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Conserved domains on  [gi|62901378|sp|Q8GXX7|]
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RecName: Full=Zinc finger CCCH domain-containing protein 33; Short=AtC3H33; AltName: Full=Zinc finger CCCH domain-containing protein ZFN1

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Sus scrofa proline-rich protein 3

Gene Ontology:  GO:0046872|GO:0003676
PubMed:  27990022|12665246
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
87-112 3.45e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.03  E-value: 3.45e-07
                          10        20
                  ....*....|....*....|....*.
gi 62901378    87 GQPECEYYLKTGTCKFGVTCKFHHPR 112
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-158 1.09e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.09e-06
                          10        20
                  ....*....|....*....|....*
gi 62901378   134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
275-301 1.67e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.67e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
321-347 6.26e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 6.26e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   321 PGEPLCVFYTRYGICKFGPSCKFDHPM 347
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
41-67 8.48e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.18  E-value: 8.48e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378    41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
87-112 3.45e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.03  E-value: 3.45e-07
                          10        20
                  ....*....|....*....|....*.
gi 62901378    87 GQPECEYYLKTGTCKFGVTCKFHHPR 112
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-158 1.09e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.09e-06
                          10        20
                  ....*....|....*....|....*
gi 62901378   134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
275-301 1.67e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.67e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
321-347 6.26e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 6.26e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   321 PGEPLCVFYTRYGICKFGPSCKFDHPM 347
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
41-67 8.48e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.18  E-value: 8.48e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378    41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
320-347 8.47e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.45  E-value: 8.47e-04
                           10        20
                   ....*....|....*....|....*...
gi 62901378    320 RPGEPLCVFYtRYGICKFGPSCKFDHPM 347
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
40-67 3.32e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.91  E-value: 3.32e-03
                           10        20
                   ....*....|....*....|....*...
gi 62901378     40 RPGEPDCSYYiRTGLCRFGSTCRFNHPR 67
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
131-157 4.50e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 4.50e-03
                           10        20
                   ....*....|....*....|....*..
gi 62901378    131 RSNEVDCAYFlRTGHCKFGGTCKFNHP 157
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
274-301 6.93e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 6.93e-03
                           10        20
                   ....*....|....*....|....*...
gi 62901378    274 RPGQPECQFYmKTGDCKFGTVCKFHHPR 301
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
87-112 9.78e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 9.78e-03
                           10        20
                   ....*....|....*....|....*.
gi 62901378     87 GQPECEYYlKTGTCKFGVTCKFHHPR 112
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
87-112 3.45e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.03  E-value: 3.45e-07
                          10        20
                  ....*....|....*....|....*.
gi 62901378    87 GQPECEYYLKTGTCKFGVTCKFHHPR 112
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-158 1.09e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.09e-06
                          10        20
                  ....*....|....*....|....*
gi 62901378   134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
275-301 1.67e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.67e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
321-347 6.26e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 6.26e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378   321 PGEPLCVFYTRYGICKFGPSCKFDHPM 347
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
41-67 8.48e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.18  E-value: 8.48e-06
                          10        20
                  ....*....|....*....|....*..
gi 62901378    41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
320-347 8.47e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.45  E-value: 8.47e-04
                           10        20
                   ....*....|....*....|....*...
gi 62901378    320 RPGEPLCVFYtRYGICKFGPSCKFDHPM 347
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
40-67 3.32e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.91  E-value: 3.32e-03
                           10        20
                   ....*....|....*....|....*...
gi 62901378     40 RPGEPDCSYYiRTGLCRFGSTCRFNHPR 67
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
131-157 4.50e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 4.50e-03
                           10        20
                   ....*....|....*....|....*..
gi 62901378    131 RSNEVDCAYFlRTGHCKFGGTCKFNHP 157
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
274-301 6.93e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 6.93e-03
                           10        20
                   ....*....|....*....|....*...
gi 62901378    274 RPGQPECQFYmKTGDCKFGTVCKFHHPR 301
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
87-112 9.78e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 9.78e-03
                           10        20
                   ....*....|....*....|....*.
gi 62901378     87 GQPECEYYlKTGTCKFGVTCKFHHPR 112
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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