|
Name |
Accession |
Description |
Interval |
E-value |
| nop2p |
TIGR00446 |
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base ... |
297-571 |
4.32e-117 |
|
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188051 [Multi-domain] Cd Length: 264 Bit Score: 354.47 E-value: 4.32e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 297 LRTNTLKTRRRDLAQALINRGVNLDPLGKWSKsgLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 376
Cdd:TIGR00446 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYF--FEVKESPFSIGSTPEYLFGYYYPQEASSMIPPIALEPREDERVLDM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 377 CCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISK 456
Cdd:TIGR00446 79 AAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINRMGVLNTIVINADGRKFGAYLLKFDAILLDAPCSGEGVIRK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 457 DPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTgldFGQEG 535
Cdd:TIGR00446 159 DPSRKRNWSEEDIKYCSLLQKELIDAAIDAL----KPGGVLVYSTCSLEVEENEEVIDYILRKRpDVVEEII---KGDEF 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 158966689 536 FTRFQARrfhPTLRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:TIGR00446 232 FGINIGK---GEVKGALRVFPQNYDCEGFFVAKLRK 264
|
|
| RsmB |
COG0144 |
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
222-571 |
6.73e-106 |
|
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 331.97 E-value: 6.73e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 222 QRVHKRIQDIV-GVLRDFGAQREEgrsrAEYLSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTN 300
Cdd:COG0144 107 EAVGPGAAGLVnAVLRRVLREREA----LLAAADPVERLAVRYSHPEWLVERLRAAYGPEEAEALLAALNEPPPLDLRVN 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 301 TLKTRRRDLAQALINRGVNLDPlGKWSKSGLVVyDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 380
Cdd:COG0144 183 TLKASREELLARLAEEGIEAEP-TPLSPDGLRL-EGPGPVTALPGFREGLFSVQDEASQLVALLLDPKPGERVLDLCAAP 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 381 GGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG-FDRVLLDAPCSGTGVISKDPA 459
Cdd:COG0144 261 GGKTLHLAELMGNKGRVVAVDISEHRLKRLRENLARLGLSNVEVVVADARELLEWLPGkFDRVLLDAPCSGTGTLRRHPD 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 460 VKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLDFGQEGFTR 538
Cdd:COG0144 341 IKWRRTPEDIAELAALQRELLDAAARLL----KPGGRLVYSTCSLLPEENEEVVEAFLARHpDFELVPLAELLPGLALTD 416
|
330 340 350
....*....|....*....|....*....|...
gi 158966689 539 fqarrfhptlRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:COG0144 417 ----------GGYLRLLPHRHGTDGFFIARLRK 439
|
|
| Methyltr_RsmB-F |
pfam01189 |
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ... |
362-570 |
7.13e-103 |
|
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA.
Pssm-ID: 426109 [Multi-domain] Cd Length: 199 Bit Score: 315.13 E-value: 7.13e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 362 VMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG--F 439
Cdd:pfam01189 1 AILLAPQEGETILDMCAAPGGKTTHIAELMKNQGTVVAVDINKHRLKRVAENIHRLGVTNTIILNGDGRQPDQWLGGvlF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKK 519
Cdd:pfam01189 81 DRILLDAPCSGTGVIRRHPDVKWLRQEADIAQLAQLQKELLSAAIDLL----KPGGVLVYSTCSVLPEENEAVIEYFLQK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 158966689 520 R-NVRLVPT------GLDFGQEgftrfqarrfhptlrSTRRFYPHTHNMDGFFIAKFK 570
Cdd:pfam01189 157 HpDVELVPTplfepvGLAIGEQ---------------PTLRLLPHTHNGDGFFIAKLR 199
|
|
| PRK14902 |
PRK14902 |
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
223-571 |
5.96e-84 |
|
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
Pssm-ID: 237857 [Multi-domain] Cd Length: 444 Bit Score: 274.36 E-value: 5.96e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 223 RVHKRIQDIV-GVLRDFgaQREEGRSRAEyLSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNT 301
Cdd:PRK14902 109 RGHKGIAKFVnGVLRNI--LREGLPDIDE-IKDPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 302 LKTRRRDLAQALINRGVNLDPlGKWSKSGLVVydSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPG 381
Cdd:PRK14902 186 LKISVEELIEKLEEEGYEVEE-SLLSPEALVI--EKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPG 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 382 GKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG-FDRVLLDAPCSGTGVISKDPAV 460
Cdd:PRK14902 263 GKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEkFDKILVDAPCSGLGVIRRKPDI 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 461 KTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKrnvrlvptGLDFGQEGFTRFQ 540
Cdd:PRK14902 343 KYNKTKEDIESLQEIQLEILESVAQYL----KKGGILVYSTCTIEKEENEEVIEAFLEE--------HPEFELVPLQHEK 410
|
330 340 350
....*....|....*....|....*....|..
gi 158966689 541 A-RRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:PRK14902 411 PdELVYEVKDGYLQILPNDYGTDGFFIAKLRK 442
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
372-500 |
8.79e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 45.11 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 372 RILDMCCAPGGKTSYIAQLMKntGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKV-VGGFDRVLLDAPCsg 450
Cdd:cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEaDESFDVIISDPPL-- 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 158966689 451 tgviskdpavktnkdekdiqrcaHLQKELLLSAIDSVNAASKTGGYLVYC 500
Cdd:cd02440 77 -----------------------HHLVEDLARFLEEARRLLKPGGVLVLT 103
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
577-794 |
6.54e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 577 PQPHA-----GNSAAATPTEPDLKDQVTPKSENGSQPTKKARGA-VKAKQQLLRQPHSKKPFQKLNGIAKGPGLSTEP-S 649
Cdd:PHA03247 2631 PSPAAnepdpHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAqASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPeP 2710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 650 VPDAQVSTRP----SQSAGNADVNSKRKRSEKLKQRGPKwKPSKEAAVPKPSAPSrvedsrTPPVPTPSEIRAAPRPKDC 725
Cdd:PHA03247 2711 APHALVSATPlppgPAAARQASPALPAAPAPPAVPAGPA-TPGGPARPARPPTTA------GPPAPAPPAAPAAGPPRRL 2783
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 158966689 726 AP----SLGEAKKKQKGKQQLAQQPANGAAPLKEDAVSKGPSAPFVSPHSSTRPPPAKrrksmTKGNSQPLLS 794
Cdd:PHA03247 2784 TRpavaSLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP-----PPGPPPPSLP 2851
|
|
| P120R |
pfam08062 |
P120R (NUC006) repeat; This characteriztic repeat of proliferating cell nuclear antigen P120 ... |
609-630 |
8.43e-04 |
|
P120R (NUC006) repeat; This characteriztic repeat of proliferating cell nuclear antigen P120 is found in three copies.
Pssm-ID: 285324 Cd Length: 22 Bit Score: 37.08 E-value: 8.43e-04
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| nop2p |
TIGR00446 |
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base ... |
297-571 |
4.32e-117 |
|
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188051 [Multi-domain] Cd Length: 264 Bit Score: 354.47 E-value: 4.32e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 297 LRTNTLKTRRRDLAQALINRGVNLDPLGKWSKsgLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 376
Cdd:TIGR00446 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYF--FEVKESPFSIGSTPEYLFGYYYPQEASSMIPPIALEPREDERVLDM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 377 CCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISK 456
Cdd:TIGR00446 79 AAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINRMGVLNTIVINADGRKFGAYLLKFDAILLDAPCSGEGVIRK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 457 DPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTgldFGQEG 535
Cdd:TIGR00446 159 DPSRKRNWSEEDIKYCSLLQKELIDAAIDAL----KPGGVLVYSTCSLEVEENEEVIDYILRKRpDVVEEII---KGDEF 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 158966689 536 FTRFQARrfhPTLRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:TIGR00446 232 FGINIGK---GEVKGALRVFPQNYDCEGFFVAKLRK 264
|
|
| RsmB |
COG0144 |
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
222-571 |
6.73e-106 |
|
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 331.97 E-value: 6.73e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 222 QRVHKRIQDIV-GVLRDFGAQREEgrsrAEYLSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTN 300
Cdd:COG0144 107 EAVGPGAAGLVnAVLRRVLREREA----LLAAADPVERLAVRYSHPEWLVERLRAAYGPEEAEALLAALNEPPPLDLRVN 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 301 TLKTRRRDLAQALINRGVNLDPlGKWSKSGLVVyDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 380
Cdd:COG0144 183 TLKASREELLARLAEEGIEAEP-TPLSPDGLRL-EGPGPVTALPGFREGLFSVQDEASQLVALLLDPKPGERVLDLCAAP 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 381 GGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG-FDRVLLDAPCSGTGVISKDPA 459
Cdd:COG0144 261 GGKTLHLAELMGNKGRVVAVDISEHRLKRLRENLARLGLSNVEVVVADARELLEWLPGkFDRVLLDAPCSGTGTLRRHPD 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 460 VKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLDFGQEGFTR 538
Cdd:COG0144 341 IKWRRTPEDIAELAALQRELLDAAARLL----KPGGRLVYSTCSLLPEENEEVVEAFLARHpDFELVPLAELLPGLALTD 416
|
330 340 350
....*....|....*....|....*....|...
