|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
113-757 |
2.22e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 2.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 113 LVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKL 192
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEI-SRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 193 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASH-----------------KESEEALQKRLEEVTRE 255
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleaeleeleaeleelESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 256 LCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ 333
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 334 AQDTQASHA------EANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLR--------EKNWKAMEALALAERA 399
Cdd:TIGR02168 468 EELEEAEQAldaaerELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGvlselisvDEGYEAAIEAALGGRL 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 400 CEEKLRSLTQAKEESEkqlHLAEAQTKETLLALLPGLSI----SAHQNYAEWLQEFKEKGSELLKKPPTLEPSMD----- 470
Cdd:TIGR02168 548 QAVVVENLNAAKKAIA---FLKQNELGRVTFLPLDSIKGteiqGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 471 --IVLKLREAEETQNSLQAEcdqYRTILAE--------------TEGMLKDLQKSVEEEERvwKAKVGAAEEELHKSRVT 534
Cdd:TIGR02168 625 vlVVDDLDNALELAKKLRPG---YRIVTLDgdlvrpggvitggsAKTNSSILERRREIEEL--EEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 535 VKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELAL 614
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 615 VRQQLSDMRSHVEDgdvaGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRaagp 694
Cdd:TIGR02168 780 AEAEIEELEAQIEQ----LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS---- 851
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918958 695 lessgkEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAED 757
Cdd:TIGR02168 852 ------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-712 |
2.15e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 135 VKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEE 214
Cdd:COG1196 224 ELEAELLLLKLRELEAELEEL-EAELEELEAELEELEAELAELEAELEELRL-ELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 215 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEV 294
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 295 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVScLEKETSELKEAMEQ 374
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE-AAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 375 QKGKNNDLREKNWKAMEALALAERAcEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQEFKEK 454
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 455 GSELLkkppTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVT 534
Cdd:COG1196 540 LEAAL----AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 535 VKHLEDIVEK--LKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDEL 612
Cdd:COG1196 616 YVLGDTLLGRtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 613 ALVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRtacriqEELEKLRAA 692
Cdd:COG1196 696 EEALLAEEEEERELAE-----------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE------EEALEELPE 758
|
570 580
....*....|....*....|
gi 568918958 693 GPLESSGKEEITQLKERLEK 712
Cdd:COG1196 759 PPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
164-763 |
1.15e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 78.64 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 164 QQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKElVEKSEASRQEEQQRKALEAKAATFEKQV-----LQLQASH 238
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE-ARKAEDARKAEEARKAEDAKRVEIARKAedarkAEEARKA 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 239 KESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKeaRAENSQL 318
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK--KAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 319 TERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLR---EKNWKAMEALAL 395
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKkadEAKKKAEEAKKK 1330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 396 AERA---CEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV 472
Cdd:PTZ00121 1331 ADAAkkkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 473 LKLREAEETQNSLQAECDQYRTI-----LAETEGMLKDLQKSVEEEERVWKAKVGAaeEELHKSRVTVKHLEDI--VEKL 545
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKAdeakkKAEEAKKADEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAkkADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 546 KGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLrqlllESQSQLDEA-KSEAQKQSDEL--------ALVR 616
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA-----EEAKKADEAkKAEEKKKADELkkaeelkkAEEK 1563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 617 QQLSDMRSHVEDGDVAGSPA--VPPAEQDPMKLKTQLERTEATLEAEQTRRQkltaefEEAQRTACRIQEELEKLRAAGP 694
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKA------EEAKIKAEELKKAEEEKKKVEQ 1637
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568918958 695 LESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAEDGSSSKE 763
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-754 |
2.53e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 186 NTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHAN 265
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 266 LRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEAN 345
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 346 QQQTRLKELESQVSC---LEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAcEEKLRSLTQAKEESEKQLHLAE 422
Cdd:COG1196 398 LAAQLEELEEAEEALlerLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL-EEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 423 AQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETqnslqaecdqYRTILAETEGM 502
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA----------YEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 503 LkdLQKSVEEEERVWKAKVGAAEEELhKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAK 582
Cdd:COG1196 547 A--LQNIVVEDDEVAAAAIEYLKAAK-AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 583 EVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDvagspavppaeqdpMKLKTQLERTEATLEAEQ 662
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL--------------AALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 663 TRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEK 742
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
570
....*....|..
gi 568918958 743 DTVKKLQEQLGK 754
Cdd:COG1196 770 ERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-612 |
9.04e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 9.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 50 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 129
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 130 SYRdhvkEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEA 209
Cdd:COG1196 314 LEE----RLEELEEELAELEEELEE--------LEEELEELEEELEEAEEELEEAEA-ELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 210 SRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS 289
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 290 SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELK 369
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 370 EAMEQQKGKNNDLREknwkAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQ 449
Cdd:COG1196 541 EAALAAALQNIVVED----DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 450 EFkekGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAEcdqyRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELH 529
Cdd:COG1196 617 VL---GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE----GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 530 KSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQS 609
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
...
