|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-795 |
4.11e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 27 LEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAERELGRVKNETQLLEK 106
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 107 EMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKL--TME 184
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLnnEIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 185 YNEKRK-LLDSELTETLSAQLELDKAAQ--DFRKIHLERQELIQQWENTIEQ---MQRRDQEIDNCALALSRIKQEAREK 258
Cdd:TIGR02168 404 RLEARLeRLEDRRERLQQEIEELLKKLEeaELKELQAELEELEEELEELQEElerLEEALEELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 259 EGVVKEKIKFLENEVENNieyeRKISVAERKVSKcrmdyqrhegNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKD 338
Cdd:TIGR02168 484 LAQLQARLDSLERLQENL----EGFSEGVKALLK----------NQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 339 IFDETLRLQKLkhhneVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDvLFKKVQELQNEIAKEKA 418
Cdd:TIGR02168 550 VVVENLNAAKK-----AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD-LVKFDPKLRKALSYLLG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 419 LVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRL--KGEI--NSEEKQALEAKILELKKTMDEK 494
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerRREIeeLEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 495 KSTLSLLESQIKKLHDMMIEdnlLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVhkamltsqircVEQQ 574
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE-----------LEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 575 RKTMSSEFHERLSKIDKLKNRYEiltvvmlppEGEEEKTQSYYVIKAAQ-EKEELQREGDSLDAKINKAEKEIYALQNTL 653
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIE---------QLKEELKALREALDELRaELTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 654 QVLNSCNSNYKQSFKKVTPSSDEYALKI-QLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEK 732
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIeELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568920979 733 QTLAFQLRKETEEQKPKLQRITKQC-GRLRREIRILKQTDNETLEEQDIQLREIIQFHKDIDQM 795
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-769 |
5.80e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 5.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 21 NQENKILEDQLAKLREEKSNLQDQLHDYEERINSMTShlknvnqeflftqslykARESEIESEEHfkaiaerelgrVKNE 100
Cdd:pfam15921 95 NESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMAD-----------------IRRRESQSQED-----------LRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 101 TQLLEKEMAIIRERKSQMENNifkTTQKLDDLKCQMNWDQQAL-EAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLE 179
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLED---SNTQIEQLRKMMLSHEGVLqEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 180 KLTMEYNEKRKLLDSELTeTLSAQLELDKAAQDfRKIHLerqeLIQQWENTIEQMQrRDQEIDncALALSRIKQEAREKE 259
Cdd:pfam15921 224 KILRELDTEISYLKGRIF-PVEDQLEALKSESQ-NKIEL----LLQQHQDRIEQLI-SEHEVE--ITGLTEKASSARSQA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 260 GVVKEKIKFLENEVEN-NIEYERKISVAERKVSKCRMDYQrhEGNRSqLKDELDTLKTTLNRTSSDLQALRKNISKVKKD 338
Cdd:pfam15921 295 NSIQSQLEIIQEQARNqNSMYMRQLSDLESTVSQLRSELR--EAKRM-YEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 339 IFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKA 418
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 419 LVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEK--QALEAKILELKKTMDEKKS 496
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQ 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 497 TLSLLESQIKKLHDMMIEDNLLKLQV---KRARELLYSKAEEVLSL-----------EKRKQQLGKDMEERAEEIKVHKA 562
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQTECEALKLQMaekDKVIEILRQQIENMTQLvgqhgrtagamQVEKAQLEKEINDRRLELQEFKI 611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 563 M----------LTSQIRCVEQQRKTMSSEFHERLSKIDKLKN-RYEILTVVMLPPEGEEEKTQSYYVIKA--AQEKEELQ 629
Cdd:pfam15921 612 LkdkkdakireLEARVSDLELEKVKLVNAGSERLRAVKDIKQeRDQLLNEVKTSRNELNSLSEDYEVLKRnfRNKSEEME 691
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 630 REGDSLDAKINKAEKEIYALQNTLqvlnscnsnykqsfkKVTPSSDEYALKIQLEEQKRTAderyrCKQRQIRELQEDIQ 709
Cdd:pfam15921 692 TTTNKLKMQLKSAQSELEQTRNTL---------------KSMEGSDGHAMKVAMGMQKQIT-----AKRGQIDALQSKIQ 751
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 710 SMENTFEVighlANNAKEKLTEKQTlafQLRKETEEQKPKLQRITKQCGRLRREIRILKQ 769
Cdd:pfam15921 752 FLEEAMTN----ANKEKHFLKEEKN---KLSQELSTVATEKNKMAGELEVLRSQERRLKE 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-769 |
6.61e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 6.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 26 ILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIEseehfkaIAERELGRVKNETQLLE 105
Cdd:TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE-------ELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 106 KEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEY 185
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 186 NEKRKLLDSELTETLSAQLELDKAAQdfRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEK 265
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEA--RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 266 IKFLENEVENNIEYERKISVAERKVSK-------CRMDYQRHEG----------NRSQLKDELDTLKTTLNRTSSDLQAL 328
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQlqarldsLERLQENLEGfsegvkallkNQSGLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 329 RKNISKVKKDIFDETLRLQKLkhhneVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDvLFKKVQE 408
Cdd:TIGR02168 540 EAALGGRLQAVVVENLNAAKK-----AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD-LVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 409 LQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRL--KGEI--NSEEKQALEAKI 484
Cdd:TIGR02168 614 LRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerRREIeeLEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 485 LELKKTMDEKKSTLSLLESQIKKL----HDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEI--- 557
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLeea 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 558 KVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYyVIKAAQEKEELQREGDSLDA 637
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR-IAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 638 KINKAEKEIYALQNTLQVLNS-CNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFE 716
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESeLEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 568920979 717 VIGHLANNAKEKLTEKQTLAFqlrketEEQKPKLQRITKQCGRLRREIRILKQ 769
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
16-645 |
3.67e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 16 AIPVANQENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAERELG 95
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 96 RVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQM---NWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIR 172
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 173 ALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIdncALAL---- 248
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY---ATAIevaa 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 249 -SRIKQEAREKEGVVKEKIKFLE------------NEVE-------------------NNIEYERKISVAERKVSKCRMD 296
Cdd:TIGR02169 546 gNRLNNVVVEDDAVAKEAIELLKrrkagratflplNKMRderrdlsilsedgvigfavDLVEFDPKYEPAFKYVFGDTLV 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 297 YQRHEGNRSQL-KDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKAT 375
Cdd:TIGR02169 626 VEDIEAARRLMgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 376 NMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNK-------QLHKLDfETLKQQ 448
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEArieeleeDLHKLE-EALNDL 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 449 EIMYSQDFyIQQVERRMSRLKgeinsEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMIEDNLLKLQVKRAREL 528
Cdd:TIGR02169 785 EARLSHSR-IPEIQAELSKLE-----EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 529 LYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEIL-----TVVM 603
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALeeelsEIED 938
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568920979 604 LPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAEKE 645
Cdd:TIGR02169 939 PKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
91-687 |
2.68e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 91 ERELGRVKNETQ-----LLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESahKDSDSLTLQKYSQ 165
Cdd:pfam15921 244 EDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQA--RNQNSMYMRQLSD 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 166 qddnkiraLTLQLEKLTMEYNEKRKLLDSELTEtLSAQLELdkAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNca 245
Cdd:pfam15921 322 --------LESTVSQLRSELREAKRMYEDKIEE-LEKQLVL--ANSELTEARTERDQFSQESGNLDDQLQKLLADLHK-- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 246 lalsRIKQEAREKEgvvkEKIKFLENEVENNIeyerKISVAERKVSKCRMDYQRHEGNRSQLKDELdtlKTTLNRTSSDL 325
Cdd:pfam15921 389 ----REKELSLEKE----QNKRLWDRDTGNSI----TIDHLRRELDDRNMEVQRLEALLKAMKSEC---QGQMERQMAAI 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 326 QALRKNISKVkkdifdETLRLQkLKHHNEVVKHKLKMITEKTLSIEEKATNMEDM---LKEEEKGLKEVEVQLGIVK--- 399
Cdd:pfam15921 454 QGKNESLEKV------SSLTAQ-LESTKEMLRKVVEELTAKKMTLESSERTVSDLtasLQEKERAIEATNAEITKLRsrv 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 400 DVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKL--DFETLKQQEIMYSQDFYIQQVERrmSRLKGEINSEEK 477
Cdd:pfam15921 527 DLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILrqQIENMTQLVGQHGRTAGAMQVEK--AQLEKEINDRRL 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 478 QALEAKILELKK--TMDEKKSTLSLLE-----------SQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQ 544
Cdd:pfam15921 605 ELQEFKILKDKKdaKIRELEARVSDLElekvklvnagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFR 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 545 QLGKDMEERAEEIKVHKAMLTSQIrcvEQQRKTMSS-----------------EFHERLSKIDKLKNRYEILTVVMLPPE 607
Cdd:pfam15921 685 NKSEEMETTTNKLKMQLKSAQSEL---EQTRNTLKSmegsdghamkvamgmqkQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 608 GEEEKTQsyyvikaaQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQK 687
Cdd:pfam15921 762 KEKHFLK--------EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
29-558 |
3.28e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 29 DQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQS-LYKARESEIESEEHFKAIAERELgrvknETQLLEKE 107
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREeLEKLEKEVKELEELKEEIEELEK-----ELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 108 MAIIRERKSQMENNIFKTTQKLDDLKCQmnwdqqalEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNE 187
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 188 KRKLLD------SELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRD----QEIDNCALALSRIKQEARE 257
Cdd:PRK03918 326 IEERIKeleekeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgltpEKLEKELEELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 258 KEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNR--SQLKDELDTLKTTLNRTSSDLQALRKNISKV 335
Cdd:PRK03918 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 336 KKDIFDET--LRLQKLKHHNEVVKHKLKMITEKTLsiEEKATNMEDMLKEeekgLKEVEVQLGIVKDVLfKKVQELQNEI 413
Cdd:PRK03918 486 EKVLKKESelIKLKELAEQLKELEEKLKKYNLEEL--EKKAEEYEKLKEK----LIKLKGEIKSLKKEL-EKLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 414 AkekALVSEIEGTRSSLKHLNKQLHKLDFETLKQ--QEIMYSQDFYIQQVERRMSRLKGEINSEEKQALEAKILELKKTM 491
Cdd:PRK03918 559 A---ELEKKLDELEEELAELLKELEELGFESVEEleERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568920979 492 DEKKSTLSLLESQIKKLHDMMIEDNLLKLQVK--RARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIK 558
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYEELREEylELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
14-258 |
8.54e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 8.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 14 GFAIPVANQENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIeseehfkAIAERE 93
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-------AALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 94 LGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQklddlkcqmnwdQQALEAWL--EESAHKDSDSLTLQKYSQQDDNKI 171
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR------------QPPLALLLspEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 172 RALTLQLEKLT---MEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALAL 248
Cdd:COG4942 153 EELRADLAELAalrAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
250
....*....|
gi 568920979 249 SRIKQEAREK 258
Cdd:COG4942 233 EAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-794 |
2.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 244 CALALSRIKQEAREKE-GVVKEKIKFLENEVENN----IEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTL 318
Cdd:TIGR02168 211 KAERYKELKAELRELElALLVLRLEELREELEELqeelKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 319 NRTSSDLQALRKNI-------SKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEV 391
Cdd:TIGR02168 291 YALANEISRLEQQKqilrerlANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 392 EvqlgivkdvlfKKVQELQNEIAKEKALVSEIEGTRSSLKhlnkqlhkldfetlKQQEIMYSQdfyIQQVERRMSRLKGE 471
Cdd:TIGR02168 371 E-----------SRLEELEEQLETLRSKVAQLELQIASLN--------------NEIERLEAR---LERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 472 INSEEKQALEAKILELKKTMDEKKStlsLLESQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLgKDME 551
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAELEELEE---ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 552 ERAEEikvhkamLTSQIRCVEQQRKTMSSeFHERLSKIDKLKNRYEILTVVMLPPEGEE---EKTQSYYVIKAAQEKEEL 628
Cdd:TIGR02168 499 ENLEG-------FSEGVKALLKNQSGLSG-ILGVLSELISVDEGYEAAIEAALGGRLQAvvvENLNAAKKAIAFLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 629 QR-----EGDSLDAKINKAEKEIYALQN-TLQVLNSCNSNYKQSFKKVTPSSDEYA----LKIQLEEQKRTaDERYR--- 695
Cdd:TIGR02168 571 GRvtflpLDSIKGTEIQGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLvvddLDNALELAKKL-RPGYRivt 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 696 ------------------------CKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQ 751
Cdd:TIGR02168 650 ldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568920979 752 RITKQCGRLRREIRILKQTDNETLEEQDIQLREIIQFHKDIDQ 794
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
27-600 |
9.30e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 9.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 27 LEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAERELGRVKNETQLLEK 106
Cdd:TIGR04523 73 SNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 107 EMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQqddnKIRALTLQLEKLTMEYN 186
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 187 EKRKLLDSEltetlsaQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREkegvVKEKI 266
Cdd:TIGR04523 229 QLKDNIEKK-------QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ----LKSEI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 267 KFLENEVENNIEYERK--ISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETL 344
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKseLKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 345 RLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIE 424
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 425 GTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEIN--SEEKQALEAKILELKKTMDEKKSTLSLLE 502
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKelEEKVKDLTKKISSLKEKIEKLESEKKEKE 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 503 SQIKKLHDMMIEDN------LLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHK---AMLTSQIRCVEQ 573
Cdd:TIGR04523 538 SKISDLEDELNKDDfelkkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIkeiEEKEKKISSLEK 617
|
570 580
....*....|....*....|....*..
