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Conserved domains on  [gi|13386276|ref|NP_082279|]
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RNA polymerase II-associated protein 3 [Mus musculus]

Protein Classification

TPR and RPAP3_C domain-containing protein( domain architecture ID 12778535)

protein containing domains TPR, PLN03088, and RPAP3_C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 541-631 1.67e-33

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.16  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   541 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 620
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 13386276   621 MAVMFMSGPER 631
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
127-345 4.03e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 4.03e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---------------------------------------------- 114

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 13386276 287 ekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAI 345
Cdd:COG0457 115 --NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 295-430 2.12e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.05  E-value: 2.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  375 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 430
Cdd:PLN03088  93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 541-631 1.67e-33

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.16  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   541 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 620
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 13386276   621 MAVMFMSGPER 631
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
127-345 4.03e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 4.03e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---------------------------------------------- 114

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 13386276 287 ekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAI 345
Cdd:COG0457 115 --NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 137-257 1.22e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.90  E-value: 1.22e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQ 216
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 13386276  217 KLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSGP 257
Cdd:PLN03088  85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLV 125
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 112-385 4.61e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.32  E-value: 4.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   112 THDSLSQESESDEDGIRVDSQK--ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPyNPVLPTNRASAYFRLKKFAVAES 189
Cdd:TIGR00990 103 PADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   190 DCNLAIALSRTYTKAYARRGAA-------------------------------------RFALQKLEDARKDYEKVL--- 229
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAydglgkyadalldltasciidgfrneqsaqaverllkKFAESKAKEILETKPENLpsv 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   230 ------------ELEPDNFEATNELRK------INQALTSKEN-SGPGAAAAAESKpaagESKPTGGQQGRQKAIAEKDL 290
Cdd:TIGR00990 262 tfvgnylqsfrpKPRPAGLEDSNELDEetgngqLQLGLKSPESkADESYEEAARAF----EKALDLGKLGEKEAIALNLR 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   291 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINE 370
Cdd:TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417

                         330
                  ....*....|....*
gi 13386276   371 AKQDFETVLLLEPGN 385
Cdd:TIGR00990 418 AGKDYQKSIDLDPDF 432
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 295-430 2.12e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.05  E-value: 2.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  375 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 430
Cdd:PLN03088  93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 282-399 2.02e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 2.02e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 282 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 13386276 362 RTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG4783  82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 278-401 1.04e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAdRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 357
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 13386276   358 RGTARTFLGKINEAKQDFeTVLLLEPG--NKQAATELSRIKKELIE 401
Cdd:TIGR00990 200 RANAYDGLGKYADALLDL-TASCIIDGfrNEQSAQAVERLLKKFAE 244
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 134-167 2.98e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.97  E-value: 2.98e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 13386276    134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
134-167 5.52e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.18  E-value: 5.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 13386276   134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 541-631 1.67e-33

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.16  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   541 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 620
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 13386276   621 MAVMFMSGPER 631
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
127-345 4.03e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 4.03e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---------------------------------------------- 114

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 13386276 287 ekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAI 345
Cdd:COG0457 115 --NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
164-407 1.34e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.08  E-value: 1.34e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 164 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelr 243
Cdd:COG0457   4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 244 kinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPAN 323
Cdd:COG0457  81 ---------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 324 RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 403
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                ....
gi 13386276 404 HWDD 407
Cdd:COG0457 196 LLAL 199
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
195-399 1.91e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.22  E-value: 1.91e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 195 IALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskp 274
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALY---------------------------------- 46

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 275 tggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKA 354
Cdd:COG0457  47 --------------NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 13386276 355 FARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG0457 113 LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 134-385 6.58e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 6.58e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:COG2956   8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 214 ALQKLEDARKDYEKVLELEPDNFEATNELRKI-------NQALTSKEnsgpgaaaaaeskpaageskpTGGQQGRQKAIA 286
Cdd:COG2956  88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqegdwEKAIEVLE---------------------RLLKLGPENAHA 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 287 EKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLG 366
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226

                       250
                ....*....|....*....
gi 13386276 367 KINEAKQDFETVLLLEPGN 385
Cdd:COG2956 227 DPEEALELLRKALELDPSD 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
83-238 1.38e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.49  E-value: 1.38e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  83 KNRIKSYDYDAWAKLDVDRILDELDKEDstHDSLSQESESDEDgiRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMD 162
Cdd:COG4785  26 LAALLFAAVLALAIALADLALALAAAAL--AAAALAAERIDRA--LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE 101