gi 568918958 610 DEL 612
Cdd:COG1196 770 ERL 772
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-754 |
2.33e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 2.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 63 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKkQLVAREQEIAAVQARMQASYRDHVKEVQQLQ 142
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 143 GKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQvesKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 222
Cdd:TIGR02168 400 NEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 223 KAATFEKQVLQLQAsHKESEEALQKRLEEVTRELcRAQTSHANLRADAEKAQEQQQRVAE---------LHSKLQSSEVE 293
Cdd:TIGR02168 476 ALDAAERELAQLQA-RLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGVLSELISVDEgyeaaieaaLGGRLQAVVVE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 294 ------------VKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQA------------------SHAE 343
Cdd:TIGR02168 554 nlnaakkaiaflKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvvdDLDN 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 344 ANQQQTRLKELESQVS------------------------CLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERA 399
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELE----KALAELRKELEE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 400 CEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAewLQEFKEKGSELLKKPPTLEPsmdivlKLREAE 479
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEE------ELAEAE 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 480 ETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEER---VWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVR 556
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 557 EHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDgdvagspa 636
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-------- 933
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 637 vppAEQDPMKLKTQL-ERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLraaGPLESSGKEEITQLKERLEKEKR 715
Cdd:TIGR02168 934 ---LEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKERYDFLTA 1007
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 568918958 716 LTSDLGRAAIKLQELL-KTTQEQLTKEKDTVKKLQEQLGK 754
Cdd:TIGR02168 1008 QKEDLTEAKETLEEAIeEIDREARERFKDTFDQVNENFQR 1047
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
60-743 |
1.54e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 60 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 139
Cdd:PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 140 QLQGKIRTLQeQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNkELVEKSEASRQEEQQRKA 219
Cdd:PTZ00121 1234 EAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 220 LEAKAATFEKQVLQlqaSHKESEEALQKRLEEvTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKlqssevEVKSKCE 299
Cdd:PTZ00121 1312 EEAKKADEAKKKAE---EAKKKADAAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE------EAKKKAD 1381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 300 ELSSLHGQLKEARAENSQLTERIRSIEALLEAgqaqdtqashAEANQQQTRLKELESQVscleKETSELKEAMEQQKgKN 379
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKA----------AAAKKKADEAKKKAEEK----KKADEAKKKAEEAK-KA 1446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 380 NDLREKNWKAMEALALAERAceEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahqnyaewlQEFKEKGSELL 459
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKKADEAKKKA---------------------EEAKKKADEAK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 460 KKpptlEPSMDIVLKLREAEETQNSLQAEcdqyrtiLAETEGMLKDLQKS--VEEEERVWKAKVGAAEEELHKSRVTVKH 537
Cdd:PTZ00121 1504 KA----AEAKKKADEAKKAEEAKKADEAK-------KAEEAKKADEAKKAeeKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 538 LEDIVEKLKG--ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAglrqlllESQSQLDEAKSEAQKQSDELALV 615
Cdd:PTZ00121 1573 EEDKNMALRKaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-------EELKKAEEEKKKVEQLKKKEAEE 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 616 RQQLSDMRSHVEDGDVAGSPAVPPAEQDpmklKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPL 695
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEED----KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568918958 696 ---ESSGKEEITQLKERLEKEKRLTSDLgraaiKLQELLKTTQEQLTKEKD 743
Cdd:PTZ00121 1722 kkaEEENKIKAEEAKKEAEEDKKKAEEA-----KKDEEEKKKIAHLKKEEE 1767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
52-606 |
1.59e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 52 KATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASY 131
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 132 R----DHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQEnsilrdalnQATSQVESKQNTELAKLRQELSKVNKELVEKS 207
Cdd:PTZ00121 1403 DkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---------EAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 208 EASRQEEQQRKALEA--KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHS 285
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 286 KLQSSEVEVKSKCEELSSLHGQLKEA--RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEK 363
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 364 ETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahQN 443
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------------AE 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 444 YAEWLQEFKEKGSELLKKPPTLEPSMDI-VLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVG 522
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEEnKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 523 AAEEELHKsrvtvkhledivEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAK 602
Cdd:PTZ00121 1780 VIEEELDE------------EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
....
gi 568918958 603 SEAQ 606
Cdd:PTZ00121 1848 AFEK 1851
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
188-742 |
2.55e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 2.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 188 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLqashKESEEALQKRLEEVTrELCRAQTSHANLR 267
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL----KKEIEELEEKVKELK-ELKEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 268 ADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAgqAQDTQASHAEANQQ 347
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL--YEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 348 QTRLK-----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKN---WKAMEALALAERACEEKLRSLTQAKEESEKQLH 419
Cdd:PRK03918 378 KKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIkelKKAIEELKKAKGKCPVCGRELTEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 420 LAEAQTKETLLALLpglsisahQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNS-----LQAECDQYRT 494
Cdd:PRK03918 458 TAELKRIEKELKEI--------EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleeLEKKAEEYEK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 495 I---LAETEGMLKDLQKSVEEEERVwKAKVGAAEEELHKSRVTVKHLEDIVEKLKgeLESSDQVREHTSHLEAELEKHMA 571
Cdd:PRK03918 530 LkekLIKLKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKELEELG--FESVEELEERLKELEPFYNEYLE 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 572 AASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGspavppAEQDPMKLKTQL 651
Cdd:PRK03918 607 LKDAE-----KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE------LREEYLELSREL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 652 ERTEATLEAEQTRRqkltaefEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAI-KLQEL 730
Cdd:PRK03918 676 AGLRAELEELEKRR-------EEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALsKVGEI 748
|
570
....*....|..
gi 568918958 731 LKTTQEQLTKEK 742
Cdd:PRK03918 749 ASEIFEELTEGK 760
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
136-583 |
2.57e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 136 KEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQ--E 213
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKkaE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 214 EQQRKALEAKAATFEKQV---LQLQASHKESEEALQKRLEEVTR-ELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS 289
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKadeAKKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 290 SEV--EVKSKCEELSSLHGQLKEA-----RAENSQLTERIRSIEALLEAGQAQDT-QASHAEANQQQTRLKELESQVSCL 361
Cdd:PTZ00121 1482 AKKadEAKKKAEEAKKKADEAKKAaeakkKADEAKKAEEAKKADEAKKAEEAKKAdEAKKAEEKKKADELKKAEELKKAE 1561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 362 EKETSELKEAMEQQKGKNNDLREKNWKAMEA--LALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSIS 439
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEAriEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 440 AHQNYAEWLQEFKEKGSELLKKPPTLEPSMDivlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKA 519
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918958 520 KVGAAEEELHKSRVTVKHLEDIVEKLKG-ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKE 583
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
132-752 |
3.22e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.54 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 132 RDHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQnTELAKLRQELSKVNKELVEKSEASR 211
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQ-ETSAELNQLLRTLDDQWKEKRDELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 212 QE-----------EQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEK-----AQE 275
Cdd:pfam12128 308 GElsaadaavakdRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRrrskiKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 276 QQQRVAELHSKLQSS-EVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEA------GQAQDTQASHAEANQQQ 348
Cdd:pfam12128 388 NNRDIAGIKDKLAKIrEARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSrlgelkLRLNQATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 349 TRLKELESQVSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHlaeaqtkeT 428
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELR----QARKRRDQASEALRQASRRLEERQSALDELELQLFPQAG--------T 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 429 LLALLpglsisaHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV----------LKLREAEETQNSLQAECDQYRTILAE 498
Cdd:pfam12128 536 LLHFL-------RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGsvggelnlygVKLDLKRIDVPEWAASEEELRERLDK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 499 TEGML---KDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEsSDQVRehtshLEAELEKHMAAASA 575
Cdd:pfam12128 609 AEEALqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-SEKDK-----KNKALAERKDSANE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 576 ECQNYAKEvagLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMK-LKTQLERT 654
Cdd:pfam12128 683 RLNSLEAQ---LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKaLETWYKRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 655 EATLEAEQTRRQKLTAEFEEAQRTACRI-QEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKT 733
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIaVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKL 839
|
650
....*....|....*....
gi 568918958 734 TQEQLTKEKDTVKKLQEQL 752
Cdd:pfam12128 840 RRAKLEMERKASEKQQVRL 858
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
136-372 |
3.35e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 136 KEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKLRQELSKVNKELvekSEASRQEEQ 215
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAEL---AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 216 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVK 295
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918958 296 skceELSSLHGQLKEARAENSQLTERIRSIEALLEagqaQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAM 372
Cdd:COG4942 175 ----ELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
271-751 |
5.69e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 5.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 271 EKAQEQQQRVAELHSKLQSSEVEVKSKCEELSS--LHGQLKEARAENSQLTERIRSIEALLEA-----GQAQDTQASHAE 343
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQIEEKEEkdLHERLNGLESELAELDEEIERYEEQREQaretrDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 344 ANQQQTRLK----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALAL---AERACEEKLRSLTQAKEESEK 416
Cdd:PRK02224 249 RREELETLEaeieDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 417 QL---------HLAEAQTKETLLALLPGLSISAH----------QNYAEWLQEFKEKGSELLKKPPTLEPSM-DIVLKLR 476
Cdd:PRK02224 329 RLeecrvaaqaHNEEAESLREDADDLEERAEELReeaaeleselEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 477 EAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKA-KVGAAEEELHKSRV--TVKHLEDIVEKLKGELEssd 553
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgKCPECGQPVEGSPHveTIEEDRERVEELEAELE--- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 554 QVREHTSHLEAELEKHMAAASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAG 633
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAE-----DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 634 SPAVPPAEQDPMKLKTqLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEeitQLKERLEKE 713
Cdd:PRK02224 561 AEAEEEAEEAREEVAE-LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRE---RLAEKRERK 636
|
490 500 510
....*....|....*....|....*....|....*....
gi 568918958 714 KRLTSDLGRAAI-KLQELLKTTQEQLTKEKDTVKKLQEQ 751
Cdd:PRK02224 637 RELEAEFDEARIeEAREDKERAEEYLEQVEEKLDELREE 675
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
132-327 |
3.06e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 132 RDHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASR 211
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 212 QEEQQRKALEAKAATFEKQVLQLQASHKES----EEALQKRLEEVTRELCRAQTSHANLRADAEKA-----------QEQ 276
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALglplpasaeefAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568918958 277 QQRVAELHSKLQSSEVEVKskcEELSSLHGQLKEARAENSQLTERIRSIEA 327
Cdd:COG4913 386 RAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
131-375 |
9.11e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 9.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 131 YRDHVKEVQQLQGKIRTLQEQLE--NGPNTQLARLQQENSILRDALNQATSQVESKQntELAKLRQELSKVN-----KEL 203
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARE--RLAELEYLRAALRlwfaqRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 204 VEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ----KRLEEVTRELCRAQTSHANLRadaEKAQEQQQR 279
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERE---RRRARLEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 280 VAELHSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQashaEANQQQTRLKELESQVS 359
Cdd:COG4913 368 LAALGLPLPASA-------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR----ELRELEAEIASLERRKS 436
|
250
....*....|....*.
gi 568918958 360 CLEKETSELKEAMEQQ 375
Cdd:COG4913 437 NIPARLLALRDALAEA 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
185-417 |
1.28e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 185 QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKEseeaLQKRLEEVTRELCRAQTSHA 264
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 265 NLRADAEKAQEQ-QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAE 343
Cdd:COG4942 94 ELRAELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE-AE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918958 344 ANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERACEEKLRSLTQAKEESEKQ 417
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
115-285 |
1.47e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 115 AREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQ 194
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL-EAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 195 ELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 274
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170
....*....|.
gi 568918958 275 EQQQRVAELHS 285
Cdd:COG4913 426 AEIASLERRKS 436
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
112-413 |
1.98e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 112 QLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPNtQLARLQQENSILRDALNQATSQVESKQNtELAK 191
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDLSSLEQ-EIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 192 LRQELSKVNKELVEKSEASRQEEQQRKALEAKAAtfEKQVLQLQAsHKESEEALQKRLEEVTRELCRAQTSHANLRADAE 271
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQA-ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 272 KA-QEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQdtqashaeANQQQTR 350
Cdd:TIGR02169 833 KEiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ--------LRELERK 904
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918958 351 LKELESQVSCLEKETSELKEAMEQQKGKNNDLrEKNWKAMEALAlAERACEEKLRSLTQAKEE 413
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIP-EEELSLEDVQAELQRVEE 965
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
61-371 |
1.98e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 61 AILKRQLEEKEKLlATEQEDAAVAKSKLRELNK----EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQ---ASYRD 133
Cdd:TIGR02169 191 LIIDEKRQQLERL-RREREKAERYQALLKEKREyegyELLKEKEALERQKEAIERQLASLEEELEKLTEEISeleKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 134 HVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQE 213
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE-RLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 214 EQQRKALEA----KAATFEKQVLQLQASHKESEE------ALQKRLEEVTRELCRAQTshaNLRADAEKAQEQQQRVAEL 283
Cdd:TIGR02169 349 RKRRDKLTEeyaeLKEELEDLRAELEEVDKEFAEtrdelkDYREKLEKLKREINELKR---ELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 284 HSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAEANQQQTRLKELESQVSCLEK 363
Cdd:TIGR02169 426 NAAIAGIE-------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK-EEYDRVEKELSKLQRELAEAEA 497
|
....*...
gi 568918958 364 ETSELKEA 371
Cdd:TIGR02169 498 QARASEER 505
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
63-297 |
5.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 63 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASekakaaageakVKKQLVAREQEIAAVQARMQASyrdhVKEVQQLQ 142
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRALEQELAALEAELAEL----EKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 143 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 222
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918958 223 KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSK 297
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
121-407 |
5.87e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.91 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 121 AAVQARMQAsyrdhVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnTELAKL------ 192
Cdd:PRK11281 39 ADVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddnde 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 193 --RQELSKVNKELVEKSEASRQEEQQRkaLEAKAATFEKQVLQLQASHKESEEAL---QKRLEEVTRELCRAQTSHANLR 267
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 268 ADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELssLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQ 347
Cdd:PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918958 348 QTRLKELESQVscLEKETS---ELKEAMEQQKGKNN-----DLREKNWkaMEALALAERACEEKLRSL 407
Cdd:PRK11281 269 DEAARIQANPL--VAQELEinlQLSQRLLKATEKLNtltqqNLRVKNW--LDRLTQSERNIKEQISVL 332
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
64-330 |
6.51e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 64 KRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAsekakaaageakvkkQLVAREQEIAAVQArmqasYRDHVKEVQQLQG 143
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD---------------ALQERREALQRLAE-----YSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 144 KIRTLQEQLEN--GPNTQLARLQQENSILRDALNQATSQVESKQ------NTELAKLRQELSKVNKELVEKSEASRQEEQ 215
Cdd:COG4913 669 EIAELEAELERldASSDDLAALEEQLEELEAELEELEEELDELKgeigrlEKELEQAEEELDELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 216 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSH--------ANLRADAEKAQEqqqrVAELHSKL 287
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFnrewpaetADLDADLESLPE----YLALLDRL 824
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568918958 288 QSSEV--------EVKSKC--EELSSLHGQLKEARAEnsqLTERIRSIEALLE 330
Cdd:COG4913 825 EEDGLpeyeerfkELLNENsiEFVADLLSKLRRAIRE---IKERIDPLNDSLK 874
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
189-375 |
8.62e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 189 LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKESEEALQKRLEEVTRELcraqtshANLRA 268
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDVASAEREIAELEAEL-------ERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 269 DAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQ 348
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190
....*....|....*....|....*....|
gi 568918958 349 TR---LKELESQVSCLEKETSELKEAMEQQ 375
Cdd:COG4913 763 VErelRENLEERIDALRARLNRAEEELERA 792
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
112-327 |
1.11e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 112 QLVAREQEIAAVQARMQASYRDHvkEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESK------- 184
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKN--GLVDLSEEAKLLLQQLSEL-ESQLAEARAELAEAEARLAALRAQLGSGpdalpel 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 185 -QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVlqlqashkesEEALQKRLEEVTRELCRAQTSH 263
Cdd:COG3206 260 lQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918958 264 ANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEA 327
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
88-562 |
1.14e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 88 LRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARmQASYRDHVKEVQQLQGKIRTLQEQLENGPNT-QLARLQQE 166
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELREElEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 167 NSILRDALNQATSQVESKQnTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ 246
Cdd:COG4717 127 LLPLYQELEALEAELAELP-ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 247 KRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELhsklqssevEVKSKCEELSSLHGQLKEARAENSQLTERIRSIE 326
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALE---------ERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 327 AL------LEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAC 400
Cdd:COG4717 277 GVlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 401 EEKLRSLTQAKEESEKQ--LHLAEAQTKETLLALLpglsiSAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV------ 472
Cdd:COG4717 357 EELEEELQLEELEQEIAalLAEAGVEDEEELRAAL-----EQAEEYQELKEELEELEEQLEELLGELEELLEALdeeele 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 473 LKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKS-----VEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLkg 547
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEEDgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEY-- 509
|
490
....*....|....*
gi 568918958 548 ELESSDQVREHTSHL 562
Cdd:COG4717 510 REERLPPVLERASEY 524
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
190-425 |
3.33e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 190 AKLRQELSKVNKelvekseaSRQEEQQRKALEAkaaTFEKQVLQLQ--ASHKESEEALQKRLEEVTRELCRAQTSHANLR 267
Cdd:PRK11281 39 ADVQAQLDALNK--------QKLLEAEDKLVQQ---DLEQTLALLDkiDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 268 ADAEKAQEQ----------QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDT 337
Cdd:PRK11281 108 DDNDEETREtlstlslrqlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 338 QASHAEANQQQTRLKELESQVSCLEKET---SELKEAMEQQKgknNDLREKNWKAMEALALAERACEEKLRSLTQAK-EE 413
Cdd:PRK11281 188 ALRPSQRVLLQAEQALLNAQNDLQRKSLegnTQLQDLLQKQR---DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTvQE 264
|
250
....*....|..
gi 568918958 414 SEKQLHLAEAQT 425
Cdd:PRK11281 265 AQSQDEAARIQA 276
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
66-222 |
3.51e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 66 QLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQ-LVAREQEIAAVQARMQASYRDHVKEVQQLQGK 144
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918958 145 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQveskqnteLAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 222
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAREASLQAQ--------LAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-679 |
5.10e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 273 AQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAqdtqashaEANQQQTRLK 352
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ--------EEEKLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 353 ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALA-LAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtlla 431
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---- 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 432 llpglsISAHQNYAEWLQEFKEKGSEllkkpptlepsmDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVE 511
Cdd:TIGR02169 817 ------IEQKLNRLTLEKEYLEKEIQ------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 512 EEErvwkAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEssdQVREHTSHLEAELEkhmaAASAECQNYAKEVaglRQLL 591
Cdd:TIGR02169 879 DLE----SRLGDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLE----ALEEELSEIEDPK---GEDE 944
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 592 LESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAgspavppaeqdpmKLKTQLERTEATLEAEQTRRQKLTAE 671
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL-------------KRLDELKEKRAKLEEERKAILERIEE 1011
|
....*...
gi 568918958 672 FEEAQRTA 679
Cdd:TIGR02169 1012 YEKKKREV 1019
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
126-398 |
5.12e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 126 RMQASYRDHV--KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKEL 203
Cdd:COG5022 798 KLQPLLSLLGsrKEYRSYLACIIKLQKTIKRE-KKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 204 VEKSEASRQEEQQ----RKALEAKAATFEKQVLQLQASHKESE-EALQKRLEEVTRELCraqtshANLRADAEKAQEQQQ 278
Cdd:COG5022 877 VELAERQLQELKIdvksISSLKLVNLELESEIIELKKSLSSDLiENLEFKTELIARLKK------LLNNIDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 279 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQ--DTQASHAEANQQQTRLKELES 356
Cdd:COG5022 951 VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQygALQESTKQLKELPVEVAELQS 1030
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568918958 357 QVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAER 398
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLR 1072
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
188-427 |
5.84e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 5.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 188 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKEsEEALQKRLEEVTRELCRAQTSHANLR 267
Cdd:COG3096 837 ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFIQ 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 268 ADAEKAQ-------------EQQQRVAELHSKLQSSEVEVKSKCEELSSL------------HGQLKEARAENSQLTERI 322
Cdd:COG3096 914 QHGKALAqleplvavlqsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVvqrrphfsyedaVGLLGENSDLNEKLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 323 RSIE-ALLEAG-QAQDTQASHAEANQQQTRLKelesqvSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERA- 399
Cdd:COG3096 994 EQAEeARREAReQLRQAQAQYSQYNQVLASLK------SSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRRDe 1063
|
250 260
....*....|....*....|....*...
gi 568918958 400 CEEKLRSLTQAKEESEKQLHLAEAQTKE 427
Cdd:COG3096 1064 LHEELSQNRSRRSQLEKQLTRCEAEMDS 1091
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
196-757 |
9.94e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 9.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 196 LSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQAsHKESEEALQKRLEEVtrelcraqtsHANLRADAEKAQE 275
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESL----------EGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 276 QQQRVAELHSKLQssevEVKSKCEELSSLHGQLKEAR---AENSQLTERIRSIEALLEAGQAqdtqashaEANQQQTRLK 352
Cdd:PRK03918 264 LEERIEELKKEIE----ELEEKVKELKELKEKAEEYIklsEFYEEYLDELREIEKRLSRLEE--------EINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 353 ELESqvscLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLAL 432
Cdd:PRK03918 332 ELEE----KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 433 LpglSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEE 512
Cdd:PRK03918 408 S---KITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 513 EErvwkaKVGAAEEELHKSRVTVKHLEDIVEKLKG-ELESSDQVREHTSHLEAELEKhmaaASAECQNYAKEVAGLRQLl 591
Cdd:PRK03918 485 LE-----KVLKKESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIK----LKGEIKSLKKELEKLEEL- 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 592 lesQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAE 671
Cdd:PRK03918 555 ---KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 672 FEEAQRTACRIQEELEKLRAAGPLESSGK-EEITQLKERLEKE-KRLTSDLGRAAIKLQEL------LKTTQEQLTKEKD 743
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRElAGLRAELEELEKRREEIkktlekLKEELEEREKAKK 711
|
570
....*....|....
