111 474 PvDADLSLELEQLREERNRLDAELQLSAH---LIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVA 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 476 KQRTHQLEDDKMNIIKELTVQKEklthseqalsdlqLTKQKLEDKVED----LVDQLSKSEKnnfdiqkenhELREHIRQ 551
Cdd:pfam07111 551 RQGQQESTEEAASLRQELTQQQE-------------IYGQALQEKVAEvetrLREQLSDTKR----------RLNEARRE 607
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 755542115 552 NEEELSTVRsELTQSQTQGSSRNVKDDLLKE--RETQVQNLKQNLSEVEQ 599
Cdd:pfam07111 608 QAKAVVSLR-QIQHRATQEKERNQELRRLQDeaRKEEGQRLARRVQELER 656
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
147-796 |
6.07e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 147 ICKLQNIIKELKQnrsqdLDDHQHELSALQNAHQQKLTEISRRhREELSDYEERIEELENllqqggsgvtvtdhskvyEM 226
Cdd:COG5022 771 IKKIQVIQHGFRL-----RRLVDYELKWRLFIKLQPLLSLLGS-RKEYRSYLACIIKLQK------------------TI 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 227 QNTIQILQMEKVESTKQIEDLENKIKEIHKRLS--SAEHDQEVWKKEQERLEVEKREMTEqcerLKLELSEAQQSALRQS 304
Cdd:COG5022 827 KREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLLKKETIYLQSAQRVELAERQLQE----LKIDVKSISSLKLVNL 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 305 DaavEEETILPHSSSVAEVLRLQQALTdaENEIMRLRSLNQDISLAEDnqkLQMCVQTLEKEKSLLSQEKeelqiSLSKL 384
Cdd:COG5022 903 E---LESEIIELKKSLSSDLIENLEFK--TELIARLKKLLNNIDLEEG---PSIEYVKLPELNKLHEVES-----KLKET 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 385 SSEYE--VIKSTATRdldlfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKdqLSKQQSEGD 462
Cdd:COG5022 970 SEEYEdlLKKSTILV-----REGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASK--IISSESTEL 1042
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 463 SVIKKLKE--ELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA---------LSDLQLTKQ---KLEDKVEDLVDQL 528
Cdd:COG5022 1043 SILKPLQKlkGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEStenllktinVKDLEVTNRnlvKPANVLQFIVAQM 1122
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 529 SKSekNNFDIQKENHELREH--------IRQNEEELSTVRSELTQSQTqgSSRNVKDDLLKERETQV----QNLKQNLSE 596
Cdd:COG5022 1123 IKL--NLLQEISKFLSQLVNtlepvfqkLSVLQLELDGLFWEANLEAL--PSPPPFAALSEKRLYQSalydEKSKLSSSE 1198
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 597 VEQLNEHLEQVAFDLRTENE---ELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwEKAPLETELCRA-------EKRVL 666
Cdd:COG5022 1199 VNDLKNELIALFSKIFSGWPrgdKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTP-ASMSNEKLLSLLnsidnllSSYKL 1277
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 667 EEE---RKYEQTVQE----LSSACSPDTSALQLEQERLIQLNQE------KDFEIAELKKSIEQmDTDHKRTKETLSSSL 733
Cdd:COG5022 1278 EEEvlpATINSLLQYinvgLFNALRTKASSLRWKSATEVNYNSEelddwcREFEISDVDEELEE-LIQAVKVLQLLKDDL 1356
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 734 EEQKQLTQLINE-KEICIVKLK------EKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENN 796
Cdd:COG5022 1357 NKLDELLDACYSlNPAEIQNLKsrydpaDKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFS 1426
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1279-1684 |
7.38e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1279 QQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHS 1358
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1359 SNENL--ANKVNENELLRQAVTNLKERILILEMDISKLKgENEKIVDASKGKETEYQALQETN-MKFSMMLREKEFECHS 1435
Cdd:PTZ00121 1523 KADEAkkAEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLY 1601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1436 MREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ 1515
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1516 RlrdhllesEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLqEQLNMVSKQRDETALQLSVS 1595
Cdd:PTZ00121 1682 K--------AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA-EEAKKEAEEDKKKAEEAKKD 1752
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1596 QEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNH-LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-----SRL 1669
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEkRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSkemedSAI 1832
|
410
....*....|....*
gi 755542115 1670 TEQLDLKEEQIEELK 1684
Cdd:PTZ00121 1833 KEVADSKNMQLEEAD 1847
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
576-1421 |
7.76e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 576 KDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEaYEEVRNQLEES----VAGNKQISLEKTAMLEWEK 651
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYegyeLLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 652 APLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLIQLnqekdfEIAELKKSIEQMDTDHKRTKETLSS 731
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 732 SLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKN----ETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 807
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELkeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 808 QQSRVVpAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISH 887
Cdd:TIGR02169 400 EINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 888 TRLflekDEEIKNLQKTIEQIKAQlheeRQDSQTENSDIFQETKVQSLSIE--HGS--------EKHDLS--KAETERLV 955
Cdd:TIGR02169 479 DRV----EKELSKLQRELAEAEAQ----ARASEERVRGGRAVEEVLKASIQgvHGTvaqlgsvgERYATAieVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 956 KGIKERELE----IKLLNEKNTS------LTKQIDQLSKDEVGKLTQIIQQKdLEIQALHARISSASYS--QDVVYLQQQ 1023
Cdd:TIGR02169 551 NVVVEDDAVakeaIELLKRRKAGratflpLNKMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPAFKYvfGDTLVVEDI 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1024 LHAYAMEREKVMVILNEKTRENSQLKTEYHKvidiiSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLsriIREKD 1103
Cdd:TIGR02169 630 EAARRLMGKYRMVTLEGELFEKSGAMTGGSR-----APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE---LRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1104 IEIDALSQKCQTLltvlqtsgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQ 1183
Cdd:TIGR02169 702 NRLDELSQELSDA----------SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1184 AQVSvdsdnnsKLQVDYTGLIQSYeqNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPL 1263
Cdd:TIGR02169 772 EDLH-------KLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1264 RASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEvERKEHEQADSEIKQLKEKQEVLQNLLK 1343
Cdd:TIGR02169 843 IDLKEQI-----KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1344 EKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNL---KERILILEMDISKLKGENEKIVDASKGKETEYQALQETNM 1420
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLedvQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
|
.
gi 755542115 1421 K 1421
Cdd:TIGR02169 997 K 997
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
577-914 |
7.92e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.99 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 577 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLEEsvagnKQISLEKTA-MLEWEKAPLE 655
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEE-------KNREEVEELKDKYRELRKTLLA-----NRFSYGPAIdELEKQLAEIE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 656 TELCRAEKrvLEEERKYEQTVQELSSAcSPDTSALQLEQER----LIQLNQEKDFEIAELKKSIEQM-----DTDHKRTK 726
Cdd:pfam06160 160 EEFSQFEE--LTESGDYLEAREVLEKL-EEETDALEELMEDipplYEELKTELPDQLEELKEGYREMeeegyALEHLNVD 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 727 ETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSM----KEENNHLQEEL 802
Cdd:pfam06160 237 KEIQQLEEQLEENLALLENLEL--DEAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYlehaEEQNKELKEEL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 803 ERLreQQSRVVPAPEprtLDSTTELESELSQlhrikghLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQ 882
Cdd:pfam06160 315 ERV--QQSYTLNENE---LERVRGLEKQLEE-------LEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEE 382
|
330 340 350
....*....|....*....|....*....|..
gi 755542115 883 MSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 914
Cdd:pfam06160 383 FKESLQS--LRKDE--LEAREKLDEFKLELRE 410
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
427-918 |
9.29e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 427 EILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDdKMNIIKELTVQKEKLTHSEQA 506
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE-LEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 507 LSDLQlTKQKLEDKVEDLVDQLSKSEKNnfdiQKENHELREHIRQNEEELSTVRSELTQSQTQGSsrnvkddllKERETQ 586
Cdd:COG4717 128 LPLYQ-ELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLS---------LATEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 587 VQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLE---WEKAPLETELCRAEK 663
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaalLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 664 RVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLI 743
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 744 NEKEicivklkekssELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDS 823
Cdd:COG4717 354 REAE-----------ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 824 TTELESEL-SQLHRIKGHLEEEIKHHQKMIEDQnqSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLfLEKDEEIKNLQ 902
Cdd:COG4717 423 EALDEEELeEELEELEEELEELEEELEELREEL--AELEAELEQLEEDGELAELLQELEELKAELREL-AEEWAALKLAL 499
|
490
....*....|....*.
gi 755542115 903 KTIEQIKAQLHEERQD 918
Cdd:COG4717 500 ELLEEAREEYREERLP 515
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
891-1216 |
9.38e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 891 FLEKDEEIKNLQKTIEQIKAQLHE--ERQDSQTENSDIFQETKVQSLSIEH---GSEKHDLSKAETERLVKGIKERELEI 965
Cdd:PLN02939 65 LQSNTDENGQLENTSLRTVMELPQksTSSDDDHNRASMQRDEAIAAIDNEQqtnSKDGEQLSDFQLEDLVGMIQNAEKNI 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 966 KLLNEKNTSLTKQIDQLSKDEvGKLTQIIQQKDLEIQALHARISSASYSQ-DVVYLQQQL----HAYAMEREKVMVILNE 1040
Cdd:PLN02939 145 LLLNQARLQALEDLEKILTEK-EALQGKINILEMRLSETDARIKLAAQEKiHVEILEEQLeklrNELLIRGATEGLCVHS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1041 KTRENSQLKTEYHKVIDIISAKEAALIKLQDENK------KMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQ 1114
Cdd:PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEErvfkleKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 1115 TLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQvMTTVQNMQHESAQLQEELhqlqaQVSvDSDNNS 1194
Cdd:PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS-SYKVELLQQKLKLLEERL-----QAS-DHEIHS 376
|
330 340
....*....|....*....|..
gi 755542115 1195 KLQVdYTGLIQSYEQNETKLKN 1216
Cdd:PLN02939 377 YIQL-YQESIKEFQDTLSKLKE 397
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-923 |
9.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 679 LSSACSPDTSALQLEQERLIQLNQE---KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKE 755
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEiaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 756 KSSELQKELDK----------CAQTLRKNETLR-----QTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVpapeprt 820
Cdd:COG4942 91 EIAELRAELEAqkeelaellrALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542115 821 lDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtrlflekdEEIKN 900
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ------------------QEAEE 224
|
250 260
....*....|....*....|...
gi 755542115 901 LQKTIEQIKAQLHEERQDSQTEN 923
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAG 247
|
|
| |