gi 158966689 539 fqarrfhptlRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:COG0144 417 ----------GGYLRLLPHRHGTDGFFIARLRK 439
|
|
| Methyltr_RsmB-F |
pfam01189 |
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ... |
362-570 |
7.13e-103 |
|
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA.
Pssm-ID: 426109 [Multi-domain] Cd Length: 199 Bit Score: 315.13 E-value: 7.13e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 362 VMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG--F 439
Cdd:pfam01189 1 AILLAPQEGETILDMCAAPGGKTTHIAELMKNQGTVVAVDINKHRLKRVAENIHRLGVTNTIILNGDGRQPDQWLGGvlF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKK 519
Cdd:pfam01189 81 DRILLDAPCSGTGVIRRHPDVKWLRQEADIAQLAQLQKELLSAAIDLL----KPGGVLVYSTCSVLPEENEAVIEYFLQK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 158966689 520 R-NVRLVPT------GLDFGQEgftrfqarrfhptlrSTRRFYPHTHNMDGFFIAKFK 570
Cdd:pfam01189 157 HpDVELVPTplfepvGLAIGEQ---------------PTLRLLPHTHNGDGFFIAKLR 199
|
|
| PRK14902 |
PRK14902 |
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
223-571 |
5.96e-84 |
|
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
Pssm-ID: 237857 [Multi-domain] Cd Length: 444 Bit Score: 274.36 E-value: 5.96e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 223 RVHKRIQDIV-GVLRDFgaQREEGRSRAEyLSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNT 301
Cdd:PRK14902 109 RGHKGIAKFVnGVLRNI--LREGLPDIDE-IKDPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 302 LKTRRRDLAQALINRGVNLDPlGKWSKSGLVVydSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPG 381
Cdd:PRK14902 186 LKISVEELIEKLEEEGYEVEE-SLLSPEALVI--EKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPG 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 382 GKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG-FDRVLLDAPCSGTGVISKDPAV 460
Cdd:PRK14902 263 GKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEkFDKILVDAPCSGLGVIRRKPDI 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 461 KTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKrnvrlvptGLDFGQEGFTRFQ 540
Cdd:PRK14902 343 KYNKTKEDIESLQEIQLEILESVAQYL----KKGGILVYSTCTIEKEENEEVIEAFLEE--------HPEFELVPLQHEK 410
|
330 340 350
....*....|....*....|....*....|..
gi 158966689 541 A-RRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:PRK14902 411 PdELVYEVKDGYLQILPNDYGTDGFFIAKLRK 442
|
|
| yebU |
PRK11933 |
rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed |
284-580 |
3.85e-60 |
|
rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Pssm-ID: 183387 [Multi-domain] Cd Length: 470 Bit Score: 210.92 E-value: 3.85e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 284 EFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLgKWSKSGLVV---YDSSVPIGATPEYLAGHYMLQGASSML 360
Cdd:PRK11933 24 DFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIerdDEDALPLGNTAEHLSGLFYIQEASSML 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 361 PVMAL-APQEH-ERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFpkvvGG 438
Cdd:PRK11933 103 PVAALfADDNApQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF----GA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 439 -----FDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDsvnaASKTGGYLVYCTCSITVEENEWVV 513
Cdd:PRK11933 179 alpetFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFH----ALKPGGTLVYSTCTLNREENQAVC 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 158966689 514 DYaLKKR---NVRLVPTGLDFGQ-------EGFtrfqarrFHptlrstrrFYPHTHNMDGFFIAKFKKFSNSIPQPH 580
Cdd:PRK11933 255 LW-LKETypdAVEFEPLGDLFPGaekalteEGF-------LH--------VFPQIYDSEGFFVARLRKTASVPRLPA 315
|
|
| rsmB |
TIGR00563 |
16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. ... |
225-571 |
6.47e-55 |
|
16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 273141 [Multi-domain] Cd Length: 426 Bit Score: 195.47 E-value: 6.47e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 225 HKRIQDIV-GVLRDFgaQREEGRSRAEYLSrlqkdLATYYSYGDFLLSKLMELFPLSELiEFLEANEVPRPITLRTNTLK 303
Cdd:TIGR00563 103 RKGLKGLVnGVLRRF--QREQEELLAEFNA-----LDARYLHPEWLVKRLQKAYPGQWQ-SICEANNQRPPMWLRINRTK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 304 TRRRDLAQALINRGVNLDPLGKWSKSglVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGK 383
Cdd:TIGR00563 175 HSRDEWLALLAEAGMKGFPHDLAPDA--VRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGK 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 384 TSYIAQLMKNtGVILANDANADRLKSVVGNLHRLGVTnTIISHYDGRQ----FPKVVGGFDRVLLDAPCSGTGVISKDPA 459
Cdd:TIGR00563 253 TTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGrgpsQWAENEQFDRILLDAPCSATGVIRRHPD 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 460 VKTNKDEKDIQRCAHLQKELLlsaiDSVNAASKTGGYLVYCTCSITVEENEWVVDyalkkrnvrlvptglDFGQEGFTR- 538
Cdd:TIGR00563 331 IKWLRKPRDIAELAELQSEIL----DAIWPLLKTGGTLVYATCSVLPEENSEQIK---------------AFLQEHPDFp 391
|
330 340 350
....*....|....*....|....*....|....
gi 158966689 539 FQARRFHPTLRSTR-RFYPHTHNMDGFFIAKFKK 571
Cdd:TIGR00563 392 FEKTGTPEQVRDGGlQILPHAEEGDGFFYAKLIK 425
|
|
| PRK14901 |
PRK14901 |
16S rRNA methyltransferase B; Provisional |
233-571 |
6.90e-55 |
|
16S rRNA methyltransferase B; Provisional
Pssm-ID: 237856 [Multi-domain] Cd Length: 434 Bit Score: 195.53 E-value: 6.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 233 GVLRDFGAQREEGRSrAEYLSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEA-NEVPrPITLRTNTLKTRRRDLAQ 311
Cdd:PRK14901 118 GILRQYLRAREAGDP-LPLPEDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWfNQPP-SLDLRINPLRTSLEEVQA 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 312 ALINRGVNLDPLGKwSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLM 391
Cdd:PRK14901 196 ALAEAGITATPIPG-LPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELM 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 392 KNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQF----PKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEK 467
Cdd:PRK14901 275 GDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLlelkPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPE 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 468 DIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDyalkkrnvrlvptgldfgqegftRFQARrfHPT 547
Cdd:PRK14901 355 KIQELAPLQAELLESLAPLL----KPGGTLVYATCTLHPAENEAQIE-----------------------QFLAR--HPD 405
|
330 340
....*....|....*....|....*..
gi 158966689 548 LRS---TRRFYPHTHNMDGFFIAKFKK 571
Cdd:PRK14901 406 WKLeppKQKIWPHRQDGDGFFMAVLRK 432
|
|
| PRK10901 |
PRK10901 |
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
233-571 |
1.22e-53 |
|
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
Pssm-ID: 236790 [Multi-domain] Cd Length: 427 Bit Score: 191.94 E-value: 1.22e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 233 GVLRDFgaQREegrsRAEYLSRLQKDLATYYSYGDFLLSKLMELFPlSELIEFLEANEVPRPITLRTNTLKTRRRDLAQA 312
Cdd:PRK10901 117 AVLRRF--QRE----QEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRDAYLAL 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 313 LINRGVNLDPlGKWSKSGLVVyDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMK 392
Cdd:PRK10901 190 LAEAGIEAFP-HAVGPDAIRL-ETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 393 NTGVIlANDANADRLKSVVGNLHRLGVTNTII--------SHYDGRQfpkvvggFDRVLLDAPCSGTGVISKDPAVKTNK 464
Cdd:PRK10901 268 QAQVV-ALDIDAQRLERVRENLQRLGLKATVIvgdardpaQWWDGQP-------FDRILLDAPCSATGVIRRHPDIKWLR 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 465 DEKDIQRCAHLQKELLlsaiDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLDFGqegftrfqarr 543
Cdd:PRK10901 340 RPEDIAALAALQSEIL----DALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHpDAELLDTGTPQQ----------- 404
|
330 340
....*....|....*....|....*...
gi 158966689 544 fhptlrSTRRFYPHTHNMDGFFIAKFKK 571
Cdd:PRK10901 405 ------PGRQLLPGEEDGDGFFYALLIK 426
|
|
| PRK14903 |
PRK14903 |
16S rRNA methyltransferase B; Provisional |
257-527 |
1.63e-36 |
|
16S rRNA methyltransferase B; Provisional
Pssm-ID: 184896 [Multi-domain] Cd Length: 431 Bit Score: 143.09 E-value: 1.63e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 257 KDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPlGKWSKSGLVVYDS 336
Cdd:PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVP-GKHSPFSLIVRKL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 337 SVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHR 416
Cdd:PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 417 LGVTNTIISHYDGRQFPKVVGG-FDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGG 495
Cdd:PRK14903 285 LKLSSIEIKIADAERLTEYVQDtFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKGG 360
|
250 260 270
....*....|....*....|....*....|...
gi 158966689 496 YLVYCTCSITVEENEWVV-DYALKKRNVRLVPT 527
Cdd:PRK14903 361 ILLYSTCTVTKEENTEVVkRFVYEQKDAEVIDI 393
|
|
| PRK14904 |
PRK14904 |
16S rRNA methyltransferase B; Provisional |
220-519 |
1.65e-35 |
|
16S rRNA methyltransferase B; Provisional
Pssm-ID: 237858 [Multi-domain] Cd Length: 445 Bit Score: 140.19 E-value: 1.65e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 220 DLQRVHK--RIQDIV-GVLRDFGAQRE------EGRSRAEYLSRLqkdlatyYSYGDFLLSKLMELFPLSELIEFLEANE 290
Cdd:PRK14904 104 KLARKYKgeHMAKLVnGVLRNISPETIsldewlKGMPEAERLSLL-------YSHPEWLLERWIARYGEERTEAMLSYNN 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 291 VPRPITLRTNTLKTRRRDLAQALINRGVnldplgKWSKSGLVVYDSSVPIGATPEYLA-GHYMLQGASSMLPVMALAPQE 369
Cdd:PRK14904 177 QAPLFGFRINRLKTTPEKFLAAPADASV------TFEKSGLPNFFLSKDFSLFEPFLKlGLVSVQNPTQALACLLLNPQP 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 370 HERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVtnTIIS--HYDGRQFPKvVGGFDRVLLDAP 447
Cdd:PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--TIIEtiEGDARSFSP-EEQPDAILLDAP 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 158966689 448 CSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLlsaidsVNAAS--KTGGYLVYCTCSITVEENEWVVDYALKK 519
Cdd:PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELL------DHAASllKPGGVLVYATCSIEPEENELQIEAFLQR 395
|
|
| Methyltr_RsmF_N |
pfam17125 |
N-terminal domain of 16S rRNA methyltransferase RsmF; This is the N-terminal domain of the ... |
284-358 |
1.28e-08 |
|
N-terminal domain of 16S rRNA methyltransferase RsmF; This is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising the catalytic core of the enzyme.
Pssm-ID: 465356 [Multi-domain] Cd Length: 88 Bit Score: 52.48 E-value: 1.28e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 158966689 284 EFLEANEVPRPITLRTNTLKTRRRDLAQALinrGVNLDPLgKWSKSGLvVYDSSVPIGATPEYLAGHYMLQGASS 358
Cdd:pfam17125 19 AFLAAYDEPRPVGLRVNTLKISVEEFLKLS---PFELEPV-PWCEEGF-YLEERPRPGKHPYHHAGLYYIQEPSA 88
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
372-500 |
8.79e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 45.11 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 372 RILDMCCAPGGKTSYIAQLMKntGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKV-VGGFDRVLLDAPCsg 450
Cdd:cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEaDESFDVIISDPPL-- 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 158966689 451 tgviskdpavktnkdekdiqrcaHLQKELLLSAIDSVNAASKTGGYLVYC 500
Cdd:cd02440 77 -----------------------HHLVEDLARFLEEARRLLKPGGVLVLT 103
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
577-794 |
6.54e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 577 PQPHA-----GNSAAATPTEPDLKDQVTPKSENGSQPTKKARGA-VKAKQQLLRQPHSKKPFQKLNGIAKGPGLSTEP-S 649
Cdd:PHA03247 2631 PSPAAnepdpHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAqASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPeP 2710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 650 VPDAQVSTRP----SQSAGNADVNSKRKRSEKLKQRGPKwKPSKEAAVPKPSAPSrvedsrTPPVPTPSEIRAAPRPKDC 725
Cdd:PHA03247 2711 APHALVSATPlppgPAAARQASPALPAAPAPPAVPAGPA-TPGGPARPARPPTTA------GPPAPAPPAAPAAGPPRRL 2783
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 158966689 726 AP----SLGEAKKKQKGKQQLAQQPANGAAPLKEDAVSKGPSAPFVSPHSSTRPPPAKrrksmTKGNSQPLLS 794
Cdd:PHA03247 2784 TRpavaSLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP-----PPGPPPPSLP 2851
|
|
| P120R |
pfam08062 |
P120R (NUC006) repeat; This characteriztic repeat of proliferating cell nuclear antigen P120 ... |
609-630 |
8.43e-04 |
|
P120R (NUC006) repeat; This characteriztic repeat of proliferating cell nuclear antigen P120 is found in three copies.