gi 568918958 744 TVKKLQEQLGKAED 757
Cdd:PRK03918 712 ELEKLEKALERVEE 725
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-742 |
1.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 225 ATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELS 302
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElrEELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 303 SLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRlkelESQVSCLEKETSELKEAMEQQKGKNNDL 382
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ----EELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 383 REKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQnyaewlqefkekGSELLKKP 462
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL------------GGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 463 PTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQksvEEEERVWKAKVGAAEEElhkSRVTVKHLEDIV 542
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE---EEELEELLAALGLPPDL---SPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 543 EKLKGELESSDQVREH--TSHLEAELEKHMAAASAEcqnyakEVAGLRQLLlesqsqldEAKSEAQKQSDELALVRQQLS 620
Cdd:COG4717 347 EELQELLREAEELEEElqLEELEQEIAALLAEAGVE------DEEELRAAL--------EQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 621 DmrshvedgdVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEaqrtacrIQEELEKLRAAGPLessgk 700
Cdd:COG4717 413 E---------LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE-------LEAELEQLEEDGEL----- 471
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568918958 701 EEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEK 742
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
187-567 |
2.33e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 187 TELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATF----------EKQVLQLQASHKESEEALQKRLEEVTREL 256
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 257 CRAQTSHANLRADA----EKAQEQQQRVAELHSKLQSSEVEVKSK----------------------------------- 297
Cdd:PRK02224 338 QAHNEEAESLREDAddleERAEELREEAAELESELEEAREAVEDRreeieeleeeieelrerfgdapvdlgnaedfleel 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 298 CEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ----AQDTQAS-HAEANQQ--------QTRLKELESQVSCLEKE 364
Cdd:PRK02224 418 REERDELREREAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSpHVETIEEdrerveelEAELEDLEEEVEEVEER 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 365 TSELKEAMEQQKGKnNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKqlHLAEAQTKETLLAllpglsiSAHQNY 444
Cdd:PRK02224 498 LERAEDLVEAEDRI-ERLEERREDLEELIAERRETIEEKRERAEELRERAAE--LEAEAEEKREAAA-------EAEEEA 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 445 AEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQyRTILAETEGMLKDLQKSVEEEERVWKAKV-GA 523
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREK-REALAELNDERRERLAEKRERKRELEAEFdEA 646
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568918958 524 AEEELHKSRVT-VKHLEDIVEKLKGELESSDQVREHTSHLEAELE 567
Cdd:PRK02224 647 RIEEAREDKERaEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
195-756 |
5.05e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 195 ELSKVNKELVEKSEASRQEEQQRKALEAKAatfekqVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 274
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQEMQMERDA------MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 275 EQQQRVA--------ELHSKLQSSEVEVKSKCEE---LSSLHGQ---------LKEARAENSQLTERIRSIEALLEAGQA 334
Cdd:pfam15921 173 EQLRKMMlshegvlqEIRSILVDFEEASGKKIYEhdsMSTMHFRslgsaiskiLRELDTEISYLKGRIFPVEDQLEALKS 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 335 QDTQASHAEANQQQTRLKELesqVSCLEKETSELKEAMEQQKGKNNDL-----------REKNWKAMEALALAERACEEK 403
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIqsqleiiqeqaRNQNSMYMRQLSDLESTVSQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 404 LRSLTQAK-------EESEKQLHLAEAQTKE-------------TLLALLPGLSISAHQNYAEWLQEfKEKGSELLKKPP 463
Cdd:pfam15921 330 RSELREAKrmyedkiEELEKQLVLANSELTEarterdqfsqesgNLDDQLQKLLADLHKREKELSLE-KEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 464 TLEPSMDIV--------LKLREAEETQNSLQAECD-QYRTILAETEGMLKDLQK--SVEEEERVWKAKVGAAEEELHKSR 532
Cdd:pfam15921 409 GNSITIDHLrrelddrnMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEELTAKK 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 533 VTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDEAKSEAQKQSDEL 612
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 613 ALVRQQLSDMRSHV-EDGDVAGSPAVPPAEqdpmkLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRA 691
Cdd:pfam15921 565 EILRQQIENMTQLVgQHGRTAGAMQVEKAQ-----LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN 639
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918958 692 AGPLESSGKEEITQLKERLEKE-KRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 756
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEvKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
60-752 |
5.21e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 60 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 139
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 140 QLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKA 219
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 220 LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRAD-----AEKAQEQQQRVAELHSKLQSSEVEV 294
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 295 KSKCEELSSLHGQLKE-ARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvscLEKETSELKEAME 373
Cdd:pfam02463 404 EKEAQLLLELARQLEDlLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE----LKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 374 QQKGKNNDLREKNWKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLS---------------- 437
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQ-KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvaistavivevsatad 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 438 --ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILA---ETEGMLKDLQKSVEE 512
Cdd:pfam02463 559 evEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 513 EERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLL 592
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 593 ESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEAT----LEAEQTRRQKL 668
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTeklkVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 669 TAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKL 748
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
....
gi 568918958 749 QEQL 752
Cdd:pfam02463 879 LEEQ 882
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
214-384 |
5.28e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 5.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 214 EQQRKALEAKAATFEKQVLQLQASHK-----ESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQ 288
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 289 SSEVevkskceeLSSLHGQLKEARAENSQLTER-------IRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCL 361
Cdd:COG3206 261 QSPV--------IQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASL 332
|
170 180
....*....|....*....|...
gi 568918958 362 EKETSELKEAMEQQKGKNNDLRE 384
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRR 355
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-760 |
6.89e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 217 RKALEAKAATFEKQVLQLQASHKESEEALQKR--LEEvtrelcraqtshanLRADAEKAQEQQQRVAELHSKLQSSEVEV 294
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIelLEP--------------IRELAERYAAARERLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 295 KSKCEELssLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQ 374
Cdd:COG4913 286 AQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 375 QKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQ------TKETLLALLPGLSiSAHQNYAEWL 448
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAlrdlrrELRELEAEIASLE-RRKSNIPARL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 449 QEFKEKGSELLKKPPTlepSMDIV---LKLREAEET-QNSLQAECDQYRTILAETEGMLKDLQKSVEE---EERVWKAKV 521
Cdd:COG4913 443 LALRDALAEALGLDEA---ELPFVgelIEVRPEEERwRGAIERVLGGFALTLLVPPEHYAAALRWVNRlhlRGRLVYERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 522 GAAEEELHKSRVTVKHLEDIVEKLKGELES--SDQVREHTSHL----EAELEKHMAAASAECQNYAKEVAG--------L 587
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDFKPHPFRAwlEAELGRRFDYVcvdsPEELRRHPRAITRAGQVKGNGTRHekddrrriR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 588 RQLLL--ESQSQLDEAKSEAQKQSDELALVRQQLSdmrshvedgdvagspavppaeqdpmKLKTQLERTEATLEAEQTRR 665
Cdd:COG4913 600 SRYVLgfDNRAKLAALEAELAELEEELAEAEERLE-------------------------ALEAELDALQERREALQRLA 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 666 QKLTAE--FEEAQRTACRIQEELEKLRAAGPlessgkeEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKD 743
Cdd:COG4913 655 EYSWDEidVASAEREIAELEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEE 727
|
570
....*....|....*..
gi 568918958 744 TVKKLQEQLGKAEDGSS 760
Cdd:COG4913 728 ELDELQDRLEAAEDLAR 744
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
193-428 |
7.54e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 193 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESeealQKRLEEVTRELCRAQTSHANLradaEK 272
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET----QNTLNQLNKQIDELNASIAKL----EQ 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 273 AQEQQQRV--AEL--------HSKLQ---SSEVEVKSkcEELSSLHGQLKEARAEN----SQLTERIRSIEALLEAGQAQ 335
Cdd:PRK11637 118 QQAAQERLlaAQLdaafrqgeHTGLQlilSGEESQRG--ERILAYFGYLNQARQETiaelKQTREELAAQKAELEEKQSQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 336 DTQASHAEANQQQTrlkeLESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERacEEKLRSLTQAKEESE 415
Cdd:PRK11637 196 QKTLLYEQQAQQQK----LEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER--EAKARAEREAREAAR 269
|
250
....*....|...
gi 568918958 416 KQLHLAEAQTKET 428
Cdd:PRK11637 270 VRDKQKQAKRKGS 282
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
361-722 |
9.42e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 361 LEKETSELKEAMEQQKGKNNDLREKNwKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETllallpglSISA 440
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKR-QQLERLR-REREKAERYQALLKEKREYEGYELLKEKEALER--------QKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 441 HQNYAEWLQEFKEKGSELLKKppTLEPSMDIVLKLREAEETQNSL-QAECDQYRTILAETEGMLKDLQKSVEEEERvwka 519
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISE--LEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKER---- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 520 KVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD 599
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 600 EAKSE-------AQKQSDELALVRQQLSDMRSHVED--GDVAGSPAVPPAEQDPMKLKTQ-LERTEATLEAEQTRRQKLT 669
Cdd:TIGR02169 396 KLKREinelkreLDRLQEELQRLSEELADLNAAIAGieAKINELEEEKEDKALEIKKQEWkLEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568918958 670 AEFEEAQRTACRIQEELEKL----RAAGPLESSGKEEITQLKERLEKEKRLTSDLGR 722
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAeaqaRASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
63-567 |
9.98e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 9.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 63 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQE----IAAVQARMQASYRDHVKEV 138
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdIAGIKDKLAKIREARDRQL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 139 QQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRK 218
Cdd:pfam12128 411 AVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 219 ALEAKAA--TFEKQVLQLQASHKESEEaLQKRLEEVTRELC-RAQTSHANLRADAEKAQEQQQRV---AELHSKLQSSEV 292
Cdd:pfam12128 491 QSELRQArkRRDQASEALRQASRRLEE-RQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIGKVispELLHRTDLDPEV 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 293 EVKSKCEELS--SLHGQLKEARAENS-QLTERIRSIEALLEAGqAQDTQASHAEANQQQTRL-KELESQVSCLEKETSEL 368
Cdd:pfam12128 570 WDGSVGGELNlyGVKLDLKRIDVPEWaASEEELRERLDKAEEA-LQSAREKQAAAEEQLVQAnGELEKASREETFARTAL 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 369 KEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETL------------------- 429
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKreartekqaywqvvegald 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 430 --LALLPGLSISAHQNYAEWLQEFKEKGSELLKKpptLEPSMDIVLKLREAEET----------------------QNSL 485
Cdd:pfam12128 729 aqLALLKAAIAARRSGAKAELKALETWYKRDLAS---LGVDPDVIAKLKREIRTlerkieriavrrqevlryfdwyQETW 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 486 QAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAE 565
Cdd:pfam12128 806 LQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQ 885
|
..
gi 568918958 566 LE 567
Cdd:pfam12128 886 GS 887
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
243-515 |
1.08e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 243 EALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVE-VKSKCEELSSLHGQLKEARAENSQLTER 321
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADEtLADRLEELREELDAAQEAQAFIQQHGKA 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 322 IRSIEALLEAGQA--QDTQASHAEANQQQTRLKELESQVSCLEkETSELKEAM-----EQQKGKNNDLREKnwkameala 394
Cdd:COG3096 919 LAQLEPLVAVLQSdpEQFEQLQADYLQAKEQQRRLKQQIFALS-EVVQRRPHFsyedaVGLLGENSDLNEK--------- 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 395 laeraCEEKLRSLTQAKEESEKQLHLAEAQTKETlLALLPGLSiSAHQNYAEWLQEFKEKGSEL-LKKPPTLEPSMDIVL 473
Cdd:COG3096 989 -----LRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLK-SSRDAKQQTLQELEQELEELgVQADAEAEERARIRR 1061
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568918958 474 KLREAEETQNslQAECDQYRTILAETEGMLKDLQKSVEEEER 515
Cdd:COG3096 1062 DELHEELSQN--RSRRSQLEKQLTRCEAEMDSLQKRLRKAER 1101
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
207-427 |
1.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 207 SEASRQEEQQRKALEAKAATFEKQVLQLQAShkesEEALQKRLEEVTRELCRAQtshanlradaEKAQEQQQRVAELHSK 286
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALA----------RRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 287 LQSSEVEVKSKCEELSSLHGQLKEaRAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETS 366
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568918958 367 ELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 427
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
60-431 |
1.12e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 60 VAILKRQLEEKEKLLATEQEDAavaksklrelnKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQAR---MQASYRDHVK 136
Cdd:pfam10174 347 VDALRLRLEEKESFLNKKTKQL-----------QDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKienLQEQLRDKDK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 137 EVQQLQGKIRTLQEQLENgPNTQLARLQQ---ENSILRDALNQATSQVESKQNTELAKLRQElskvNKELVEKSEASRQE 213
Cdd:pfam10174 416 QLAGLKERVKSLQTDSSN-TDTALTTLEEalsEKERIIERLKEQREREDRERLEELESLKKE----NKDLKEKVSALQPE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 214 EQQRKA----LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHanlradaeKAQEQQQRVAELHSKLQS 289
Cdd:pfam10174 491 LTEKESslidLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH--------NAEEAVRTNPEINDRIRL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 290 SEVEVKSKCEE-------LSSLHGQLKEARAENSQLTERIRSIEAL-LEAGQAQDTQASHAEANQQQTRLKELESQVSCL 361
Cdd:pfam10174 563 LEQEVARYKEEsgkaqaeVERLLGILREVENEKNDKDKKIAELESLtLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR 642
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918958 362 EKETSELKEAMEQQKGKNNDLREKNWKAMEA----LALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLA 431
Cdd:pfam10174 643 RREDNLADNSQQLQLEELMGALEKTRQELDAtkarLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLA 716
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
50-374 |
1.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 50 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 129
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 130 SYRDHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNTELAKLRQELSKVNKE 202
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 203 LVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKR----LEEVTRELCRAQTSHANLRADAEKAQEQQQ 278
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 279 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGqaqDTQASHAEANQQQTRLKELESQV 358
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL---DEEELEEELEELEEELEELEEEL 448
|
330
....*....|....*.