gi 568920979 574 QRKTMSSEFHERLSKIDKLKNRYEILT 600
Cdd:TIGR04523 618 ELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
22-314 |
1.42e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 22 QENKILEDQLAKLREEKSNLQDQLHDYEERINSMtshlknvNQEFLFTQSLYKARESEIESEEHFKAIAERELGRvknet 101
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEEL-------SRQISALRKDLARLEAEVEQLEERIAQLSKELTE----- 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 102 qlLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKL 181
Cdd:TIGR02168 759 --LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 182 TMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRD----------QEIDNCALALSRI 251
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRseleelseelRELESKRSELRRE 916
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568920979 252 KQEAREKEGVVKEKIKFLENEVENNIE-----YERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTL 314
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQErlseeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-479 |
2.00e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 168 DNKIRALTLQLEKLTMEYN--EKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQelIQQWENTIEQMQRRDQEI-DNC 244
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREkaERYQALLKEKREYEGYELLKEKEALERQKEAIERQ--LASLEEELEKLTEEISELeKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 245 ALALSRIKQEAREKEGVVKEKIKFLENEVEnniEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSD 324
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 325 LQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKAtnmeDMLKEEEKGLKEVEVQLGIVKDVLFK 404
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL----EKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 405 KVQELQNEIAKEKALVSEIEGTRSSL-KHLNKQLHKLdfETLKQQEIMYSQDFY-----IQQVERRMSRLKGEINSEEKQ 478
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKaLEIKKQEWKL--EQLAADLSKYEQELYdlkeeYDRVEKELSKLQRELAEAEAQ 498
|
.
gi 568920979 479 A 479
Cdd:TIGR02169 499 A 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-433 |
3.54e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 170 KIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALS 249
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 250 RIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALR 329
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 330 KNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQEL 409
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260
....*....|....*....|....
gi 568920979 410 QNEIAKEKALVSEIEGTRSSLKHL 433
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-804 |
3.67e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 176 LQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQEL---IQQWENTIEQMQRRDQEIDNCALALSRIK 252
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELrleVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 253 QEAREKEGVVKEKIKFLENEVENNieyERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKNI 332
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEEL---ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 333 SKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEktlSIEEKATNMEDMLKE-EEKGLKEVEVQLGIVKDVLFKKVQELQN 411
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLED---RRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 412 EIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFY---IQQVERRMSRLKGE-------INSEEK--QA 479
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLSGIlgvlselISVDEGyeAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 480 LEAKILEL--KKTMDEKKSTLSLLESQIKKLHDMMiedNLLKLQVKRARELLYSKAEeVLSLEKRKQQLGKDMEERAEEI 557
Cdd:TIGR02168 539 IEAALGGRlqAVVVENLNAAKKAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDRE-ILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 558 KVHKAMLTSQIRCVEqqrktmssEFHERLSKIDKLKNRYEILTV--VMLPPEG-----EEEKTQSyyVIKAAQEKEELQR 630
Cdd:TIGR02168 615 RKALSYLLGGVLVVD--------DLDNALELAKKLRPGYRIVTLdgDLVRPGGvitggSAKTNSS--ILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 631 EGDSLDAKINKAEKEIYALQNTLQvlnscnsnykqsfkkvtpssdeyalkiQLEEQKRTADERYRCKQRQIRELQEDIQS 710
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELE---------------------------ELEEELEQLRKELEELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 711 MENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCGRLRREIRILKQtDNETLEEQDIQLREIIQFHK 790
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE-ELKALREALDELRAELTLLN 816
|
650
....*....|....
gi 568920979 791 DIDQMLVNAMENAE 804
Cdd:TIGR02168 817 EEAANLRERLESLE 830
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
95-514 |
3.77e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 95 GRVKNETQLLE--KEMAIIRERKSQMENNIFKTTQKLDDLKcqmnwdqqaleawleesahkdsdsltlqkysqqddNKIR 172
Cdd:TIGR02168 664 GSAKTNSSILErrREIEELEEKIEELEEKIAELEKALAELR-----------------------------------KELE 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 173 ALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIdncalalsrik 252
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL----------- 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 253 QEAREKEGVVKEKIKFLENEVENNieyERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKNI 332
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 333 SKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLgivkdvlfkkvQELQNE 412
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL-----------EELREK 923
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 413 IAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEImySQDFYIQQVERRMSRLKGEINS---------EEKQALEAK 483
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--KIEDDEEEARRRLKRLENKIKElgpvnlaaiEEYEELKER 1001
|
410 420 430
....*....|....*....|....*....|.
