NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|684399140|ref|XP_009172407|]
View 

hypothetical protein T265_14547, partial [Opisthorchis viverrini]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PDEase_I_N super family cl07209
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 285-336 4.09e-20

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


The actual alignment was detected with superfamily member pfam08499:

Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 82.39  E-value: 4.09e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 684399140  285 DLSEAATEFVPDEVRDWLASTFTRTQALSG-IGNQKPRFRSVANAIRAGIFVE 336
Cdd:pfam08499   8 ELSEIQSDAVPSEVRDWLASTFTRQMAAHKrRSEEKPKFRSVAHAVQAGIFVE 60
 
Name Accession Description Interval E-value
PDEase_I_N pfam08499
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 285-336 4.09e-20

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 82.39  E-value: 4.09e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 684399140  285 DLSEAATEFVPDEVRDWLASTFTRTQALSG-IGNQKPRFRSVANAIRAGIFVE 336
Cdd:pfam08499   8 ELSEIQSDAVPSEVRDWLASTFTRQMAAHKrRSEEKPKFRSVAHAVQAGIFVE 60
 
Name Accession Description Interval E-value
PDEase_I_N pfam08499
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 285-336 4.09e-20

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 82.39  E-value: 4.09e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 684399140  285 DLSEAATEFVPDEVRDWLASTFTRTQALSG-IGNQKPRFRSVANAIRAGIFVE 336
Cdd:pfam08499   8 ELSEIQSDAVPSEVRDWLASTFTRQMAAHKrRSEEKPKFRSVAHAVQAGIFVE 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH