NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|501423374|ref|WP_012448044|]
View 

tetratricopeptide repeat protein [Natranaerobius thermophilus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-347 1.48e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 1.48e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 171 VSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPD 250
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD---AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 IYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQ 330
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALEL--DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                        170
                 ....*....|....*..
gi 501423374 331 LKQEQYLAAKEYERAKQ 347
Cdd:COG0457  156 KLGRYEEALELLEKLEA 172
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-347 1.48e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 1.48e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 171 VSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPD 250
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD---AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 IYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQ 330
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALEL--DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                        170
                 ....*....|....*..
gi 501423374 331 LKQEQYLAAKEYERAKQ 347
Cdd:COG0457  156 KLGRYEEALELLEKLEA 172
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 78-350 3.61e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.25  E-value: 3.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374   78 LISAYLGISNEEVSNLELLNSFSKSTEEYDEELvdklssmkEAYR-----NKDHEKNHSNEVNS--EQNKD--------- 141
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELAL--------AAYRkaialRPNNIAVLLALATIliEAGEFeeaekhada 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  142 ------NKSIHSFRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDE---- 211
Cdd:TIGR02917 253 llkkapNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNShqar 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  212 EILALAYNAIGNIyvdkeeqEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLYI 291
Cdd:TIGR02917 333 RLLASIQLRLGRV-------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  292 GK------------------------------AYTYL--GDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAA 339
Cdd:TIGR02917 406 SKlsqgdpseaiadletaaqldpelgradlllILSYLrsGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485

                         330
                  ....*....|.
gi 501423374  340 KEYERAKQLSQ 350
Cdd:TIGR02917 486 EAFEKALSIEP 496
TPR_11 pfam13414
TPR repeat;
222-263 2.46e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 49.39  E-value: 2.46e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 501423374  222 GNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLG 263
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 285-318 3.00e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 3.00e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 501423374   285 WELHLYIGKAYTYLGDLDKALKHLKKALRIEPKN 318
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 258-319 3.11e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 3.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501423374 258 IYFNLGDFLQSVKYFQKALQITSNNSD-WELhlyIGKAYTYLGDLDKALKHLKKALRIEPKNE 319
Cdd:cd24142    9 ELLDQGNFELALKFLQRALELEPNNVEaLEL---LGEILLELGDVEEAREVLLRAIELDPDGG 68
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 251-354 3.51e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 37.73  E-value: 3.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 IYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLY-IGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIY 329
Cdd:PRK02603  37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYnMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116

                         90       100
                 ....*....|....*....|....*
gi 501423374 330 QLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAE 141
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-347 1.48e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 1.48e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 171 VSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPD 250
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD---AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 IYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQ 330
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALEL--DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                        170
                 ....*....|....*..
gi 501423374 331 LKQEQYLAAKEYERAKQ 347
Cdd:COG0457  156 KLGRYEEALELLEKLEA 172
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 144-348 2.11e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.88  E-value: 2.11e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 144 SIHSFRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRlvvELVEDEEILALAYNAIGN 223
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ---KLLERDPDRAEALLELAQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 224 IYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSdwELHLYIGKAYTYLGDLDK 303
Cdd:COG2956   85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA--HAYCELAELYLEQGDYDE 162

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 501423374 304 ALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQL 348
Cdd:COG2956  163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 160-348 2.52e-21

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.06  E-value: 2.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 160 LEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAI------GNIYVDKEEQEK 233
Cdd:COG3914   17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaALLLQALGRYEE 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 234 ALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALR 313
Cdd:COG3914   97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL--NPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 501423374 314 IEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQL 348
Cdd:COG3914  175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
148-355 7.57e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.07  E-value: 7.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 148 FRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDeeiLALAYNAIGNIYVD 227
Cdd:COG0457   12 NNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD---DAEALNNLGLALQA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 228 KEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKH 307
Cdd:COG0457   89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL--DPDDADALYNLGIALEKLGRYEEALEL 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 501423374 308 LKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQKKSEQ 355
Cdd:COG0457  167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 157-354 3.81e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.51  E-value: 3.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 157 LAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALT 236
Cdd:COG3914   57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN---AEALFNLGNLLLALGRLEEALA 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 237 NYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNsdWELHLYIGKAYTYLGDLDKALKHLKKALRIEP 316
Cdd:COG3914  134 ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN--AEALNNLGNALQDLGRLEEAIAAYRRALELDP 211