gi 568920979 484 ILELKKTMDEKKSTLSLLESQIKKLHDMMIE 514
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
140-784 |
7.44e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 7.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 140 QQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKlTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLE 219
Cdd:PTZ00121 1122 KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED-ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 220 RQELIQQWENTIEQMQRRDQEIDNCALALSRIkQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVS-KCRMDYQ 298
Cdd:PTZ00121 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKA-EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARK 1279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 299 RHEGNRSQLKDELDTLKTTLNRtssdlqalrKNISKVKKDIfDETLRLQKLKHHNEVVKHKLKMITEKTlsiEEKATNME 378
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEK---------KKADEAKKKA-EEAKKADEAKKKAEEAKKKADAAKKKA---EEAKKAAE 1346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 379 DMLKEEEKGLKEVEvqlgivKDVLFKKVQELQNEIAKEKAlvseiegtrSSLKHLNKQLHKLDFETLKQQEIMYSQDFYI 458
Cdd:PTZ00121 1347 AAKAEAEAAADEAE------AAEEKAEAAEKKKEEAKKKA---------DAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 459 QQVERRMSRLKGEINSEEKQALEakilELKKTMDEKKSTLsllESQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEVLS 538
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKAD---EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 539 LEKRKQQlGKDMEERAEEIK--VHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSY 616
Cdd:PTZ00121 1485 ADEAKKK-AEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 617 YVIKAAQEKEELQREGDSLDAKINKAEKEiyalqntlQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYRC 696
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEA--------RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 697 KQRQIRELQE--DIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCGRLRREIRILKQTDNET 774
Cdd:PTZ00121 1636 EQLKKKEAEEkkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
650
....*....|
gi 568920979 775 LEEQDIQLRE 784
Cdd:PTZ00121 1716 KKAEELKKAE 1725
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
257-773 |
7.04e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 7.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 257 EKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRmdyqrheGNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVK 336
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREEL-------EKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 337 KDIFDETLRLQKLKHHNEVVKHKLKMITEktlsIEEKATN---MEDMLKEEEKGLKEVEVQLGIVKdvlfKKVQELQNEI 413
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKE----LKEKAEEyikLSEFYEEYLDELREIEKRLSRLE----EEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 414 AKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMysqdfyiqQVERRMSRLKGEINSEEKQALEAKILELKKTMDE 493
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK--------AKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 494 KKSTLSLLESQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEvLSLEKRKQQLGKDMEErAEEIKVHKAMLTSQIRCVEQ 573
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE-LTEEHRKELLEEYTAE-LKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 574 QRKTMSSEFhERLSKIDKLKNRYEILtvvmlppEGEEEKTQSYYVIKAAQEKEELQRegdsLDAKINKAEKEIYALQNTL 653
Cdd:PRK03918 481 ELRELEKVL-KKESELIKLKELAEQL-------KELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKGEIKSLKKEL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 654 QVLNSCNSNYKQSFKKvtpssdeyaLKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQ 733
Cdd:PRK03918 549 EKLEELKKKLAELEKK---------LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEK 619
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568920979 734 TLAfQLRKETEEQKPKLQRITKQCGRLRREIRILKQTDNE 773
Cdd:PRK03918 620 ELK-KLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-292 |
7.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 30 QLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEflftqsLYKARESEIESEEHFKAIAERELgRVKNETQLLEKEMA 109
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE------LEELRLELEELELELEEAQAEEY-ELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 110 IIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKR 189
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 190 KLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFL 269
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260
....*....|....*....|...
gi 568920979 270 ENEVENNIEYERKISVAERKVSK 292
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAE 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-736 |
1.04e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 359 KLKMITEKTLS-IEEKATNM---EDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIA----KEKALVSEIEGTRSSL 430
Cdd:TIGR02168 169 KYKERRKETERkLERTRENLdrlEDILNELERQLKSLERQAEKAERYKELKAELRELELAllvlRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 431 KHLNKQLHKLDfETLKQQEIMYSQ-DFYIQQVERRMSRLKGEINS--EEKQALEAKILELKKTMDEKKSTLSLLESQIKK 507
Cdd:TIGR02168 249 KEAEEELEELT-AELQELEEKLEElRLEVSELEEEIEELQKELYAlaNEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 508 LHDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEikvhkamltsqircVEQQRKTMSSEFHERLS 587
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--------------LEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 588 KIDKLKNRYEILtvvmlppegEEEKTQSyyvikaAQEKEELQREGDSLDAKINKAEKEiyALQNTLQVLNscnsnyKQSF 667
Cdd:TIGR02168 394 QIASLNNEIERL---------EARLERL------EDRRERLQQEIEELLKKLEEAELK--ELQAELEELE------EELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568920979 668 KKVTPSSDEYALKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLA 736
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-695 |
1.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 380 MLKEEEKGLKevevqlgIVKDVLFKKVQELQNEIAKEKALVSEIEGtrsSLKHLNKQLHKLDFETLKQQEImysqdfyIQ 459
Cdd:TIGR02169 678 RLRERLEGLK-------RELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKER-------LE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 460 QVERRMSRLkgeinSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKlhdmmIEDNLLKLQVKRARELLYSKAEEVLSL 539
Cdd:TIGR02169 741 ELEEDLSSL-----EQEIENVKSELKELEARIEELEEDLHKLEEALND-----LEARLSHSRIPEIQAELSKLEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 540 EKRKQQLGKDMEERAEEIKV---HKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSy 616
Cdd:TIGR02169 811 EARLREIEQKLNRLTLEKEYlekEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK- 889
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568920979 617 YVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYR 695
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
278-639 |
1.94e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 278 EYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNrtssdlQALRKNISKVKKDIFDETLRLQKLKHHNEvvk 357
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE------KAERYQALLKEKREYEGYELLKEKEALER--- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 358 hKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKA-LVSEIEGTRSSLKHLNKQ 436
Cdd:TIGR02169 238 -QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGeLEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 437 LHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGeinseEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMIEDN 516
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 517 LLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTS-------QIRCVEQQRKTMSSEFHERLSKI 589
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekedkalEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568920979 590 DKLKNRYEILtvvmlppEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKI 639
Cdd:TIGR02169 472 YDLKEEYDRV-------EKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-343 |
2.30e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 22 QENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNvnQEFLFTQSLYKARESEIESEEHFKAIAERELGRVKNET 101
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 102 QLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKL 181
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 182 TMEYNEKRKLLdSELTETLSAQLELDKaaqdfrkihlerqeliqqwenTIEQMQRRDQEIDNCALALSRIKQEAREKEgv 261
Cdd:TIGR02169 909 EAQIEKKRKRL-SELKAKLEALEEELS---------------------EIEDPKGEDEEIPEEELSLEDVQAELQRVE-- 964
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 262 vkEKIKFLENEVENNIEyerkisvaerkvskcrmDYQRHEGNRSQLKDELDTLKttlnRTSSDLQALRKNISKVKKDIFD 341
Cdd:TIGR02169 965 --EEIRALEPVNMLAIQ-----------------EYEEVLKRLDELKEKRAKLE----EERKAILERIEEYEKKKREVFM 1021
|
..