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 13386276 163 ADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEA 238
Cdd:COG4785 102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 127-379 2.39e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 76.69  E-value: 2.39e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG2956  69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC 148

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL----------------------------------------- 187

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 287 ekdlgngFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFArrgtartfLG 366
Cdd:COG2956 188 -------YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA--------LA 252

                       250
                ....*....|...
gi 13386276 367 KINEAKQDFETVL 379
Cdd:COG2956 253 DLLERKEGLEAAL 265
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 134-339 4.98e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.50  E-value: 4.98e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:COG3914  78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 214 ALQKLEDARKDYEKVLELEPDNFEATNElrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdLGNG 293
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNN------------------------------------------------LGNA 189

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 13386276 294 FFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAER 339
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 127-238 4.71e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 4.71e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                        90       100       110
                ....*....|....*....|....*....|..
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEA 238
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 91-233 1.17e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.83  E-value: 1.17e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  91 YDAWAKLDVDRILDELDKEDSTHDSLSQESESDEDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVL 170
Cdd:COG5010  11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13386276 171 PTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEP 233
Cdd:COG5010  91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 137-257 1.22e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.90  E-value: 1.22e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQ 216
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 13386276  217 KLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSGP 257
Cdd:PLN03088  85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLV 125
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
127-250 1.24e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.24e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457  69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALT 250
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 141-248 1.55e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 1.55e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLED 220
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                        90       100
                ....*....|....*....|....*...
gi 13386276 221 ARKDYEKVLELEPDNFEATNELRKINQA 248
Cdd:COG4235 104 AIAAWQKLLALLPADAPARLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 124-235 1.63e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.91  E-value: 1.63e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 124 EDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203
Cdd:COG4783  28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                        90       100       110
                ....*....|....*....|....*....|..
gi 13386276 204 AYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 174-389 2.02e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 2.02e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 174 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltske 253
Cdd:COG3914  84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL------------- 150

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 254 nsgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 333
Cdd:COG3914 151 -----------------------------------NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 13386276 334 YEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAA 389
Cdd:COG3914 196 LEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 112-385 4.61e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.32  E-value: 4.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   112 THDSLSQESESDEDGIRVDSQK--ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPyNPVLPTNRASAYFRLKKFAVAES 189
Cdd:TIGR00990 103 PADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   190 DCNLAIALSRTYTKAYARRGAA-------------------------------------RFALQKLEDARKDYEKVL--- 229
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAydglgkyadalldltasciidgfrneqsaqaverllkKFAESKAKEILETKPENLpsv 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   230 ------------ELEPDNFEATNELRK------INQALTSKEN-SGPGAAAAAESKpaagESKPTGGQQGRQKAIAEKDL 290
Cdd:TIGR00990 262 tfvgnylqsfrpKPRPAGLEDSNELDEetgngqLQLGLKSPESkADESYEEAARAF----EKALDLGKLGEKEAIALNLR 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   291 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINE 370
Cdd:TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417

                         330
                  ....*....|....*
gi 13386276   371 AKQDFETVLLLEPGN 385
Cdd:TIGR00990 418 AGKDYQKSIDLDPDF 432
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
204-383 8.19e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 8.19e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 204 AYARRGAARFALQKLEDARKDYEkvlelepDNFEATNELRKINQALTSkENSGPGAAAAAESKPAAGESKPTGGQQGRQK 283
Cdd:COG4785   1 LYALALALLLALALAAAAASKAA-------ILLAALLFAAVLALAIAL-ADLALALAAAALAAAALAAERIDRALALPDL 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 363
Cdd:COG4785  73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                       170       180
                ....*....|....*....|
gi 13386276 364 FLGKINEAKQDFETVLLLEP 383
Cdd:COG4785 153 YLGRYELAIADLEKALELDP 172
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 295-430 2.12e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.05  E-value: 2.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276  375 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 430
Cdd:PLN03088  93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 131-249 3.95e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 3.95e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 131 SQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGA 210
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 13386276 211 ARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG4783  81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 124-249 8.61e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.29  E-value: 8.61e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 124 EDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 13386276 204 AYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 204-385 9.43e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.90  E-value: 9.43e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 204 AYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqk 283
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------------------------------------- 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 284 aiaekdlgngFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 363
Cdd:COG4783  48 ----------LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                       170       180
                ....*....|....*....|..
gi 13386276 364 FLGKINEAKQDFETVLLLEPGN 385
Cdd:COG4783 118 ALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
144-234 1.05e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.34  E-value: 1.05e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAEsDCNLAIALSRTYTKAYARRGAARFALQKLEDARK 223
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|.
gi 13386276 224 DYEKVLELEPD 234
Cdd:COG3063  81 YLERALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 203-408 1.98e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 1.98e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 203 KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrq 282
Cdd:COG3914  79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALF------------------------------------------ 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 283 kaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTAR 362
Cdd:COG3914 117 ------NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 13386276 363 TFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDDV 408
Cdd:COG3914 191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFA---LRQACDWEVY 233
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 282-399 2.02e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 2.02e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 282 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 13386276 362 RTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG4783  82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 278-407 2.12e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 2.12e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 357
Cdd:COG3914  72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 13386276 358 RGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA---LQDLGRLEE 198
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 290-397 6.83e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 6.83e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG4235  23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102

                        90       100
                ....*....|....*....|....*...
gi 13386276 370 EAKQDFETVLLLEPGNKQAATELSRIKK 397
Cdd:COG4235 103 EAIAAWQKLLALLPADAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 282-383 1.06e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 60.36  E-value: 1.06e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 282 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:COG5010  52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                        90       100
                ....*....|....*....|..
gi 13386276 362 RTFLGKINEAKQDFETVLLLEP 383
Cdd:COG5010 132 LLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-348 1.85e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 1.85e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 174 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEAtnelrkinqaltske 253
Cdd:COG4783  10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--------------- 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 254 nsgpgaaaaaeskpaageskptggqqgrqkaiaEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 333
Cdd:COG4783  75 ---------------------------------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                       170
                ....*....|....*
gi 13386276 334 YEEAERDCTQAIVLD 348
Cdd:COG4783 122 PDEAIAALEKALELD 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 133-388 6.25e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 6.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   133 KALVLKekGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAAR 212
Cdd:TIGR02917 194 DALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   213 FALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSgpgaaaaaeskpaageskptGGQQGRQKAIAEKD--- 289
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA--------------------YQYLNQILKYAPNShqa 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   290 ---LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLG 366
Cdd:TIGR02917 332 rrlLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411

                         250       260
                  ....*....|....*....|..
gi 13386276   367 KINEAKQDFETVLLLEPGNKQA 388
Cdd:TIGR02917 412 DPSEAIADLETAAQLDPELGRA 433
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 278-401 1.04e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAdRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 357
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 13386276   358 RGTARTFLGKINEAKQDFeTVLLLEPG--NKQAATELSRIKKELIE 401
Cdd:TIGR00990 200 RANAYDGLGKYADALLDL-TASCIIDGfrNEQSAQAVERLLKKFAE 244
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
167-348 1.08e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.16  E-value: 1.08e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 167 NPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYT------KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 240
Cdd:COG4785  32 AAVLALAIALADLALALAAAALAAAALAAERIDRALalpdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYN 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 241 elrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALL 320
Cdd:COG4785 112 ------------------------------------------------NRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                       170       180
                ....*....|....*....|....*...
gi 13386276 321 PANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALELD 171
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 302-407 5.56e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 5.56e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 302 QAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLL 381
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                        90       100
                ....*....|....*....|....*.
gi 13386276 382 EPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG4235  81 DPDNPEALYLLGLA---AFQQGDYAE 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
294-383 7.74e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 7.74e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 294 FFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERdCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQ 373
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|
gi 13386276 374 DFETVLLLEP 383
Cdd:COG3063  81 YLERALELDP 90
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 290-406 1.14e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG2956  48 LGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 13386276 370 EAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWD 406
Cdd:COG2956 128 KAIEVLERLLKLGPENAHAYCELAEL---YLEQGDYD 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 134-401 1.60e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 57.69  E-value: 1.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   214 ALQKLEDARKDYEKVLELEPDNFEATNELrkinQALTSKENSgpgaaaaaeskpaaGESKPTGGQQGRQKAIAEKDLGNg 293
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQL----GVTQYKEGS--------------IASSMATFRRCKKNFPEAPDVYN- 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   294 FFKE-----GKYEQAIECYTRGIAADR------TNALLPANRAMAYLK-IQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:TIGR00990 472 YYGEllldqNKFDEAIEKFDTAIELEKetkpmyMNVLPLINKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQL 551

