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Conserved domains on  [gi|141626|sp|P23607|]
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RecName: Full=Zinc finger autosomal protein

Protein Classification

Zfx_Zfy_act and COG5048 domain-containing protein( domain architecture ID 12057222)

protein containing domains Zfx_Zfy_act, COG5048, zf-C2H2, and zf-H2C2_2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 70-347 4.49e-141

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


:

Pssm-ID: 461400  Cd Length: 328  Bit Score: 417.34  E-value: 4.49e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626      70 DVVIEDVQCTDIMDEADVSETVIIPEQVLNSDVTEEVSLTHCTVPDDVLASDITSASISMPKRVLTSESIHVSDIGHVEH 149
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLEH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     150 VVHDSvvEAEIITDPLATDVVSEEVLVADCASEAVIDANRIPVNQQDEEKNNCEDYLMISC------------------- 210
Cdd:pfam04704  81 VIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLddgekldhigstpltmsae 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     211 -------------------------------GTVDIVESEPENELGVELLDPNNSICVPREKMVYMAVNNSQQE-EELNV 258
Cdd:pfam04704 159 veqdsskldgfcpevikvyifkadpgeddlgGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEdEDLNV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     259 TEIADEIYMEVIVGEEDATASeHEQQVEDNKM-KTFMPIAWEAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 337
Cdd:pfam04704 239 AEIADEVYMEVIVGEEDAAVA-HEQQLDDSEVnKTFMPIAWAAAYGNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 141626     338 K-RRPDSRQYQ 347
Cdd:pfam04704 318 KkRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
480-604 6.36e-05

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.23  E-value: 6.36e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626   480 SKNFPHICVECGKGFCHPSELKKHMRIHTGEKPYECQY--CEYRSTDSSNLKTHVkTKHSKEMPFKCDICLLTFSDTKEV 557
Cdd:COG5048  29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHL-RTHHNNPSDLNSKSLPLSNSKASS 107

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 141626   558 QQHALVHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMC 604
Cdd:COG5048 108 SSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGN 154
zf-H2C2_2 pfam13465
Zinc-finger double domain;
670-694 3.61e-04

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.12  E-value: 3.61e-04
                          10        20
                  ....*....|....*....|....*
gi 141626     670 ELKKHMKTHSGQKVYQCEYCDYSTT 694
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
ROS_MUCR super family cl19880
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 315-394 2.75e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


The actual alignment was detected with superfamily member pfam05443:

Pssm-ID: 473244  Cd Length: 122  Bit Score: 38.21  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     315 TASALLHIDESAGLGRLAKQKP-----KKRRPDSrqyqtaiIIgpdghpltvypCMICGKKFKSrgfLKRHMKNHpeHLA 389
Cdd:pfam05443  31 VHAALAGLGEGAAPPAEEEPVPavpikKSITPDY-------II-----------CLEDGKPFKT---LKRHLTAH--GLT 87


                  ....*
gi 141626     390 KKKYR 394
Cdd:pfam05443  88 PEEYR 92
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 656-678 5.23e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 5.23e-03
                          10        20
                  ....*....|....*....|...
gi 141626     656 FRCKRCRTRFRQQSELKKHMKTH 678
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 70-347 4.49e-141

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 417.34  E-value: 4.49e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626      70 DVVIEDVQCTDIMDEADVSETVIIPEQVLNSDVTEEVSLTHCTVPDDVLASDITSASISMPKRVLTSESIHVSDIGHVEH 149
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLEH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     150 VVHDSvvEAEIITDPLATDVVSEEVLVADCASEAVIDANRIPVNQQDEEKNNCEDYLMISC------------------- 210
Cdd:pfam04704  81 VIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLddgekldhigstpltmsae 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     211 -------------------------------GTVDIVESEPENELGVELLDPNNSICVPREKMVYMAVNNSQQE-EELNV 258
Cdd:pfam04704 159 veqdsskldgfcpevikvyifkadpgeddlgGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEdEDLNV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     259 TEIADEIYMEVIVGEEDATASeHEQQVEDNKM-KTFMPIAWEAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 337
Cdd:pfam04704 239 AEIADEVYMEVIVGEEDAAVA-HEQQLDDSEVnKTFMPIAWAAAYGNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 141626     338 K-RRPDSRQYQ 347
Cdd:pfam04704 318 KkRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
480-604 6.36e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.23  E-value: 6.36e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626   480 SKNFPHICVECGKGFCHPSELKKHMRIHTGEKPYECQY--CEYRSTDSSNLKTHVkTKHSKEMPFKCDICLLTFSDTKEV 557
Cdd:COG5048  29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHL-RTHHNNPSDLNSKSLPLSNSKASS 107

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 141626   558 QQHALVHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMC 604
Cdd:COG5048 108 SSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGN 154
zf-H2C2_2 pfam13465
Zinc-finger double domain;
499-523 8.12e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 8.12e-05
                          10        20
                  ....*....|....*....|....*
gi 141626     499 ELKKHMRIHTGEKPYECQYCEYRST 523
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
670-694 3.61e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.12  E-value: 3.61e-04
                          10        20
                  ....*....|....*....|....*
gi 141626     670 ELKKHMKTHSGQKVYQCEYCDYSTT 694
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
ROS_MUCR pfam05443
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 315-394 2.75e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


Pssm-ID: 428475  Cd Length: 122  Bit Score: 38.21  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     315 TASALLHIDESAGLGRLAKQKP-----KKRRPDSrqyqtaiIIgpdghpltvypCMICGKKFKSrgfLKRHMKNHpeHLA 389
Cdd:pfam05443  31 VHAALAGLGEGAAPPAEEEPVPavpikKSITPDY-------II-----------CLEDGKPFKT---LKRHLTAH--GLT 87


                  ....*
gi 141626     390 KKKYR 394
Cdd:pfam05443  88 PEEYR 92
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 656-678 5.23e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 5.23e-03
                          10        20
                  ....*....|....*....|...
gi 141626     656 FRCKRCRTRFRQQSELKKHMKTH 678
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
 70-347 4.49e-141

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 417.34  E-value: 4.49e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626      70 DVVIEDVQCTDIMDEADVSETVIIPEQVLNSDVTEEVSLTHCTVPDDVLASDITSASISMPKRVLTSESIHVSDIGHVEH 149
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVSEGVIIPEQVLDSEVAIEVSLDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEVGHLEH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     150 VVHDSvvEAEIITDPLATDVVSEEVLVADCASEAVIDANRIPVNQQDEEKNNCEDYLMISC------------------- 210
Cdd:pfam04704  81 VIHDS--EREIVTDALTADMVSEEVLVADCASEAVIDASGVPLETQDDDKSNCEDYLMISLddgekldhigstpltmsae 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     211 -------------------------------GTVDIVESEPENELGVELLDPNNSICVPREKMVYMAVNNSQQE-EELNV 258
Cdd:pfam04704 159 veqdsskldgfcpevikvyifkadpgeddlgGTEDIVESEFENGHGVLLLEQGSSGRLPREKMVYMAVKDSQQEdEDLNV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     259 TEIADEIYMEVIVGEEDATASeHEQQVEDNKM-KTFMPIAWEAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPK 337
Cdd:pfam04704 239 AEIADEVYMEVIVGEEDAAVA-HEQQLDDSEVnKTFMPIAWAAAYGNNTDGIENKNGTASALLHIDESASLDRLLKQKPK 317

                         330
                  ....*....|.
gi 141626     338 K-RRPDSRQYQ 347
Cdd:pfam04704 318 KkRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
480-604 6.36e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.23  E-value: 6.36e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626   480 SKNFPHICVECGKGFCHPSELKKHMRIHTGEKPYECQY--CEYRSTDSSNLKTHVkTKHSKEMPFKCDICLLTFSDTKEV 557
Cdd:COG5048  29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHL-RTHHNNPSDLNSKSLPLSNSKASS 107

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 141626   558 QQHALVHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMC 604
Cdd:COG5048 108 SSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGN 154
zf-H2C2_2 pfam13465
Zinc-finger double domain;
499-523 8.12e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 8.12e-05
                          10        20
                  ....*....|....*....|....*
gi 141626     499 ELKKHMRIHTGEKPYECQYCEYRST 523
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
670-694 3.61e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.12  E-value: 3.61e-04
                          10        20
                  ....*....|....*....|....*
gi 141626     670 ELKKHMKTHSGQKVYQCEYCDYSTT 694
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
ROS_MUCR pfam05443
ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR ...
 315-394 2.75e-03

ROS/MUCR transcriptional regulator protein; This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.


Pssm-ID: 428475  Cd Length: 122  Bit Score: 38.21  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 141626     315 TASALLHIDESAGLGRLAKQKP-----KKRRPDSrqyqtaiIIgpdghpltvypCMICGKKFKSrgfLKRHMKNHpeHLA 389
Cdd:pfam05443  31 VHAALAGLGEGAAPPAEEEPVPavpikKSITPDY-------II-----------CLEDGKPFKT---LKRHLTAH--GLT 87


                  ....*
gi 141626     390 KKKYR 394
Cdd:pfam05443  88 PEEYR 92
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 485-507 4.30e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 4.30e-03
                          10        20
                  ....*....|....*....|...
gi 141626     485 HICVECGKGFCHPSELKKHMRIH 507
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 656-678 5.23e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 5.23e-03
                          10        20
                  ....*....|....*....|...
gi 141626     656 FRCKRCRTRFRQQSELKKHMKTH 678
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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