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Conserved domains on  [gi|339243779|ref|XP_003377815|]
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putative CUT domain protein [Trichinella spiralis]

Protein Classification

CUT and homeodomain domain-containing protein( domain architecture ID 11131078)

CUT and homeodomain domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 312-385 9.06e-26

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


:

Pssm-ID: 460543  Cd Length: 78  Bit Score: 101.13  E-value: 9.06e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  312 INTEKLVQRVKEHLLQYSISQRVFGEQVLGLSQGSVSDLLARPKAWHMLTQKGREpFIRMHAFLEDNELLKKLI 385
Cdd:pfam02376   5 LDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERMEI 77
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 29-104 4.99e-21

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


:

Pssm-ID: 460543  Cd Length: 78  Bit Score: 87.65  E-value: 4.99e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779   29 DEPLDTAEIARQCRRVLTEHNIGQRLIAKYVLNQSQGAVSELLSKPKKWSSLTERSKNsFRRLKAWLGDQRAVLAL 104
Cdd:pfam02376   2 SEELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERME 76
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 445-518 1.22e-20

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


:

Pssm-ID: 460543  Cd Length: 78  Bit Score: 86.49  E-value: 1.22e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  445 VPLDTVAIVEETRAVLAAHSIGQKLFGEAVLHLSQGFVSDLLSKPKPWEALSAKRKEaLLRMQAWLKDADRIKK 518
Cdd:pfam02376   3 EELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERM 75
Homeodomain pfam00046
Homeodomain;
555-610 2.82e-16

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 73.30  E-value: 2.82e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779  555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
 
Name Accession Description Interval E-value
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 312-385 9.06e-26

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 101.13  E-value: 9.06e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  312 INTEKLVQRVKEHLLQYSISQRVFGEQVLGLSQGSVSDLLARPKAWHMLTQKGREpFIRMHAFLEDNELLKKLI 385
Cdd:pfam02376   5 LDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERMEI 77
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 29-104 4.99e-21

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 87.65  E-value: 4.99e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779   29 DEPLDTAEIARQCRRVLTEHNIGQRLIAKYVLNQSQGAVSELLSKPKKWSSLTERSKNsFRRLKAWLGDQRAVLAL 104
Cdd:pfam02376   2 SEELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERME 76
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 445-518 1.22e-20

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 86.49  E-value: 1.22e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  445 VPLDTVAIVEETRAVLAAHSIGQKLFGEAVLHLSQGFVSDLLSKPKPWEALSAKRKEaLLRMQAWLKDADRIKK 518
Cdd:pfam02376   3 EELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERM 75
Homeodomain pfam00046
Homeodomain;
555-610 2.82e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 73.30  E-value: 2.82e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779  555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 555-610 1.73e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 1.73e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779   555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 555-610 1.41e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 68.42  E-value: 1.41e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779 555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
555-621 1.02e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 48.97  E-value: 1.02e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 339243779 555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRrmRQKAALQQSTAVAD 621
Cdd:COG5576   52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNK--RAKEKKKRSGKVEQ 116
 
Name Accession Description Interval E-value
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 312-385 9.06e-26

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 101.13  E-value: 9.06e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  312 INTEKLVQRVKEHLLQYSISQRVFGEQVLGLSQGSVSDLLARPKAWHMLTQKGREpFIRMHAFLEDNELLKKLI 385
Cdd:pfam02376   5 LDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERMEI 77
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 29-104 4.99e-21

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 87.65  E-value: 4.99e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779   29 DEPLDTAEIARQCRRVLTEHNIGQRLIAKYVLNQSQGAVSELLSKPKKWSSLTERSKNsFRRLKAWLGDQRAVLAL 104
Cdd:pfam02376   2 SEELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERME 76
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 445-518 1.22e-20

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 86.49  E-value: 1.22e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339243779  445 VPLDTVAIVEETRAVLAAHSIGQKLFGEAVLHLSQGFVSDLLSKPKPWEALSAKRKEaLLRMQAWLKDADRIKK 518
Cdd:pfam02376   3 EELDTKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRKPKPWEKLKSGGRT-FIRMYNWLSLPEDERM 75
Homeodomain pfam00046
Homeodomain;
555-610 2.82e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 73.30  E-value: 2.82e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779  555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 555-610 1.73e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 1.73e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779   555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 555-610 1.41e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 68.42  E-value: 1.41e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 339243779 555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRRMRQK 610
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
555-621 1.02e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 48.97  E-value: 1.02e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 339243779 555 KRPRVTLTKAQKEQLIEAFNREPYPSVQMTSHLSVRLGLHVSTVANWFQNRrmRQKAALQQSTAVAD 621
Cdd:COG5576   52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNK--RAKEKKKRSGKVEQ 116
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 577-608 1.44e-03

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 36.72  E-value: 1.44e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 339243779  577 PYPSVQMTSHLSVRLGLHVSTVANWFQNRRMR 608
Cdd:pfam05920   8 PYPSEEEKAELAKETGLSRKQISNWFINARRR 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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