gi 568920979 342 ET 343
Cdd:TIGR02169 1022 EA 1023
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
28-257 |
3.55e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 28 EDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIA----------------- 90
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAeleaelerldassddla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 91 --ERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMN--------WDQQALEAWLEE---SAHKDSDS 157
Cdd:COG4913 689 alEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEaaedlarlELRALLEERFAAalgDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 158 LTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSaqleldkAAQDFRKIH--LERQELI---QQWENtie 232
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLE-------SLPEYLALLdrLEEDGLPeyeERFKE--- 838
|
250 260
....*....|....*....|....*
gi 568920979 233 qmQRRDQEIDNCALALSRIKQEARE 257
Cdd:COG4913 839 --LLNENSIEFVADLLSKLRRAIRE 861
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
74-783 |
3.77e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 74 KARESEIESEEHFKAI--AERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNwdqqalEAWLEESA 151
Cdd:TIGR02169 217 LKEKREYEGYELLKEKeaLERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 152 HKDSDSLTLQKYSQQDDNKIRALTLQLEKLtmeyNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTI 231
Cdd:TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDA----EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 232 EQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVaerKVSKCRMDYQRHEGNRSQLKDEL 311
Cdd:TIGR02169 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE---ELADLNAAIAGIEAKINELEEEK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 312 DTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKmITEKTLSIEEKATN----MEDMLKEEEKG 387
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEERVRggraVEEVLKASIQG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 388 LKEVEVQLGIVKDVLFKKVQ-----ELQN------EIAKEK-ALVSEIEGTRSSLKHLNK--QLHKLDFETLKQQEIMYS 453
Cdd:TIGR02169 523 VHGTVAQLGSVGERYATAIEvaagnRLNNvvveddAVAKEAiELLKRRKAGRATFLPLNKmrDERRDLSILSEDGVIGFA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 454 QDF--YIQQVER-------------------------RMSRLKGEInSEEKQALEAKILELKKTMDEKKSTLSLLESQIK 506
Cdd:TIGR02169 603 VDLveFDPKYEPafkyvfgdtlvvedieaarrlmgkyRMVTLEGEL-FEKSGAMTGGSRAPRGGILFSRSEPAELQRLRE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 507 KLHDMMIEDNLLKLQVKRARELLYSK-------AEEVLSLEKRKQQLGKDME---ERAEEIKVHKAMLTSQIRCVEQQRK 576
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELsqelsdaSRKIGEIEKEIEQLEQEEEklkERLEELEEDLSSLEQEIENVKSELK 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 577 TMSSEFHERLSKIDKLKNRYEILTvVMLPPEGEEEKTQSYYVIK--------------------------AAQEKEELQR 630
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLE-ARLSHSRIPEIQAELSKLEeevsriearlreieqklnrltlekeyLEKEIQELQE 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 631 EGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKqsfKKVTPSSDEYalkIQLEEQKRTADERYRCKQRQIRELQEDIQS 710
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELE---AALRDLESRL---GDLKKERDELEAQLRELERKIEELEAQIEK 914
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568920979 711 MENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQkPKLQRITKQCGRLRREIRILKQTDNETLEEQDIQLR 783
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
143-712 |
3.90e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 143 LEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQE 222
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 223 LIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEG 302
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 303 NRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLK 382
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 383 EEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEimysqDFYIQQVE 462
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE-----AAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 463 RRMSRLKGEINSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHdmmiEDNLLKLQVKRARELLYSKAEEVLSLEKR 542
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL----AAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 543 --KQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEiltvvmlppEGEEEKTQSYYVIK 620
Cdd:COG1196 618 lgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL---------LEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 621 AAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYRCKQRQ 700
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|..
gi 568920979 701 IRELQEDIQSME 712
Cdd:COG1196 769 LERLEREIEALG 780
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
154-794 |
6.03e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 154 DSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQ 233
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 234 MQRRDQEIDNCALALSRIKQEAREKEgVVKEKIKFLENEVEN----NIEYERKISVAERKVSKCRMDYQRHEGNRSQLKD 309
Cdd:TIGR04523 182 KLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISElkkqNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 310 ELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKhhNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLK 389
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 390 EVEVQLGIVKDVL-------FKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVE 462
Cdd:TIGR04523 339 QLNEQISQLKKELtnsesenSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 463 RRMSRLKGEInseekQALEAKILELKKTMDEKKSTLSLLESQIKKLhdmmieDNLLKLQVKRARELLYSKAEEVLSLEKR 542
Cdd:TIGR04523 419 QEKELLEKEI-----ERLKETIIKNNSEIKDLTNQDSVKELIIKNL------DNTRESLETQLKVLSRSINKIKQNLEQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 543 KQQLgkdmEERAEEIKvhkaMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNryEILTVVMLPPEGEEEKTQSYYVIKaa 622
Cdd:TIGR04523 488 QKEL----KSKEKELK----KLNEEKKELEEKVKDLTKKISSLKEKIEKLES--EKKEKESKISDLEDELNKDDFELK-- 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 623 qeKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKI-QLEEQKRTADERYRCKQRQI 701
Cdd:TIGR04523 556 --KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIsSLEKELEKAKKENEKLSSII 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 702 RELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLrKETEEQKPKLQRITKQCGRLRREIRILKQTDNETLEEQDIQ 781
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKES-KTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEK 712
|
650
....*....|...