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 13386276   362 RTFLGKINEAKQDFETvlllepgnkqaATELSRIKKELIE 401
Cdd:TIGR00990 552 LLQQGDVDEALKLFER-----------AAELARTEGELVQ 580
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 152-238 9.99e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.16  E-value: 9.99e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 152 EAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLEL 231
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                ....*..
gi 13386276 232 EPDNFEA 238
Cdd:COG4235  81 DPDNPEA 87
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
312-388 1.16e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 1.16e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13386276 312 AADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 388
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
127-254 3.02e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 3.02e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKEN 254
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 127-240 2.09e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 2.09e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218

                        90       100       110
                ....*....|....*....|....*....|....
gi 13386276 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATN 240
Cdd:COG3914 219 NLLFALRQACDWEVYDRFEELLAALARGPSELSP 252
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 134-167 2.98e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.97  E-value: 2.98e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 13386276    134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
134-167 5.52e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.18  E-value: 5.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 13386276   134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 162-348 5.77e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 5.77e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 162 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNe 241
Cdd:COG5010  14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY- 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 242 lrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLP 321
Cdd:COG5010  93 -----------------------------------------------NLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125

                       170       180
                ....*....|....*....|....*..
gi 13386276 322 ANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 309-395 6.22e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 6.22e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 309 RGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 388
Cdd:COG5010  45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124


                ....*..
gi 13386276 389 ATELSRI 395
Cdd:COG5010 125 YSNLAAL 131
TPR_1 pfam00515
Tetratricopeptide repeat;
203-235 6.53e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.18  E-value: 6.53e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 13386276   203 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 141-396 8.60e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 8.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLED 220
Cdd:TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   221 ARKDYEKVLELEPDNFEATNELRkinqalTSKENSGpgaaaaaeskpaagesKPTGGQQGRQKAIA-EKDLGN------- 292
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQLG------ISKLSQG----------------DPSEAIADLETAAQlDPELGRadlllil 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   293 GFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAK 372
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519

                         250       260
                  ....*....|....*....|....
gi 13386276   373 QDFETVLLLEPGNKQAATELSRIK 396
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLY 543
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
177-249 1.74e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 1.74e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13386276 177 AYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKdYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
TPR_11 pfam13414
TPR repeat;
141-181 1.89e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.07  E-value: 1.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 13386276   141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRL 181
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 290-407 4.09e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 4.09e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 13386276 370 EAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG2956  94 RAEELLEKLLELDPDDAEALRLLAEI---YEQEGDWEK 128
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 144-393 6.20e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 6.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARK 223
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   224 DYEKVLELEPDNFEATNEL--------------RKINQALTSKEN---SGPGAAAAAESKPAAGESKPTGGQQGRQK--- 283
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLadayavmknyakaiTSLKRALELKPDnteAQIGLAQLLLAAKRTESAKKIAKSLQKQHpka 702

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLpANRAMAYLKIQRYEEAERdcTQAIVLDGSYSKAFARRGTART 363
Cdd:TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVK--TLEAWLKTHPNDAVLRTALAEL 779

                         250       260       270
                  ....*....|....*....|....*....|..
gi 13386276   364 FL--GKINEAKQDFETVLLLEPGNKQAATELS 393
Cdd:TIGR02917 780 YLaqKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
327-399 7.89e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 7.89e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13386276 327 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQdFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 203-235 1.22e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.22e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 13386276    203 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
127-198 1.30e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.30e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 13386276 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIEcYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALS 198
Cdd:COG3063  19 LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
211-350 3.25e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 3.25e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 211 ARFALQKLEDARKDYEKVLELEPDNFEATNELrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdl 290
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------------------------------------------ 32