gi 568918958 359 SCLEKETSELKEAMEQ 374
Cdd:COG4717 449 EELREELAELEAELEQ 464
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-528 |
1.26e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 235 QASHKESEEALQKRLEEVTRELC---------------------RAQTSHANLRADAEKAQEQQ----QRVAELHSKLQS 289
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSslqselrrienrldelsqelsDASRKIGEIEKEIEQLEQEEeklkERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 290 SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQashAEANQQQTRLKELESQVSCLEKETSELK 369
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ---AELSKLEEEVSRIEARLREIEQKLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 370 EAMEQQKGKNNDLREKNwkamealalaeRACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLpglsisahqNYAEWLQ 449
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQR-----------IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR---------DLESRLG 885
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568918958 450 EFKEKGSELLKkpptlepsmdivlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEEL 528
Cdd:TIGR02169 886 DLKKERDELEA-------------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-715 |
1.39e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 437 SISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIvlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKS------- 509
Cdd:TIGR02169 717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ--EIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsrip 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 510 --------VEEEERVWKAKVGAAEEELHKS-------RVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAAS 574
Cdd:TIGR02169 795 eiqaelskLEEEVSRIEARLREIEQKLNRLtlekeylEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE 874
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 575 AECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMR----------SHVEDGDVAGSPaVPPAEQDP 644
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKaklealeeelSEIEDPKGEDEE-IPEEELSL 953
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568918958 645 MKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAgplessgKEEITQLKERLEKEKR 715
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE-------RKAILERIEEYEKKKR 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
538-756 |
1.71e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 538 LEDIVEKLKGELES----SDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELA 613
Cdd:COG1196 191 LEDILGELERQLEPlerqAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 614 LVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKL---- 689
Cdd:COG1196 271 ELRLELEELELELEE-----------AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeel 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918958 690 -RAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 756
Cdd:COG1196 340 eELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
94-754 |
1.88e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 94 EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPN--TQLARLQQENSILR 171
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 172 DALNQATSQVESKQNTE--LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRL 249
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 250 EEVTRELCRAQTSHANLRADaekAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALL 329
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRD---AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 330 EAGQAQDTQASHAEAnQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKL----R 405
Cdd:TIGR00618 417 SAFRDLQGQLAHAKK-QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlaR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 406 SLTQAKEESEKQLHLAEAQTKETLLALLPGLS------ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMdivlklREAE 479
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQM------QEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 480 ETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVkHLEDIVEKLKGELESSDQVREHT 559
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ-DLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 560 SHLEAELEKHMAAASAECQNYAKEvaglrQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRShVEDGDVAGSPAVPP 639
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPK-----ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRE-LETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 640 AEQDPMKLKTQLERTEATL-----EAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEK 714
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALnqslkELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568918958 715 RLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGK 754
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSA 842
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
545-752 |
2.13e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 545 LKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQ--------SDELALVR 616
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 617 QQLSDMRSHVEDGDvagsPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRT----ACRIQEELEKLRAA 692
Cdd:TIGR02169 308 RSIAEKERELEDAE----ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEledlRAELEEVDKEFAET 383
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 693 GPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQL 752
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
60-610 |
2.56e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 60 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 139
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 140 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNTEL-----AKLRQELS 197
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELcaaaiTCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 198 KVNKELVEKSEASRQEEQQRKALEAKAATfEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQ 277
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQ-ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 278 QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASH---AEANQQQTRLKEL 354
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDlteKLSEAEDMLACEQ 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 355 ESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLP 434
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 435 GLSISAHQNYAEWLQEFKEKGSELLkkpptlepsmdivlkLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEE 514
Cdd:TIGR00618 695 WKEMLAQCQTLLRELETHIEEYDRE---------------FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 515 RVWKAKVGAAEEELHKSRVTVKHLE-DIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLE 593
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQTGAELSHLAaEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEE 839
|
570
....*....|....*..
gi 568918958 594 SQSQLDEAKSEAQKQSD 610
Cdd:TIGR00618 840 KSATLGEITHQLLKYEE 856
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
179-268 |
4.49e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.71 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 179 SQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHkeseEALQKRLEEVTRELcR 258
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL----EQLQEKAAETSQER-K 215
|
90
....*....|
gi 568918958 259 AQTSHANLRA 268
Cdd:PRK11448 216 QKRKEITDQA 225
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
136-427 |
5.42e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 136 KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 215
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQN-NKIISQLNEQISQLKKELTNSESENSEKQR-ELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 216 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTR-------------ELCRAQTSHANLRADAEKAQEQQQR--- 279
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlketiiknnseikDLTNQDSVKELIIKNLDNTRESLETqlk 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 280 -----VAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEalleagqaQDTQASHAEANQQQTRLKEL 354
Cdd:TIGR04523 472 vlsrsINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK--------EKIEKLESEKKEKESKISDL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 355 ESQV---------SCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAE---RACEEKLRSLTQAKEESEKQLHLAE 422
Cdd:TIGR04523 544 EDELnkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEkekKDLIKEIEEKEKKISSLEKELEKAK 623
|
....*
gi 568918958 423 AQTKE 427
Cdd:TIGR04523 624 KENEK 628
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
137-627 |
5.69e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 137 EVQQLQGKIRTLQEQLENGPNT---QLARLQQENSILRDALNQATSQVESKqnteLAKLRQELSKVNKELVEK------- 206
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRMYEDK----IEELEKQLVLANSELTEArterdqf 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 207 SEASRQEEQQRKALEAKAATFEKQVLQLQASHKE----------SEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQ 276
Cdd:pfam15921 369 SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 277 Q-----------QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ-ASHAEA 344
Cdd:pfam15921 449 QmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlRSRVDL 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 345 NQQQTR-LKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQ-AKEESEKQLHLAE 422
Cdd:pfam15921 529 KLQELQhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQE 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 423 aqtketllallpgLSISAHQNYAEwLQEFKEKGSEL-LKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTilaeteg 501
Cdd:pfam15921 609 -------------FKILKDKKDAK-IRELEARVSDLeLEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN------- 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 502 MLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 581
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQ 747
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568918958 582 KEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVE 627
Cdd:pfam15921 748 SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE 793
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
190-323 |
5.97e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 190 AKLRQELSKVNKELVEKSEASRQEEQQRKALEakaatfekqvlqlqashKESEEALQKRLEEVTRELcraqtshANLRAD 269
Cdd:COG0542 400 ARVRMEIDSKPEELDELERRLEQLEIEKEALK-----------------KEQDEASFERLAELRDEL-------AELEEE 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568918958 270 AEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR 323
Cdd:COG0542 456 LEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
140-368 |
6.37e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 140 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNTELAKLRQELSKVNKELVEKSEASRQEE 214
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 215 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRadaekaqEQQQRVAELHSKLQSSEVEV 294
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRK-------EEEAERKQLQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918958 295 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ--ASHAEANQQQTRLKELESQVSCLEKETSEL 368
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneALLEELRSLQERLNASERKVEGLGEELSSM 263
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
63-427 |
7.86e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 63 LKRQLEEKEKLLATEQEDAAVAKSKLRELnkEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQAsYRDHVKEVQQLQ 142
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 143 GKIRTLQEQLENGPNT-------QLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 215
Cdd:COG4717 170 AELAELQEELEELLEQlslateeELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 216 QRK--------ALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKL 287
Cdd:COG4717 249 RLLlliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 288 QSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR------SIEALLEAGQAQDTQA------SHAEANQQQTRLKELE 355
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqEIAALLAEAGVEDEEElraaleQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918958 356 SQvscLEKETSELKEAMEQQKGKNNDLR-EKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 427
Cdd:COG4717 409 EQ---LEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
159-427 |
8.95e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 39.77 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 159 QLARLQQENSILRDALNQATSQV--ESKQNTELAKLRQELSKVNKELVE---KSEASRQE-EQQRKALEAKAATFEKQVL 232
Cdd:pfam01576 146 QNSKLSKERKLLEERISEFTSNLaeEEEKAKSLSKLKNKHEAMISDLEErlkKEEKGRQElEKAKRKLEGESTDLQEQIA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 233 QLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS-------SEVEVKSKCEELSSLH 305
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraarnkAEKQRRDLGEELEALK 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 306 GQLKEA-RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvsclekeTSELKEAMEQQKgKNNDLRE 384
Cdd:pfam01576 306 TELEDTlDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQA--------LEELTEQLEQAK-RNKANLE 376
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568918958 385 KNWKAMEAlALAERACEekLRSLTQAKEESEKQLHLAEAQTKE 427
Cdd:pfam01576 377 KAKQALES-ENAELQAE--LRTLQQAKQDSEHKRKKLEGQLQE 416
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
188-515 |
9.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 188 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQlqaSHKESEEALQKRLEEVTRELCRAQtshanlr 267
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAE------- 907
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 268 aDAEKAQEQQQRVAELHSKLQSSeveVKSKCEELSSLHGQLKEARAENSQLTERIRSIealleagqaqdtqashAEANQQ 347
Cdd:PRK04863 908 -EAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFAL----------------TEVVQR 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 348 QTRLKELESQVscLEKETSELKEAMEQQkgknndlreknwkameaLALAERACEEKLRSLTQAKEESekqlhlaeAQTKE 427
Cdd:PRK04863 968 RAHFSYEDAAE--MLAKNSDLNEKLRQR-----------------LEQAEQERTRAREQLRQAQAQL--------AQYNQ 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 428 TLLALlpglsISAHQNYAEWLQEFKEkgsELLKKPPTLEPSMDIVLKLREaEETQNSL---QAECDQYRTILAETEGMLK 504
Cdd:PRK04863 1021 VLASL-----KSSYDAKRQMLQELKQ---ELQDLGVPADSGAEERARARR-DELHARLsanRSRRNQLEKQLTFCEAEMD 1091
|
330
....*....|.
gi 568918958 505 DLQKSVEEEER 515
Cdd:PRK04863 1092 NLTKKLRKLER 1102
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
280-564 |
9.45e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.53 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 280 VAELHsklQSSEVEVKSKCEELSSL-HGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAE----ANQQQTRLKEL 354
Cdd:PRK05771 22 LEALH---ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSleelIKDVEEELEKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 355 ESQVSCLEKETSELKEAMEqqkgknnDLREKnwkaMEALalaeraceEKLRSLTqakeesekqLHLAEAQTKETLLALLP 434
Cdd:PRK05771 99 EKEIKELEEEISELENEIK-------ELEQE----IERL--------EPWGNFD---------LDLSLLLGFKYVSVFVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 435 GLSisaHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKlrEAEETQNSLQAECDqYRTILAETEGMLKDLQKSVEEEE 514
Cdd:PRK05771 151 TVP---EDKLEELKLESDVENVEYISTDKGYVYVVVVVLK--ELSDEVEEELKKLG-FERLELEEEGTPSELIREIKEEL 224
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568918958 515 RVWKAKVGAAEEELhkSRVTVKHLEDIV--------EKLKGELESSDQVREHTSHLEA 564
Cdd:PRK05771 225 EEIEKERESLLEEL--KELAKKYLEELLalyeyleiELERAEALSKFLKTDKTFAIEG 280
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
265-757 |
9.90e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.28 E-value: 9.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 265 NLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEA 344
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 345 NqqqtrLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALaeracEEKLRSLTQAKEESEKQLHLAEAQ 424
Cdd:PRK03918 253 S-----KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL-----SEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 425 TKETLLallpglSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRtiLAETEGMLK 504
Cdd:PRK03918 323 INGIEE------RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 505 DLQKS---VEEEERVWKAKVGAAEEElhksrvtVKHLEDIVEKLKG-ELESSDQVREHTSHLEAELekhMAAASAECQNY 580
Cdd:PRK03918 395 ELEKAkeeIEEEISKITARIGELKKE-------IKELKKAIEELKKaKGKCPVCGRELTEEHRKEL---LEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 581 AKEVAGLRQLLLESQSQLDEAKSEAQKQSdELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEA---T 657
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGeikS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918958 658 LEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRaaGPLESSGKEEITQLKERLEKEKRLTSDLGRaaiklqelLKTTQEQ 737
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELL--KELEELGFESVEELEERLKELEPFYNEYLE--------LKDAEKE 613
|
490 500
....*....|....*....|
gi 568918958 738 LTKEKDTVKKLQEQLGKAED 757
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFE 633
|
|
| |