Pssm-ID: 285324 Cd Length: 22 Bit Score: 37.08 E-value: 8.43e-04
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
579-776 |
2.36e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 579 PHAGNSAAATPTEPDLKDQVTPKSENGSQPTKKARGAVKAKQQLLRQPHSKKPfqklngiakgPGLSTEPSVPDAQVSTR 658
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP----------AAKPAAPARPPVRRLAR 2888
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 659 PSQSagnadvnsKRKRSEKLKQRGPKWKPSKEAAV-PKPSAPSRVEDSRTPPVPTPSEIRAAPRPKDCAPSLGEAKKKQK 737
Cdd:PHA03247 2889 PAVS--------RSTESFALPPDQPERPPQPQAPPpPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
170 180 190
....*....|....*....|....*....|....*....
gi 158966689 738 GKQQLAQQPANGAAPlKEDAVSKGPSAPfvSPHSSTRPP 776
Cdd:PHA03247 2961 QPWLGALVPGRVAVP-RFRVPQPAPSRE--APASSTPPL 2996
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
577-780 |
4.04e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 40.63 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 577 PQPHAGNSAAATPTEPDLKDQVTPKSENGSQPTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKGPGlSTEPSVPDAQVS 656
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA-PAPAAAPAAAAR 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 657 TRPSQSAGNADVNSKRKRSEklkQRGPKWKPSKEAAVPKPSAPSrvedsrTPPVPTPSEIRAAPRPKDCAPSLGEAkKKQ 736
Cdd:PRK12323 464 PAAAGPRPVAAAAAAAPARA---APAAAPAPADDDPPPWEELPP------EFASPAPAQPDAAPAGWVAESIPDPA-TAD 533
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 158966689 737 KGKQQLAQQPANGAAPLkedAVSKGPSAPFVSPhsstRPPPAKR 780
Cdd:PRK12323 534 PDDAFETLAPAPAAAPA---PRAAAATEPVVAP----RPPRASA 570
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
581-785 |
4.12e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 581 AGNSAAATPTEPDLKDQVTPKSENGSQPTKKARGAVKAKQQLLRQPHSKKPfqklngiAKGPGLSTEPS----VPDAQVS 656
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP-------PPGPPPPSLPLggsvAPGGDVR 2863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 657 TR-PSQSAGNADVNSKRKRSEKLKQRGPKWKPSKEAAVPKPSAPSRVEDSRTPPVPTPS-EIRAAPRPKDCAPSLGEAKK 734
Cdd:PHA03247 2864 RRpPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQpPPPPQPQPPPPPPPRPQPPL 2943
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 158966689 735 KQKGKQQLAQQPANGAAPLKEDAVSKGPSA---PFVSPHSSTRPPPAKRRKSMT 785
Cdd:PHA03247 2944 APTTDPAGAGEPSGAVPQPWLGALVPGRVAvprFRVPQPAPSREAPASSTPPLT 2997
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
642-779 |
9.44e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158966689 642 PGLSTEPSVPDAQVSTRPSQSAgnadVNSKRKRSEKLKQRGPKWKPSKEAAVPK-PSAPSRVEDSRTPPVPTPSeiraAP 720
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAPRPSEPA----VTSRARRPDAPPQSARPRAPVDDRGDPRgPAPPSPLPPDTHAPDPPPP----SP 2631
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 158966689 721 RPKDCAPSLGEAkKKQKGKQQLAQQPANGAAPLKEDAVSKGPSAPFVSPHSSTRPPPAK 779
Cdd:PHA03247 2632 SPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689
|
|
| |