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 291 GNGFFKEGKYEQAIEcYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGS 350
Cdd:COG3063  33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_11 pfam13414
TPR repeat;
291-330 3.87e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 3.87e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 13386276   291 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLK 330
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 194-348 4.71e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 4.71e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 194 AIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNfeatnelrkinqaltskensgpgaaaaaeskpaagesk 273
Cdd:COG4235   9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------------------------------------- 50

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13386276 274 ptggqqgrqkAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG4235  51 ----------ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 144-389 4.94e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 4.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   144 YFKQGKYDEAIECYT-KGMDADPYNPVLPTNRASAYFRLKKFAVAESdcNLAIALSRTYTKAYARRGAARFALQ--KLED 220
Cdd:TIGR02917 100 YLLQGKFQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQK--SYEQALAIDPRSLYAKLGLAQLALAenRFDE 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   221 ARKDYEKVLELEPDNFEATNELRKINQALtskensgpgaaaaaeskpaageskptggqqgrqkaiaekdlgngffkeGKY 300
Cdd:TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSL------------------------------------------------GNI 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   301 EQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAErdctqaivldgsyskafarrgtartflgkineakQDFETVLL 380
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE----------------------------------KHADALLK 255


                  ....*....
gi 13386276   381 LEPGNKQAA 389
Cdd:TIGR02917 256 KAPNSPLAH 264
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 284-317 5.53e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.53e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 13386276    284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 317
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 294-397 6.00e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 6.00e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 294 FFKEGKYEQAIECYTRGIAADRTNALLPA---NRAMAYLKIQRYEEAERDCTQAIVLDGSYSK---AFARRGTARTFLGK 367
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                        90       100       110
                ....*....|....*....|....*....|
gi 13386276 368 INEAKQDFETVLLLEPGNKQAATELSRIKK 397
Cdd:COG1729  83 YDKARATLEELIKKYPDSEAAKEARARLAR 112
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 203-234 6.09e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 6.09e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 13386276   203 KAYARRGAARFALQKLEDARKDYEKVLELEPD 234
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 134-165 6.52e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 6.52e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 13386276   134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADP 165
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 141-385 8.32e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 8.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   141 GNKYFKQGKYDEAIECYTK----GMDADPYNPVLptnrASAYFRLKKF--AVAESDcNLAIALSRTYTKAYARRGAARFA 214
Cdd:TIGR02917  63 GKIYLALGDYAAAEKELRKalslGYPKNQVLPLL----ARAYLLQGKFqqVLDELP-GKTLLDDEGAAELLALRGLAYLG 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   215 LQKLEDARKDYEKVLELEPDNFEAtnelrKINQALTSKENSGPGAAAAAESKPAAGESKPTggqqgrqKAIAEKdlGNGF 294
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYA-----KLGLAQLALAENRFDEARALIDEVLTADPGNV-------DALLLK--GDLL 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283

                         250
                  ....*....|.
gi 13386276   375 FETVLLLEPGN 385
Cdd:TIGR02917 284 LQDALKSAPEY 294
TPR_1 pfam00515
Tetratricopeptide repeat;
284-317 1.01e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 13386276   284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 317
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 129-245 1.35e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276   129 VDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAesdcnLAIA---LSRTYTKA- 204
Cdd:TIGR02917 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA-----LAAAkklEKKQPDNAs 466

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 13386276   205 -YARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKI 245
Cdd:TIGR02917 467 lHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
TPR_1 pfam00515
Tetratricopeptide repeat;
323-351 3.31e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 3.31e-03
                          10        20
                  ....*....|....*....|....*....
gi 13386276   323 NRAMAYLKIQRYEEAERDCTQAIVLDGSY 351
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
209-249 5.92e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 5.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 13386276   209 GAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 144-247 7.80e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 38.30  E-value: 7.80e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13386276 144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNR---ASAYFRLKKFAVAESDcnLAIALSRTYTKAYA-RRGAARFALQKLE 219
Cdd:COG2976 100 AVDAGDLDKAAAQLQWVLDNAKDPALKALARlrlARVLLAQKKYDEALAT--LDAVKPEAFAALYAeLRGDILLAQGDKA 177

                        90       100
                ....*....|....*....|....*....
gi 13386276 220 DARKDYEKVLELEPDNFEATNELR-KINQ 247
Cdd:COG2976 178 EARAAYQKALAALPEDAPLRQLLQmKLDD 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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