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Conserved domains on  [gi|503715001|ref|WP_013949077|]
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YscO family type III secretion system apparatus protein [Hyphomicrobium sp. MC1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YscO super family cl25506
Type III secretion protein YscO; This family contains the bacterial type III secretion protein ...
 6-139 3.05e-18

Type III secretion protein YscO; This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis.


The actual alignment was detected with superfamily member pfam07321:

Pssm-ID: 399954 [Multi-domain]  Cd Length: 148  Bit Score: 76.67  E-value: 3.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503715001    6 IRQVQRVKVLQADRAEQEERARRAGLEAAAAAVETARANLERWREEMPRREAAIYDAIIGKLVDLEALDACKARVVELRE 85
Cdd:pfam07321   1 IRRLLRVKHLREDRAEKAVKRQEQALAAARAAHQQAQASLQDYRAWRPQEEQRLYAEIQGKLVLLKELEKVKQQVALLRE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 503715001   86 HEALLAKRLQDAEGAATAAREALEFASQKLAHARRAVSKFDELVATLRAAELLD 139
Cdd:pfam07321  81 NEADLEKQVAEARQQLEAEREALRQARQALAEARRAVEKFAELVRLVQAEELRQ 134
 
Name Accession Description Interval E-value
YscO pfam07321
Type III secretion protein YscO; This family contains the bacterial type III secretion protein ...
 6-139 3.05e-18

Type III secretion protein YscO; This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis.


Pssm-ID: 399954 [Multi-domain]  Cd Length: 148  Bit Score: 76.67  E-value: 3.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503715001    6 IRQVQRVKVLQADRAEQEERARRAGLEAAAAAVETARANLERWREEMPRREAAIYDAIIGKLVDLEALDACKARVVELRE 85
Cdd:pfam07321   1 IRRLLRVKHLREDRAEKAVKRQEQALAAARAAHQQAQASLQDYRAWRPQEEQRLYAEIQGKLVLLKELEKVKQQVALLRE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 503715001   86 HEALLAKRLQDAEGAATAAREALEFASQKLAHARRAVSKFDELVATLRAAELLD 139
Cdd:pfam07321  81 NEADLEKQVAEARQQLEAEREALRQARQALAEARRAVEKFAELVRLVQAEELRQ 134
 
Name Accession Description Interval E-value
YscO pfam07321
Type III secretion protein YscO; This family contains the bacterial type III secretion protein ...
 6-139 3.05e-18

Type III secretion protein YscO; This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis.


Pssm-ID: 399954 [Multi-domain]  Cd Length: 148  Bit Score: 76.67  E-value: 3.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503715001    6 IRQVQRVKVLQADRAEQEERARRAGLEAAAAAVETARANLERWREEMPRREAAIYDAIIGKLVDLEALDACKARVVELRE 85
Cdd:pfam07321   1 IRRLLRVKHLREDRAEKAVKRQEQALAAARAAHQQAQASLQDYRAWRPQEEQRLYAEIQGKLVLLKELEKVKQQVALLRE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 503715001   86 HEALLAKRLQDAEGAATAAREALEFASQKLAHARRAVSKFDELVATLRAAELLD 139
Cdd:pfam07321  81 NEADLEKQVAEARQQLEAEREALRQARQALAEARRAVEKFAELVRLVQAEELRQ 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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