gi 568920979 782 LREIIQFHKDIDQ 794
Cdd:TIGR04523 713 YKEIEKELKKLDE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-712 |
6.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 388 LKEVEVQLGIVKDVLFKKVQELQN-EIAKEKALvseiegtrsSLKHLNKQLHKLDF-ETLKQQEIMYSQdfyIQQVERRM 465
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERlRREREKAE---------RYQALLKEKREYEGyELLKEKEALERQ---KEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 466 SRLKgeinsEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHD---MMIEDNLLKLQVK--RARELLYSKAEEVLSLE 540
Cdd:TIGR02169 247 ASLE-----EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqLRVKEKIGELEAEiaSLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 541 KRKQQLgkdmEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVvMLPPEGEEEKTQSYYVIK 620
Cdd:TIGR02169 322 ERLAKL----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK-EFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 621 AAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLnscnsnyKQSFKKVTPSSDEYALKI--------QLEEQKRTADE 692
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGI-------EAKINELEEEKEDKALEIkkqewkleQLAADLSKYEQ 469
|
330 340
....*....|....*....|
gi 568920979 693 RYRCKQRQIRELQEDIQSME 712
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQ 489
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
106-561 |
6.15e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 106 KEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQD----DNKIRALTLQLEKL 181
Cdd:pfam05483 257 KDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDlqiaTKTICQLTEEKEAQ 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 182 TMEYNEKR---KLLDSELTETL--------SAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSR 250
Cdd:pfam05483 337 MEELNKAKaahSFVVTEFEATTcsleellrTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 251 IKQEAREKEGVVK--EKIKFLENEVENNIEY-ERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQA 327
Cdd:pfam05483 417 DEKLLDEKKQFEKiaEELKGKEQELIFLLQArEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDK 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 328 LRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLK----EVEVQLGIVKDVLF 403
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIqkgdEVKCKLDKSEENAR 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 404 KKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEeKQALEAK 483
Cdd:pfam05483 577 SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASA-KQKFEEI 655
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568920979 484 ILELKKTMDEKKSTLSLLESQIKKLHdmMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHK 561
Cdd:pfam05483 656 IDNYQKEIEDKKISEEKLLEEVEKAK--AIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK 731
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-556 |
1.32e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 322 SSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEvqlgivkdv 401
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE--------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 402 lfKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSqdfYIQQVERRMSRLKGEINsEEKQALE 481
Cdd:COG4942 90 --KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ---YLKYLAPARREQAEELR-ADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568920979 482 AKILELKKTMDEKKSTLSLLESQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEE 556
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
22-528 |
1.38e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 22 QENKILEDQLAKLREEKSNLQDQLHDYE---ERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAERELGRVK 98
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 99 nETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNwdqqALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALtlql 178
Cdd:PRK03918 287 -ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN----GIEERIKELEEKEERLEELKKKLKELEKRLEEL---- 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 179 EKLTMEYNE-KRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQ---- 253
Cdd:PRK03918 358 EERHELYEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgk 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 254 --------EAREKEGVVKE---KIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRsQLKDELDTLKTTLN--- 319
Cdd:PRK03918 438 cpvcgrelTEEHRKELLEEytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK-ELAEQLKELEEKLKkyn 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 320 -----RTSSDLQALRKNISKVKKDIFDETLRLQKLKHhnevVKHKLKMITEKTLSIEEKATNMEDMLKEEE-KGLKEVEV 393
Cdd:PRK03918 517 leeleKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 394 QLGIVKDV------LFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFEtLKQQEIMYSQDFYiQQVERRMSR 467
Cdd:PRK03918 593 RLKELEPFyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE-LEELEKKYSEEEY-EELREEYLE 670
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568920979 468 LkgeinSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMIEDNLLKLQVKRAREL 528
Cdd:PRK03918 671 L-----SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL 726
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
548-786 |
1.57e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 548 KDMEERAEEIK--------VHKAMLTsqircVEQQRKTMS--SEFHERLSKIDKLKNRYEILtVVMLPPEGEEEKTQSyy 617
Cdd:COG4913 221 PDTFEAADALVehfddlerAHEALED-----AREQIELLEpiRELAERYAAARERLAELEYL-RAALRLWFAQRRLEL-- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 618 vikAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLnscnsnykqsfkKVTPSSDEYALKIQLEEQKRTADERYRCK 697
Cdd:COG4913 293 ---LEAELEELRAELARLEAELERLEARLDALREELDEL------------EAQIRGNGGDRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 698 QRQIRELQEDIQSME----NTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCGRLRREIRILKQTDNe 773
Cdd:COG4913 358 ERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS- 436
|
250
....*....|...
gi 568920979 774 TLEEQDIQLREII 786
Cdd:COG4913 437 NIPARLLALRDAL 449
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
317-556 |
2.02e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 317 TLNRTSSDLQALRKNISKVKKdifdetlRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEvqlg 396
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEK-------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 397 ivkdvlfKKVQELQNEIAKEKALVSEI------EGTRSSLKHLnkqLHKLDFETLKQQEIMYSQdfYIQQVERRMSRLKG 470
Cdd:COG4942 90 -------KEIAELRAELEAQKEELAELlralyrLGRQPPLALL---LSPEDFLDAVRRLQYLKY--LAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 471 EIN--SEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMIEdnlLKLQVKRARELLYSKAEEVLSLEKRKQQLGK 548
Cdd:COG4942 158 DLAelAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 568920979 549 DMEERAEE 556
Cdd:COG4942 235 EAAAAAER 242
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
22-535 |
2.19e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 22 QENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVnQEFLFTQSLYKARESEIESEEHFKAIAERELGRVKNET 101
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY-EDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGAT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 102 QLLE---------------------KEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTL 160
Cdd:TIGR00606 663 AVYSqfitqltdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 161 QKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLdseltETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQE 240
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLL-----GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG 817
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 241 ID--NCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLkttl 318
Cdd:TIGR00606 818 SDldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL---- 893
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 319 nrtSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTlsiEEKATNMEDMLKEEEKGLKEVEVQLGIV 398
Cdd:TIGR00606 894 ---STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA---QDKVNDIKEKVKNIHGYMKDIENKIQDG 967
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 399 KDvlfKKVQELQNEIAKEKALVSEIEGTRSSLKHlNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEKQ 478
Cdd:TIGR00606 968 KD---DYLKQKETELNTVNAQLEECEKHQEKINE-DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKE 1043
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568920979 479 ALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMIE-DNLLKLQVKRARELLYSKAEE 535
Cdd:TIGR00606 1044 MGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGyEKEIKHFKKELREPQFRDAEE 1101
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
22-130 |
2.34e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 22 QENKILEDQLAKLREEKSNLQDQLHDYEERInsmtshlknvnqeflftqSLYKARESEIESEEHFKAIAERELGRVKNET 101
Cdd:COG2433 413 EEIRRLEEQVERLEAEVEELEAELEEKDERI------------------ERLERELSEARSEERREIRKDREISRLDREI 474
|
90 100 110
....*....|....*....|....*....|.
gi 568920979 102 QLLEKEMAIIRERKSQMENNI--FKTTQKLD 130
Cdd:COG2433 475 ERLERELEEERERIEELKRKLerLKELWKLE 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
74-674 |
3.09e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 74 KARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLE-ESAH 152
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKaEEAK 1328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 153 KDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLE-LDKAAQDFRKIHlERQELIQQWENTI 231
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADaAKKKAEEKKKAD-EAKKKAEEDKKKA 1407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 232 EQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEgnRSQLKDEL 311
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK--KAEEAKKA 1485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 312 DTLKTTLNRTSSDLQALRKNISKVKKDifDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEV 391
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 392 EvqlgivKDVLFKKVQELQNEIAKEKALVSEIEGTR-SSLKHLNKQLHKLDFETLKQQEimysqdfyiqqverrMSRLKG 470
Cdd:PTZ00121 1564 K------KAEEAKKAEEDKNMALRKAEEAKKAEEARiEEVMKLYEEEKKMKAEEAKKAE---------------EAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 471 EINSEEKQALEAKILELKKTMDEKKSTlslleSQIKKLHDmmiEDNLLKLQVKRARELLYSKAEEVLSLE----KRKQQL 546
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKA-----EELKKAEE---ENKIKAAEEAKKAEEDKKKAEEAKKAEedekKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 547 GKDMEE--RAEEIKVHKA---MLTSQIRCVEQQRKTMSSEF----HERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYY 617
Cdd:PTZ00121 1695 KKEAEEakKAEELKKKEAeekKKAEELKKAEEENKIKAEEAkkeaEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 568920979 618 VIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSS 674
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSA 1831
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-595 |
3.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 252 KQEAREKEGVVKEKIKFLE---NEVENNIEYERKISVAERKVSKCRMDYQRHEGnrSQLKDELDTLKTTLNRTSSDLQAL 328
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDliiDEKRQQLERLRREREKAERYQALLKEKREYEG--YELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 329 RKNISKVKKDIFDETLRLQKLkhhnevvkhkLKMITEKTLSIEEKATNMEDMLKEEekgLKEVEVQLGIVKDVLFKKVQE 408
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEI----------EQLLEELNKKIKDLGEEEQLRVKEK---IGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 409 LQNEIAKEKALVSEIEGTRSSLKHLNKQLhkldfETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEKQALEAKILELK 488
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREI-----EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 489 KTMDEKKSTLSLLESQIKKLHDmmiEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTS-- 566
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQE---ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKye 468
|
330 340 350
....*....|....*....|....*....|
gi 568920979 567 -QIRCVEQQRKTMSSEFHERLSKIDKLKNR 595
Cdd:TIGR02169 469 qELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
20-747 |
3.58e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 20 ANQENKILEDQLAKLREEKSNLQDQLHDYEERI--------NSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAE 91
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEkklqeeelKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 92 RELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDL-------------KCQMNWDQQALEAWLEESAHKDSDSL 158
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLeqleeellakkklESERLSSAAKLKEEELELKSEEEKEA 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 159 TLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRD 238
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 239 QEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTL 318
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 319 NRTSSDLQALRKNI-----------SKVKKDIFDETLRLQKLKHHNEVVKH-KLKMITEKTLSIEEKATNMEDMLKEEEK 386
Cdd:pfam02463 568 RALTELPLGARKLRllipklklplkSIAVLEIDPILNLAQLDKATLEADEDdKRAKVVEGILKDTELTKLKESAKAKESG 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 387 GLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMS 466
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 467 RLKGEINSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDMMI------EDNLLKLQVKRARELLYSKAEEVLSLE 540
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKelaeerEKTEKLKVEEEKEEKLKAQEEELRALE 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 541 KRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVIK 620
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 621 AAQEKEELQREGDSLDAKINKAEKEIY-ALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYRCKQR 699
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEkENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 568920979 700 QIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQK 747
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
75-756 |
6.10e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 75 ARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRErksqMENNIfkttQKLDDLKCQMNWDQQALEAWLEESAHKD 154
Cdd:TIGR00606 228 SKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK----LDNEI----KALKSRKKQMEKDNSELELKMEKVFQGT 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 155 SDSLT-LQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETL----SAQLELDKAAQDFRKIHLERQELIQQWE- 228
Cdd:TIGR00606 300 DEQLNdLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLveqgRLQLQADRHQEHIRARDSLIQSLATRLEl 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 229 NTIEQMQRRDQEIDNC-ALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQL 307
Cdd:TIGR00606 380 DGFERGPFSERQIKNFhTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 308 KDELDTLKTTLNRTSSDLQALRK---NISKVKKDIFDETLR----------------LQKLKHHNEVVKHKLKMITEKTL 368
Cdd:TIGR00606 460 IKELQQLEGSSDRILELDQELRKaerELSKAEKNSLTETLKkevkslqnekadldrkLRKLDQEMEQLNHHTTTRTQMEM 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 369 SIEEKATNMEDMLKEEEKGLKEVEVQLG------IVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDF 442
Cdd:TIGR00606 540 LTKDKMDKDEQIRKIKSRHSDELTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 443 ETLKQQEIMYsQDFYIQQVERRMSRLKGEINSEEKQ---------ALEAKILELK--------------KTMDEKKSTLS 499
Cdd:TIGR00606 620 QLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSSKQramlagataVYSQFITQLTdenqsccpvcqrvfQTEAELQEFIS 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 500 LLESQIKKLHDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMS 579
Cdd:TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 580 SEFHER---LSKIDKLKNRYEILTVVMLPPEGEEEKTQS----YYVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNT 652
Cdd:TIGR00606 779 PEEESAkvcLTDVTIMERFQMELKDVERKIAQQAAKLQGsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQ 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 653 LQVLNSCNSNYKQSfkkvtpssdeyalKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEK 732
Cdd:TIGR00606 859 IQHLKSKTNELKSE-------------KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925
|
730 740
....*....|....*....|....
gi 568920979 733 QTLAFQLRKETEEQKPKLQRITKQ 756
Cdd:TIGR00606 926 EELISSKETSNKKAQDKVNDIKEK 949
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
19-594 |
6.11e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 19 VANQENKILED------QLAKLREEKSNLQDQLHDYEERINSMTSHLKnvNQEFLFTQSLYKARESEIESEEHFKAIA-- 90
Cdd:TIGR01612 749 INKDLNKILEDfknkekELSNKINDYAKEKDELNKYKSKISEIKNHYN--DQINIDNIKDEDAKQNYDKSKEYIKTISik 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 91 ERELGRVKNETQLLEKEMAIIRERKSQMENNIFKT--------TQKLDDLKCQMNWDQQAleawLEESAHKDSDSLT--L 160
Cdd:TIGR01612 827 EDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKidseheqfAELTNKIKAEISDDKLN----DYEKKFNDSKSLIneI 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 161 QKYSQQDDNKIRALT-----LQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQE-----LIQQWENT 230
Cdd:TIGR01612 903 NKSIEEEYQNINTLKkvdeyIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDntlidKINELDKA 982
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 231 IEQMQRRDQEIDNCALAlsRIKQEAREKEGVVKEKI---KFLENEVENNiEYERKISVAERKVSKCRMD-----YQRHEG 302
Cdd:TIGR01612 983 FKDASLNDYEAKNNELI--KYFNDLKANLGKNKENMlyhQFDEKEKATN-DIEQKIEDANKNIPNIEIAihtsiYNIIDE 1059
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 303 NRSQLKDELDTLKT-TLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEV--VKHKLKMITEKtlsIEEKATNMED 379
Cdd:TIGR01612 1060 IEKEIGKNIELLNKeILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEInkIKDDIKNLDQK---IDHHIKALEE 1136
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 380 MLKEEEKGLKEVEVQLGIVKDV------------LFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQlhKLDFETLKQ 447
Cdd:TIGR01612 1137 IKKKSENYIDEIKAQINDLEDVadkaisnddpeeIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKD--KTSLEEVKG 1214
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 448 QEIMYSQDfyiqqverrMSRLKGEINSEEKQALEAKILELKKTM---DEKKSTLSLLESQIKKLHDMMIEDNLLKLQVKR 524
Cdd:TIGR01612 1215 INLSYGKN---------LGKLFLEKIDEEKKKSEHMIKAMEAYIedlDEIKEKSPEIENEMGIEMDIKAEMETFNISHDD 1285
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 525 ARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKtmSSEFHERLSKIDKLKN 594
Cdd:TIGR01612 1286 DKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKH--NSDINLYLNEIANIYN 1353
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
245-456 |
7.97e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 245 ALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKIS----VAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNR 320
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqlaALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 321 TSSDLQALRKNISKV------------------KKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLK 382
Cdd:COG4942 95 LRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568920979 383 EEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDF 456
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
474-712 |
9.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 474 SEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHDmmiEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEER 553
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLK---QLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 554 AEEIKVHKAMLTSQIRcveqqrktmsseFHERLSKIDKLKnryeiltvVMLPPEGEEEKTQSYYVIKA-----AQEKEEL 628
Cdd:COG4942 96 RAELEAQKEELAELLR------------ALYRLGRQPPLA--------LLLSPEDFLDAVRRLQYLKYlaparREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 629 QREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTpssdeyALKIQLEEQKRTADERYRCKQRQIRELQEDI 708
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQ------KLLARLEKELAELAAELAELQQEAEELEALI 229
|
....
gi 568920979 709 QSME 712
Cdd:COG4942 230 ARLE 233
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
21-392 |
9.95e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 9.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 21 NQENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQSLYKARESEIESEEHFKAIAERELGRVKNE 100
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 101 TQLLEKEMAIIRERKSQMENNIFKT-------TQKLDDLKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRA 173
Cdd:TIGR04523 435 IIKNNSEIKDLTNQDSVKELIIKNLdntreslETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 174 LTLQLEKLtmeyNEKRKLLDSELTETLS--AQLELDKAAQDFRKIHLERQELIQQWENTIEQMQrrdQEIDNCALALSRI 251
Cdd:TIGR04523 515 LTKKISSL----KEKIEKLESEKKEKESkiSDLEDELNKDDFELKKENLEKEIDEKNKEIEELK---QTQKSLKKKQEEK 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920979 252 KQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKN 331
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKK 667
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568920979 332 ISKVKKDIFDETLRLQKLKhhNEVVKHKLKMITEKT-----LSIEEKATNMEDMLKEEEKGLKEVE 392
Cdd:TIGR04523 668 IKESKTKIDDIIELMKDWL--KELSLHYKKYITRMIrikdlPKLEEKYKEIEKELKKLDEFSKELE 731
|
|
| |