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 501423374 317 KNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG3914  212 DNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSE 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
214-348 1.52e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.90  E-value: 1.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 214 LALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGK 293
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDDAEALNNLGL 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 501423374 294 AYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQL 348
Cdd:COG0457   85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 137-345 2.05e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.93  E-value: 2.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 137 EQNKDNKSIHsFRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRlvvELVEDEEILAL 216
Cdd:COG2956   70 ERDPDRAEAL-LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE---RLLKLGPENAH 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 217 AYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSdwELHLYIGKAYT 296
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL--PALPRLAELYE 223

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 501423374 297 YLGDLDKALKHLKKALRIEPKNEEiHFELGLIYQLKQEQYLAAKEYERA 345
Cdd:COG2956  224 KLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 215-351 9.24e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 76.00  E-value: 9.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 215 ALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKA 294
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--DPDEPEARLNLGLA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 501423374 295 YTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQK 351
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-318 2.41e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 74.84  E-value: 2.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 181 HYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYF 260
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDN---PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 501423374 261 NLGDFLQSVKYFQKALQITSNnsDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKN 318
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPE--HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 249-354 1.21e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 72.73  E-value: 1.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 249 PDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDweLHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLI 328
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD--ALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                         90       100
                 ....*....|....*....|....*.
gi 501423374 329 YQLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG4235   95 AFQQGDYAEAIAAWQKLLALLPADAP 120
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 146-289 4.00e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.57  E-value: 4.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 146 HSFRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDeeiLALAYNAIGNIY 225
Cdd:COG3914   80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD---FAEAYLNLGEAL 156

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501423374 226 VDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHL 289
Cdd:COG3914  157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
148-350 4.99e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.81  E-value: 4.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 148 FRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDeeiLALAYNAIGNIYVD 227
Cdd:COG0457   46 YNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---DAEALYNLGLALLE 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 228 KEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLYIGKAYTYLGDLDKALKH 307
Cdd:COG0457  123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 501423374 308 LKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQ 350
Cdd:COG0457  203 LEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 148-282 5.20e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.29  E-value: 5.20e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 148 FRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVD 227
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE---PEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 501423374 228 KEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNN 282
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 222-354 1.64e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 69.76  E-value: 1.64e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 222 GNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSdwELHLYIGKAYTYLGDL 301
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA--EALLELAQDYLKAGLL 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 501423374 302 DKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG2956   93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
187-354 3.42e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 3.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 187 AYFYKSEYDKALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFpDIYFNCGAIYFNLGDFL 266
Cdd:COG4785   12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA-QLYYERGVAYDSLGDYD 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 267 QSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAK 346
Cdd:COG4785   91 LAIADFDQALEL--DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168


                 ....*...
gi 501423374 347 QLSQKKSE 354
Cdd:COG4785  169 ELDPNDPE 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 162-287 5.33e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.41  E-value: 5.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 162 EAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALTNYLRA 241
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELLERA 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 501423374 242 CDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWEL 287
Cdd:COG4235   78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
175-313 5.53e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.63  E-value: 5.53e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 175 PNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDeeiLALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFN 254
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD---LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501423374 255 CGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLYI------------------GKAYTYLGDLDKALKHLKKALR 313
Cdd:COG4785  147 RGIALYYLGRYELAIADLEKALELDPNDPERALWLYLaerkldpekalallledwATAYLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 179-348 7.25e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 7.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 179 MGHYFLGLAYFYKSEYDKALkkfRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPD-------- 250
Cdd:COG3914    2 AAAALLALAALAAAALLAAA---AAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAaaalllla 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 -IYFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIY 329
Cdd:COG3914   79 aLLELAALLLQALGRYEEALALYRRALAL--NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                        170       180
                 ....*....|....*....|
gi 501423374 330 QlKQEQYLAAKE-YERAKQL 348
Cdd:COG3914  157 R-RLGRLEEAIAaLRRALEL 175
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 196-349 9.54e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.37  E-value: 9.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 196 KALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKA 275
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501423374 276 LQITSNNsdWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLS 349
Cdd:COG5010   81 LQLDPNN--PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
214-348 1.05e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.48  E-value: 1.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 214 LALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLyiGK 293
Cdd:COG4785   72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR--GI 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501423374 294 AYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLK-------------QEQYLAAKEYERAKQL 348
Cdd:COG4785  150 ALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLdpekalallledwATAYLLQGDTEEAREL 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 184-316 9.34e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.67  E-value: 9.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 184 LGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLG 263
Cdd:COG5010   23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 501423374 264 DFLQSVKYFQKALQITSNNSDWELHLyiGKAYTYLGDLDKALKHLKKALRIEP 316
Cdd:COG5010  103 DKDEAKEYYEKALALSPDNPNAYSNL--AALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
258-349 7.49e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.26  E-value: 7.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 258 IYFNLGDFLQSVKYFQKALQITSNNSDweLHLYIGKAYTYLGDLDKALKhLKKALRIEPKNEEIHFELGLIYQLKQEQYL 337
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNAD--ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77

                         90
                 ....*....|..
gi 501423374 338 AAKEYERAKQLS 349
Cdd:COG3063   78 ALAYLERALELD 89
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 137-305 2.99e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 2.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 137 EQNKDNKSIHSFRKGL--------GYFNLA-------MLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKF 201
Cdd:COG3914   90 ALGRYEEALALYRRALalnpdnaeALFNLGnlllalgRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 202 RLVVELVEDeeiLALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFlQSVKYFQKALQITSN 281
Cdd:COG3914  170 RRALELDPD---NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDW-EVYDRFEELLAALAR 245

                        170       180
                 ....*....|....*....|....
gi 501423374 282 NSDWELHLYIgkayTYLGDLDKAL 305
Cdd:COG3914  246 GPSELSPFAL----LYLPDDDPAE 265
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 78-350 3.61e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.25  E-value: 3.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374   78 LISAYLGISNEEVSNLELLNSFSKSTEEYDEELvdklssmkEAYR-----NKDHEKNHSNEVNS--EQNKD--------- 141
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELAL--------AAYRkaialRPNNIAVLLALATIliEAGEFeeaekhada 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  142 ------NKSIHSFRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDE---- 211
Cdd:TIGR02917 253 llkkapNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNShqar 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  212 EILALAYNAIGNIyvdkeeqEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLYI 291
Cdd:TIGR02917 333 RLLASIQLRLGRV-------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  292 GK------------------------------AYTYL--GDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAA 339
Cdd:TIGR02917 406 SKlsqgdpseaiadletaaqldpelgradlllILSYLrsGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485

                         330
                  ....*....|.
gi 501423374  340 KEYERAKQLSQ 350
Cdd:TIGR02917 486 EAFEKALSIEP 496
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-354 7.70e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 7.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 252 YFNCGAIYFNLGDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQL 331
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALEL--DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                         90       100
                 ....*....|....*....|...
gi 501423374 332 KQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG2956   89 AGLLDRAEELLEKLLELDPDDAE 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 267-348 9.79e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 9.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 267 QSVKYFQKALQITSNNSdwELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAK 346
Cdd:COG4235    1 EAIARLRQALAANPNDA--EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78


                 ..
gi 501423374 347 QL 348
Cdd:COG4235   79 AL 80
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 150-351 9.90e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.02  E-value: 9.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  150 KGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDeeiLALAYNAIGNIYVDKE 229
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD---NTEAQIGLAQLLLAAK 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  230 EQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSdweLHLYIGKAYTYLGDLDKALKHLK 309
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHRALLASGNTAEAVKTLE 760

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 501423374  310 KALRIEPKNEEIHFELGLIYqLKQEQYL-AAKEYERAKQLSQK 351
Cdd:TIGR02917 761 AWLKTHPNDAVLRTALAELY-LAQKDYDkAIKHYQTVVKKAPD 802
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 114-348 1.76e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 1.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  114 LSSMKEAY-RNKDHEKNHSN-EVNSEQNKDNKSIHSfRKGLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYK 191
Cdd:TIGR02917 366 LSLLGEAYlALGDFEKAAEYlAKATELDPENAAART-QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  192 SEYDKALKKFRlvvELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKY 271
Cdd:TIGR02917 445 GQFDKALAAAK---KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  272 FQKALQITSNN-------------------------------------------------------------SDW----- 285
Cdd:TIGR02917 522 FEKVLTIDPKNlrailalaglylrtgneeeavawlekaaelnpqeiepalalaqyylgkgqlkkalailneaADAapdsp 601

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501423374  286 ELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQL 348
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
TPR_11 pfam13414
TPR repeat;
222-263 2.46e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 49.39  E-value: 2.46e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 501423374  222 GNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLG 263
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
224-317 2.94e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 2.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 224 IYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKyFQKALQItsNNSDWELHLYIGKAYTYLGDLDK 303
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--DPNNAEALLNLAELLLELGDYDE 77

                         90
                 ....*....|....
gi 501423374 304 ALKHLKKALRIEPK 317
Cdd:COG3063   78 ALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 139-355 3.45e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.09  E-value: 3.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  139 NKDNKSIHSFRKGL--------GYFNLAML-------EEAKNEFEQVVSEEPNMIMGHyfLGLAYFY--KSEYDKALKKF 201
Cdd:TIGR02917 479 GDLAKAREAFEKALsiepdffpAAANLARIdiqegnpDDAIQRFEKVLTIDPKNLRAI--LALAGLYlrTGNEEEAVAWL 556

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  202 RLVVELVEDEEILALAynaIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSN 281
Cdd:TIGR02917 557 EKAAELNPQEIEPALA---LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501423374  282 NSdwELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYqlkqeqyLAAKEYERAKQLSQKKSEQ 355
Cdd:TIGR02917 634 SA--LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL-------LAAKRTESAKKIAKSLQKQ 698
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 162-312 8.26e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 8.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  162 EAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVdKEEQEKALTNYLRA 241
Cdd:TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN---AVVLNNLAWLYL-ELKDPRALEYAERA 829

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501423374  242 CDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLyiGKAYTYLGDLDKALKHLKKAL 312
Cdd:TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKELDKLL 898
TPR_11 pfam13414
TPR repeat;
292-333 1.14e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.47  E-value: 1.14e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 501423374  292 GKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQ 333
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 186-277 2.40e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 2.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 186 LAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRAC-DYTESF--PDIYFNCGAIYFNL 262
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLkRYPDSPkaPDALLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 501423374 263 GDFLQSVKYFQKALQ 277
Cdd:COG1729   81 GDYDKARATLEELIK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
294-354 3.25e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 3.25e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501423374 294 AYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYqLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL-LEQGRYDEAIALEKALKLDPNNAE 60
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 157-278 5.58e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 5.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 157 LAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALT 236
Cdd:COG5010   33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN---PELYYNLALLYSRSGDKDEAKE 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 501423374 237 NYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQI 278
Cdd:COG5010  110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
187-279 5.95e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 5.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 187 AYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEKALtNYLRACDYTESFPDIYFNCGAIYFNLGDFL 266
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDN---ADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76

                         90
                 ....*....|...
gi 501423374 267 QSVKYFQKALQIT 279
Cdd:COG3063   77 EALAYLERALELD 89
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 290-351 1.19e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 48.87  E-value: 1.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501423374  290 YIGKAYTYL--GDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQK 351
Cdd:TIGR02521  34 RVQLALGYLeqGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 227-320 1.53e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.52  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 227 DKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDW-ELHLYIGKAYTYLGDLDKAL 305
Cdd:COG1729    8 DYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApDALLKLGLSYLELGDYDKAR 87

                         90
                 ....*....|....*
gi 501423374 306 KHLKKALRIEPKNEE 320
Cdd:COG1729   88 ATLEELIKKYPDSEA 102
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 151-337 1.56e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.08  E-value: 1.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  151 GLGYFNLAMLEEAKNEFEQVVSEEPNMIMGHyfLGLAYFYKSE--YDKALKkfrLVVELVEDEEILALAYNAIGNIYVDK 228
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAK--LGLAQLALAEnrFDEARA---LIDEVLTADPGNVDALLLKGDLLLSL 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  229 EEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSdwELHLYIGKAYTYLGDLDKALKHL 308
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP--LAHYLKALVDFQKKNYEDARETL 284

                         170       180       190
                  ....*....|....*....|....*....|....
gi 501423374  309 KKALRIEPKNEEIHFELGLI-YQLKQ----EQYL 337
Cdd:TIGR02917 285 QDALKSAPEYLPALLLAGASeYQLGNleqaYQYL 318
TPR_12 pfam13424
Tetratricopeptide repeat;
251-314 2.17e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 2.17e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  251 IYFNCGAIYFNLGDFLQSVKYFQKALQITS----NNSDWELHLY--IGKAYTYLGDLDKALKHLKKALRI 314
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgPDHPLTATTLlnLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 154-347 2.74e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 2.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  154 YFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYnaIGNIYVDKEEQEK 233
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLAL--RGLAYLGLGQLEL 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  234 ALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDweLHLYIGKAYTYLGDLDKALKHLKKALR 313
Cdd:TIGR02917 144 AQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD--ALLLKGDLLLSLGNIELALAAYRKAIA 221

                         170       180       190
                  ....*....|....*....|....*....|....
gi 501423374  314 IEPKNEEIHFELGLIyqlkqeqYLAAKEYERAKQ 347
Cdd:TIGR02917 222 LRPNNIAVLLALATI-------LIEAGEFEEAEK 248
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 194-326 6.07e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.06  E-value: 6.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  194 YDKALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTNYLRACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQ 273
Cdd:TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 501423374  274 KALQITSNNSDWELHLyiGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELG 326
Cdd:TIGR00990 390 KALKLNSEDPDIYYHR--AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 154-221 1.53e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 1.53e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501423374 154 YFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAI 221
Cdd:COG4235   61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 286-354 3.81e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 3.81e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501423374 286 ELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE 73
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 261-351 4.49e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.90  E-value: 4.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 261 NLGDFLQSVKYFQKALQITSNNSDweLHLYIGKAYTYLGDLDKALKHLKKALRIEPkNEEIHFELGLIY-QLKQEQyLAA 339
Cdd:COG3071  236 QGGDPAKQLKRAEKWLKKHPNDPD--LLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLeQLGDPE-EAA 311

                         90
                 ....*....|..
gi 501423374 340 KEYERAKQLSQK 351
Cdd:COG3071  312 EHYRKALALALG 323
TPR_14 pfam13428
Tetratricopeptide repeat;
285-328 9.43e-05

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 39.33  E-value: 9.43e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 501423374  285 WELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLI 328
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
154-241 9.44e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 9.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 154 YFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALkKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEK 233
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNN---AEALLNLAELLLELGDYDE 77


                 ....*...
gi 501423374 234 ALTNYLRA 241
Cdd:COG3063   78 ALAYLERA 85
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 160-351 1.16e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  160 LEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEEI---LALAYNAIGNiyvdKEEQEKALT 236
Cdd:TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNaikLHRALLASGN----TAEAVKTLE 760

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  237 NYLRacDYTESFPdIYFNCGAIYFNLGDFLQSVKYFQKALQI------TSNNSDWELH--------LYIGKAY------- 295
Cdd:TIGR02917 761 AWLK--THPNDAV-LRTALAELYLAQKDYDKAIKHYQTVVKKapdnavVLNNLAWLYLelkdpralEYAERALklapnip 837

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501423374  296 ----TY------LGDLDKALKHLKKALRIEPKNEEIHFELGLIyqlkqeqYLAAKEYERAKQLSQK 351
Cdd:TIGR02917 838 aildTLgwllveKGEADRALPLLRKAVNIAPEAAAIRYHLALA-------LLATGRKAEARKELDK 896
TPR_1 pfam00515
Tetratricopeptide repeat;
286-318 1.80e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 1.80e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 501423374  286 ELHLYIGKAYTYLGDLDKALKHLKKALRIEPKN 318
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 161-238 1.90e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 161 EEAKNEFEQVVSEEPN---MIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAIGNIYVDKEEQEKALTN 237
Cdd:COG1729   10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89


                 .
gi 501423374 238 Y 238
Cdd:COG1729   90 L 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 286-348 1.94e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 1.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501423374  286 ELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYqLKQEQYLAA-KEYERAKQL 348
Cdd:TIGR02917  23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIY-LALGDYAAAeKELRKALSL 85
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 285-318 3.00e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 3.00e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 501423374   285 WELHLYIGKAYTYLGDLDKALKHLKKALRIEPKN 318
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 161-354 3.18e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.66  E-value: 3.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  161 EEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELveDEEILaLAYNAIGNIYVDKEEQEKALTNYLR 240
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFI-FSHIQLGVTQYKEGSIASSMATFRR 458

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  241 ACDYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHL--YIGKA---YTYLGDLDKALKHLKKALRIE 315
Cdd:TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVlpLINKAlalFQWKQDFIEAENLCEKALIID 538

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 501423374  316 PKNEEIHFELGLIyQLKQEQYLAA-KEYERAKQLSQKKSE 354
Cdd:TIGR00990 539 PECDIAVATMAQL-LLQQGDVDEAlKLFERAAELARTEGE 577
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 154-241 3.95e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 3.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 154 YFNLAMLEEAKNEFEQVVSEEPNMIMGHYFLGLAYFYKSEYDKALKKFRLVVELVEDEeilALAYNAIGNIYVDKEEQEK 233
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN---PNAYSNLAALLLSLGQDDE 140


                 ....*...
gi 501423374 234 ALTNYLRA 241
Cdd:COG5010  141 AKAALQRA 148
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 214-342 3.98e-04

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 41.17  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  214 LALAYNAIGNIYVDKEEQEKALTnylracdYTESFPDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSD------W-- 285
Cdd:TIGR02521  37 LALGYLEQGDLEVAKENLDKALE-------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDvlnnygTfl 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  286 -----------------ELHLY---------IGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYqLKQEQYLAA 339
Cdd:TIGR02521 110 cqqgkyeqamqqfeqaiEDPLYpqparslenAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY-YLRGQYKDA 188


                  ...
gi 501423374  340 KEY 342
Cdd:TIGR02521 189 RAY 191
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 258-355 4.23e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.91  E-value: 4.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  258 IYFNLGDFLQSVKYFQKALQITSNN---SDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQL-KQ 333
Cdd:pfam17874  10 LAISKGDAERALELAEQALALLPEDdllARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQgEI 89

                          90       100
                  ....*....|....*....|....*..
gi 501423374  334 EQ-----YLAAKEYERAKQLSQKKSEQ 355
Cdd:pfam17874  90 LRaqgrlHQALETYQQALQLARDHGLQ 116
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 285-317 9.08e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 9.08e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 501423374  285 WELHLYIGKAYTYLGDLDKALKHLKKALRIEPK 317
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_19 pfam14559
Tetratricopeptide repeat;
299-348 9.71e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 9.71e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 501423374  299 GDLDKALKHLKKALRIEPKNEEIHFELGLIyqlkqeqYLAAKEYERAKQL 348
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEA-------LLALGRLDEAEAL 44
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 294-348 2.13e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 38.05  E-value: 2.13e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 501423374   294 AYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIYQLKQEQYLAAKEYERAKQL 348
Cdd:smart01043  70 ALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 249-282 2.23e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 2.23e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 501423374   249 PDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNN 282
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 258-319 3.11e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 3.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501423374 258 IYFNLGDFLQSVKYFQKALQITSNNSD-WELhlyIGKAYTYLGDLDKALKHLKKALRIEPKNE 319
Cdd:cd24142    9 ELLDQGNFELALKFLQRALELEPNNVEaLEL---LGEILLELGDVEEAREVLLRAIELDPDGG 68
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 181-313 3.20e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 38.83  E-value: 3.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  181 HYFLGLAYFYKSEYDKALKKFRLVVELVEDEEILALAYNAI---GNIYVDKEEQEKALTNYLRACDYT-----ESFP--- 249
Cdd:pfam17874  43 TFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALlqqGEILRAQGRLHQALETYQQALQLArdhglQHLPlhg 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501423374  250 DIYFNCGAIYFNLGDFLQSVKYFQKALQITSN-NSDWELHLYIGKAYTYL--GDLDKALKHLKKALR 313
Cdd:pfam17874 123 FLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQwEPDAAVDAYVLLARIALaqGELEEALTLLRRAEL 189
TPR_1 pfam00515
Tetratricopeptide repeat;
249-282 3.33e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 3.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 501423374  249 PDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNN 282
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
263-322 3.39e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 3.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374  263 GDFLQSVKYFQKALQItsNNSDWELHLYIGKAYTYLGDLDKALKHLKKALRIEPKNEEIH 322
Cdd:pfam14559   2 GDYAEALELLEQALAE--DPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 251-354 3.51e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 37.73  E-value: 3.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501423374 251 IYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWELHLY-IGKAYTYLGDLDKALKHLKKALRIEPKNEEIHFELGLIY 329
Cdd:PRK02603  37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYnMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116

                         90       100
                 ....*....|....*....|....*
gi 501423374 330 QLKQEQYLAAKEYERAKQLSQKKSE 354
Cdd:PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAE 141
TPR_12 pfam13424
Tetratricopeptide repeat;
181-243 6.17e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 6.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501423374  181 HYFLGLAYFYKSEYDKALKKFRLVVELVE-----DEEILALAYNAIGNIYVDKEEQEKALTNYLRACD 243
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 249-313 6.83e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 37.97  E-value: 6.83e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 501423374 249 PDIYFNCGAIYFNLGDFLQSVKYFQKALQITSNNSDWelhLYIGKAYTYLGDLDKALKHLKKALR 313
Cdd:COG3071  258 PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAY---AELARLLEQLGDPEEAAEHYRKALA 319
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH