|
Name |
Accession |
Description |
Interval |
E-value |
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
28-805 |
0e+00 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 1004.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 28 AGGDSNYFKTANKCTEGDFGVPFTMSS----RENIDKDPAFQKLSILPMLEQVANSGSCHYQEGVNDSDFENSEPMSRLY 103
Cdd:pfam05483 1 AGGDSNFFKSFNKCTEDDFEFPFAKSNlsknGENIDSDPAFQKLNFLPMLEQVANSGDCHYQEGLKDSDFENSEGLSRLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 104 SKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLL 183
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 184 KETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKEN 263
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 264 QVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQ 343
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 344 IATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFK 423
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 424 NNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTEL 503
Cdd:pfam05483 401 NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 504 EKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQ 583
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 584 GDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSK 663
Cdd:pfam05483 561 GDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 664 LELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIV 743
Cdd:pfam05483 641 LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166235158 744 EERDSELGLYKNREQEQSSAKIALETELSNIRNELVSLKKQLE-IEKEEKEKLKMAKENTAIL 805
Cdd:pfam05483 721 EERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEiEKEEKEKLKMEAKENTAIL 783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
105-776 |
9.30e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 9.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKvSIESELKQKE--------NKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAT 176
Cdd:TIGR02168 204 SLERQAEKAERYK-ELKAELRELElallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 177 IhwcNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMilafEELRVQAENARLEmhfkLKEDHEKIQHLEEEYQK 256
Cdd:TIGR02168 283 I---EELQKELYALANEISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDE----LAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 257 EVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSekkdhltSELEDIKMSMQRSMSTQK 336
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE-------ARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 337 ALEEDLQiatktisqltevkEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNEL 416
Cdd:TIGR02168 425 ELLKKLE-------------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 417 EEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETRekevhdLQEQVTVTKTS---EQHYL 493
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGR------LQAVVVENLNAakkAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 494 KQVEEMK-TELEKEKLKNTELTASCDMLLLENKKFVQEASDM--------------------------ALELKK---HQE 543
Cdd:TIGR02168 566 KQNELGRvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvkfdpklrkalsyllggvlvvddldnALELAKklrPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 544 DIIN------------------------CKKQE-ERLLKQIENLEEKEMHLRDELESVRKEFiqqgDEVKCKLDKSEENA 598
Cdd:TIGR02168 646 RIVTldgdlvrpggvitggsaktnssilERRREiEELEEKIEELEEKIAELEKALAELRKEL----EELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 599 RSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRF--- 675
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkal 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 676 EEMTNNYQKEIENKKIS----EGKLLGEVEKAKATVDEAVKLQKEIDlRCQHKIAEMVALMEKHKHQYDKIVEERDSELG 751
Cdd:TIGR02168 802 REALDELRAELTLLNEEaanlRERLESLERRIAATERRLEDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEALLN 880
|
730 740
....*....|....*....|....*
gi 166235158 752 LYKNREQEQSSAKIALETELSNIRN 776
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRE 905
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-777 |
3.22e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 104 SKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQ-----RKAIQELQFENEKV--SLKLEEEIQENKDLIKENNAT 176
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARkaeeeRKAEEARKAEDAKKaeAVKKAEEAKKDAEEAKKAEEE 1248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 177 IHWCNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMilAFEELRVQAENARLEMHFKLKEDHEKiqhlEEEYQK 256
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK--KADEAKKAEEKKKADEAKKKAEEAKK----ADEAKK 1322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 257 EVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKmsmqRSMSTQK 336
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKK 1398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 337 ALEEDLQIATKTISQLTEVKEAQmEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKliTVELQKKSNEL 416
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK--KAEEAKKADEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 417 EEMTKFKNNKE---VELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREK--EVHDLQEQVTVTKTSEQH 491
Cdd:PTZ00121 1476 KKKAEEAKKADeakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAE 1555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 492 YLKQVEEMKTELEK---EKLKNTELTASCDMLLLENKK-------FVQEASDMALELKKHQEDIINCK--KQEERLLKQI 559
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAkkaEEDKNMALRKAEEAKKAEEARieevmklYEEEKKMKAEEAKKAEEAKIKAEelKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 560 ENLEEKEMHLRDELESVRKEfiQQGDEVKCKLDKSEENARSIECEVLKKEKQMKilESKCNNLKKQVENKSKnIEELHQE 639
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKA--EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE--KKAAEALKKEAEEAKK-AEELKKK 1710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 640 NKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTnnyQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDL 719
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 720 RCQHKIAEMVALMEKHKHQYDKIVEErDSELGLYKNREQEQSSAKIALETELSNIRNE 777
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEG-GKEGNLVINDSKEMEDSAIKEVADSKNMQLE 1844
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
222-623 |
1.49e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 222 FEELRVQAENARLEMhfkLKEDHEKIQHLEEEYQKEVNNKENQVSELLIqsaekenKMKDLTFLLEESRDKANQLEEKTK 301
Cdd:TIGR02169 664 GGILFSRSEPAELQR---LRERLEGLKRELSSLQSELRRIENRLDELSQ-------ELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 302 LQDENLKELSEKKDHLTSELEDIKMSMQRsmstqkaLEEDLQIATKTISQLtevkEAQMEELnKAKTTHSFVVtelkatt 381
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKE-------LEARIEELEEDLHKL----EEALNDL-EARLSHSRIP------- 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 382 cTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDE-KKQVEKLAEELQEK 460
Cdd:TIGR02169 795 -EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENlNGKKEELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 461 EQEltflLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMaLELKK 540
Cdd:TIGR02169 874 EAA----LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 541 HQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFiqqgDEVKCKLDKSEENARSI-----ECEVLKKEKQMKIL 615
Cdd:TIGR02169 949 EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAIlerieEYEKKKREVFMEAF 1024
|
....*...
gi 166235158 616 ESKCNNLK 623
Cdd:TIGR02169 1025 EAINENFN 1032
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
93-646 |
2.34e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 93 FENSEPMSRLYSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSlKLEEEIQENKDLIKE 172
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLE-KEVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 173 NNATIhwcNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMilafEELRVQAENARL--EMHFKLKEDHEKIQHL 250
Cdd:PRK03918 243 LEKEL---ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL----KELKEKAEEYIKlsEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 251 EEEYQKEVNNKENQVSELliqsAEKENKMKDLTFLLEESRDKANQLEEKTKLQDEnLKELSEKKDHLTSEL-----EDIK 325
Cdd:PRK03918 316 LSRLEEEINGIEERIKEL----EEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLtgltpEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 326 MSMQRSMSTQKALEEDLQIATKTISQL---TEVKEAQMEELNKAKtthsfvvtelkaTTCTLEELLRTEQQRLEknedQL 402
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELkkeIKELKKAIEELKKAK------------GKCPVCGRELTEEHRKE----LL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 403 KLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQV 482
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 483 TVTK---TSEQHYLKQVEEMKTELE--KEKLKNTELTASCDMLLLENKKF--VQEASDMALELKKHQEDII---NCKKQE 552
Cdd:PRK03918 535 IKLKgeiKSLKKELEKLEELKKKLAelEKKLDELEEELAELLKELEELGFesVEELEERLKELEPFYNEYLelkDAEKEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 553 ERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDK-SEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSK 631
Cdd:PRK03918 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570
....*....|....*
gi 166235158 632 NIEELHQENKTLKKK 646
Cdd:PRK03918 695 TLEKLKEELEEREKA 709
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
105-705 |
2.40e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKvsieselkqkenKLQENRKIIEAQRKAIQELQFENEKVslKLEEEIQENKDLIKENNATIhwcnllk 184
Cdd:COG1196 204 PLERQAEKAERYR------------ELKEELKELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAEL------- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 185 etcaRSAEKtnkyeyEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFkLKEDHEKIQHLEEEYQKEVNNKENQ 264
Cdd:COG1196 263 ----AELEA------ELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR-LEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 265 VSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQI 344
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 345 ATKTISQLTEVKEAQMEELNKAKTthsfvvtELKATTCTLEELLRtEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKN 424
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEE-------EEEEEEEALEEAAE-EEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 425 NKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKE---------------VHDLQEQVTVTKTSE 489
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEaayeaaleaalaaalQNIVVEDDEVAAAAI 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 490 QHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIinckkQEERLLKQIENLEEKEMHL 569
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG-----DTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 570 RDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSA 649
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 166235158 650 EIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKA 705
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
68-735 |
4.30e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 4.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 68 SILPMLEQvANSGSCHYQEGVNDSDFEN-SEPMSRLYSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRK-AI 145
Cdd:pfam15921 191 SILVDFEE-ASGKKIYEHDSMSTMHFRSlGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQdRI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 146 QELQFENEKVSLKLEEE----------IQENKDLIKE---NNATIHWCNLlketcARSAEKTNKYEYEREETRQVYVDLN 212
Cdd:pfam15921 270 EQLISEHEVEITGLTEKassarsqansIQSQLEIIQEqarNQNSMYMRQL-----SDLESTVSQLRSELREAKRMYEDKI 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 213 SNIEK-MILAFEELrvqaENARLEmhfklkedhekiqhlEEEYQKEVNNKENQVSELLIQSAEKENKMKdltflLEESRD 291
Cdd:pfam15921 345 EELEKqLVLANSEL----TEARTE---------------RDQFSQESGNLDDQLQKLLADLHKREKELS-----LEKEQN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 292 KanqleektKLQDENLKElSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQiatktiSQLtEVKEAQMEELNKAKTTHS 371
Cdd:pfam15921 401 K--------RLWDRDTGN-SITIDHLRRELDDRNMEVQRLEALLKAMKSECQ------GQM-ERQMAAIQGKNESLEKVS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 372 FVVTELKATTCTLE---ELLRTEQQRLEKNEDQLKLITVELQKKSNELE----EMTKFKNNKEVELEELKNILAEDQKLL 444
Cdd:pfam15921 465 SLTAQLESTKEMLRkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 445 DEKKQVEKLAEELQEKEQELTFL---LETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKL-------KNTELT 514
Cdd:pfam15921 545 NVQTECEALKLQMAEKDKVIEILrqqIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKIlkdkkdaKIRELE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 515 ASCDMLLLENKKFVQEASDMALELKkhqediiNCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKS 594
Cdd:pfam15921 625 ARVSDLELEKVKLVNAGSERLRAVK-------DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 595 EENARSIECEVLKKEKQMKILESK-------CNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELE 667
Cdd:pfam15921 698 KMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE 777
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 668 LESTKQRFEEMTNnyqkEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKH 735
Cdd:pfam15921 778 LSTVATEKNKMAG----ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 841
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
223-516 |
5.85e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 5.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 223 EELRVQAENARLemHFKLKEDHEKIQHleEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKL 302
Cdd:COG1196 203 EPLERQAEKAER--YRELKEELKELEA--ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 303 QDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATtc 382
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 383 tLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKfknnKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQ 462
Cdd:COG1196 357 -EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA----AAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 166235158 463 ELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTAS 516
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
305-660 |
1.46e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 305 ENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTL 384
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 385 EELlRTEQQRLEKNEDQLKLITVELQKKSNELEEMtkfknnkeVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQEL 464
Cdd:TIGR02169 754 ENV-KSELKELEARIEELEEDLHKLEEALNDLEAR--------LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 465 TFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQED 544
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 545 IINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDkseenARSIECEVLKKEKQMKILESKCNNLKK 624
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-----LEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
330 340 350
....*....|....*....|....*....|....*.
gi 166235158 625 QVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIK 660
Cdd:TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
105-765 |
1.73e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQR----KAIQELQFENEKVSLKLEEEIQENKDLIKENNA----- 175
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKaedaRKAEEARKAEDAKRVEIARKAEDARKAEEARKAedakk 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 176 ---------TIHWCNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAfEELRVQAENARLEMHFKLKEDH-- 244
Cdd:PTZ00121 1178 aeaarkaeeVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKA-EEAKKDAEEAKKAEEERNNEEIrk 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 245 ------------------------EKIQHLEEEYQKEVNNKENQV--SELLIQSAEKENKMKDLTFLLEESRDKANQLE- 297
Cdd:PTZ00121 1257 feearmahfarrqaaikaeearkaDELKKAEEKKKADEAKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKKADAAKk 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 298 --EKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVT 375
Cdd:PTZ00121 1337 kaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 376 ELKATTCTLEELLRTEQQRLEKNEDQLKLITvELQKKSNELE--EMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKL 453
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKkaEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 454 AEELQEKEQELTflLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKL----KNTELTASCDMLLLENKKFVQ 529
Cdd:PTZ00121 1496 KKKADEAKKAAE--AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdelkKAEELKKAEEKKKAEEAKKAE 1573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 530 EASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLD----KSEENARSIEcEV 605
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEqlkkKEAEEKKKAE-EL 1652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 606 LKKEKQMKIlesKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEiKVSKLELELESTKQRFEEMTNnyQKE 685
Cdd:PTZ00121 1653 KKAEEENKI---KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKK--AEE 1726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 686 IENKKISEGKLLGEVEKAKAtvdEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKI 765
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKA---EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
394-766 |
2.57e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 394 RLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREK 473
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 474 EVHDLQEQvtvTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEE 553
Cdd:COG1196 313 ELEERLEE---LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 554 RLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIEcevlkkekqmkileskcnNLKKQVENKSKNI 633
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE------------------EEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 634 EELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEemtnnyqkeienkkisegkLLGEVEKAKATVDEAVKL 713
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL-------------------LLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 166235158 714 QKEIDLrcQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIA 766
Cdd:COG1196 513 ALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
85-718 |
5.69e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 5.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 85 QEGVNDSDFENSEPMSRLYSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFEneKVSLKLEEEIQ 164
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEE 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 165 ENKDLIKENNATIhwcNLLKETCARSAEKTNKYEYEREETRQVYVDLNSnIEKMILAFEELR---VQAENARLEMHFKLK 241
Cdd:TIGR02168 448 ELEELQEELERLE---EALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSegvKALLKNQSGLSGILG 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 242 EDHEKIqHLEEEYQKEVNNK----------ENQVSELLIQSAEKENKMKDLTFLlEESRDKANQLEEKTKLQDENLKELS 311
Cdd:TIGR02168 524 VLSELI-SVDEGYEAAIEAAlggrlqavvvENLNAAKKAIAFLKQNELGRVTFL-PLDSIKGTEIQGNDREILKNIEGFL 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 312 EKKDHLTSELEDIKMSMQrSMSTQKALEEDLQIATKTISQLTEvkEAQMEELNKAKTTHSFVVT--ELKATTCTLE---E 386
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALS-YLLGGVLVVDDLDNALELAKKLRP--GYRIVTLDGDLVRPGGVITggSAKTNSSILErrrE 678
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 387 LLRTEQQrLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEE-----------LKNILAEDQKLLDEKKQVEKLAE 455
Cdd:TIGR02168 679 IEELEEK-IEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqisalrkdLARLEAEVEQLEERIAQLSKELT 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 456 ELQEKEQEltfLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDmlllenkkfvqEASDMA 535
Cdd:TIGR02168 758 ELEAEIEE---LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE-----------EAANLR 823
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 536 LELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESvrkefiqqgdevkckldkSEENARSIECEVLKKEKQMKIL 615
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE------------------LEELIEELESELEALLNERASL 885
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 616 ESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFeemTNNYQKEIENKKISEGK 695
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENK 962
|
650 660
....*....|....*....|...
gi 166235158 696 LLGEVEKAKATVDEavkLQKEID 718
Cdd:TIGR02168 963 IEDDEEEARRRLKR---LENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
394-677 |
6.23e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 6.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 394 RLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTF-----LL 468
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIaslerSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 469 ETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTascdmlllenkkfvqeasdmalelkkhqEDIINC 548
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT----------------------------EEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 549 KKQEERLLKQIENLEEKEMHLRDELESVRKE---FIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQ 625
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 166235158 626 VENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEE 677
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
103-757 |
8.46e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 8.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 103 YSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELqfeNEKVSLKLEEEIQENKDLIKENNATIHWCN- 181
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIASLEr 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 182 ---LLKETCARSAEKTNKYEYEREETRQVYVDLNSNIE-------KMILAFEELR------------VQAENARL-EMHF 238
Cdd:TIGR02169 309 siaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKeeledlraeleeVDKEFAETrDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 239 KLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLT 318
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 319 SELEDIKMSMQRSMSTQKALEEDLQIATK----------------------------TISQLTEVKEAQMEELNKAKTTH 370
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAqaraseervrggraveevlkasiqgvhgTVAQLGSVGERYATAIEVAAGNR 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 371 -SFVVTELKATTCTLEELLRTEQ------------QRLEKNEDQLKL-----ITVELQKKSNELEEMTKFKNNKEV---E 429
Cdd:TIGR02169 549 lNNVVVEDDAVAKEAIELLKRRKagratflplnkmRDERRDLSILSEdgvigFAVDLVEFDPKYEPAFKYVFGDTLvveD 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 430 LEELKNILAEDQKLLDEKKQVEK----------LAEELQEKEQELTFLLETREKEvHDLQEQVTVTKTSEQHYLKQVEEM 499
Cdd:TIGR02169 629 IEAARRLMGKYRMVTLEGELFEKsgamtggsraPRGGILFSRSEPAELQRLRERL-EGLKRELSSLQSELRRIENRLDEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 500 KTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKE 579
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 580 FIQQgdevkcKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEI 659
Cdd:TIGR02169 788 LSHS------RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 660 KVSKLELELESTKQRFEEMTNNY---QKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKiAEMVALMEKHK 736
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPK 940
|
730 740
....*....|....*....|.
gi 166235158 737 HQYDKIVEERDSELGLYKNRE 757
Cdd:TIGR02169 941 GEDEEIPEEELSLEDVQAELQ 961
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
132-781 |
1.01e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 132 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLLKETCARSAEKTNKYEYEREETRQVYVDL 211
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 212 --NSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEES 289
Cdd:pfam02463 246 lrDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 290 RDKANQLEEKTKLQDENLKELSEKKDH-LTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKT 368
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREaEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 369 THSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKK 448
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 449 QVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFV 528
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 529 QEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKK 608
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 609 EKQMKILEskcnNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIEN 688
Cdd:pfam02463 646 SGLRKGVS----LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 689 KKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIALE 768
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
650
....*....|...
gi 166235158 769 TELSNIRNELVSL 781
Cdd:pfam02463 802 ELRALEEELKEEA 814
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
105-819 |
1.07e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKVSIESELKQKENKL-QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLL 183
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 184 KETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKEN 263
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 264 QVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLtsELEDIKMSMQRSMSTQKALEEDLQ 343
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEEL--EKQELKLLKDELELKKSEDLLKET 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 344 IATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFK 423
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 424 NNKEVELEELKNILAEDQ---KLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMK 500
Cdd:pfam02463 558 DEVEERQKLVRALTELPLgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 501 TELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVR-KE 579
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKlKL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 580 FIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEI 659
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 660 KVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAemvalmekhkhqy 739
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT------------- 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 740 dKIVEERDSELGLYKNREQEQSSAKIALETELSNIRNELVSLKKQLEIEKEEKEKLKMAKENTAILKDKKDKKIQASLLE 819
Cdd:pfam02463 865 -KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE 943
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
130-643 |
1.79e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 130 KLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQ--ENKDL----------IKENNATIHWCNLLKETCARSAEKTNKY 197
Cdd:PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEekEEKDLherlngleseLAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 198 EYEREETRQVYVDLNSNIEKMilafEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQK----------EVNNKENQVSE 267
Cdd:PRK02224 243 LEEHEERREELETLEAEIEDL----RETIAETEREREELAEEVRDLRERLEELEEERDDllaeaglddaDAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 268 LLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATK 347
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 348 TISQLTEVKEAQMEELNKAKTTHSFVVTELKattcTLEELLRTEQQRLEKNEDQLKL--------------ITVELQKKS 413
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREA----ELEATLRTARERVEEAEALLEAgkcpecgqpvegspHVETIEEDR 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 414 NELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQeltfLLETREKEVHDLQEQVTVTKTSEQHYL 493
Cdd:PRK02224 475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE----LIAERRETIEEKRERAEELRERAAELE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 494 KQVEEMK---TELEKEKLKNTELTASCDMLLLENKkfvqEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLR 570
Cdd:PRK02224 551 AEAEEKReaaAEAEEEAEEAREEVAELNSKLAELK----ERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166235158 571 DELESVRKEFIQQGDEV-KCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQ---VENKSKNIEELHQENKTL 643
Cdd:PRK02224 627 ERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREAL 703
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
222-520 |
2.85e-08 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 57.63 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 222 FEELRVQAENARLEMHFKLKED-HEKIQHLEEEYQKEVnnkenqvselLIQSAEKENKMKDLTFLLEESRDKANQLEEKT 300
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKlSEALDKLRSYLPKLN----------PLREEKKKVSVKSLEELIKDVEEELEKIEKEI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 301 KLQDENLKELSEKKDHLTSELE--------DIKMSMQRSMSTQKA----LEEDLQIATKTISQLTEVkeaqmEELNKAKT 368
Cdd:PRK05771 103 KELEEEISELENEIKELEQEIErlepwgnfDLDLSLLLGFKYVSVfvgtVPEDKLEELKLESDVENV-----EYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 369 TH-SFVVTELKATTCTLEELLRTEQQRLEKNEDqlKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEK 447
Cdd:PRK05771 178 YVyVVVVVLKELSDEVEEELKKLGFERLELEEE--GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEY 255
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 166235158 448 K--QVEKLAEELQEKEQELTFLLE--TREKEVHDLQEqvTVTKTSEQHYLKQVEEMKTELEK--EKLKNTELTASCDML 520
Cdd:PRK05771 256 LeiELERAEALSKFLKTDKTFAIEgwVPEDRVKKLKE--LIDKATGGSAYVEFVEPDEEEEEvpTKLKNPKFIKPFESL 332
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
108-688 |
5.59e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 5.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 108 KEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEkvSLKLEEEIQENKDLIKENNATIHWCNLLKETc 187
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE--AKKKAEEDKKKADELKKAAAAKKKADEAKKK- 1426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 188 ARSAEKTNKYEYEREETRQVYvDLNSNIEKMILAfEELRVQAENARLEMHFKLKEDHEKiqhLEEEYQKEVNNKENQVSE 267
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKA-EEAKKKAEEAKKADEAKKKAEEAK---KADEAKKKAEEAKKKADE 1501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 268 LliQSAEKENKMKDLTFLLEESR--DKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIA 345
Cdd:PTZ00121 1502 A--KKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 346 TKTISQLTEVKEAQMEELNKAKTThsfvvtelkattctlEELLRTEQQRLEKNEdqlKLITVELQKKSNELEEMTKFKNN 425
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEE---------------EKKMKAEEAKKAEEA---KIKAEELKKAEEEKKKVEQLKKK 1641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 426 KEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQeltfllETREKEVHDLQEQVTVTKTSEQHylKQVEEMKTELEK 505
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE------EAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKEAE 1713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 506 EKLKNTELTASCDmlllENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGD 585
Cdd:PTZ00121 1714 EKKKAEELKKAEE----ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 586 -----EVKCKLDKSEENARSIE------CEVLKKEKQMKILESK-CNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQ 653
Cdd:PTZ00121 1790 ekrrmEVDKKIKDIFDNFANIIeggkegNLVINDSKEMEDSAIKeVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD 1869
|
570 580 590
....*....|....*....|....*....|....*
gi 166235158 654 LNAYEIKVSKLELELESTKQRFEEMTNNYQKEIEN 688
Cdd:PTZ00121 1870 FNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
200-717 |
7.53e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 7.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 200 EREETRQVYVDLNSNIEKMILAFEELR-----VQAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAE 274
Cdd:PRK03918 142 ESDESREKVVRQILGLDDYENAYKNLGevikeIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 275 KENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEdLQIATKTISQLTE 354
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 355 VKEAQMEELNKaktthsfvvtelkattctLEELLRTEQQRLEKNEDQLKlitvELQKKSNELEEMTKfknnKEVELEELK 434
Cdd:PRK03918 301 FYEEYLDELRE------------------IEKRLSRLEEEINGIEERIK----ELEEKEERLEELKK----KLKELEKRL 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 435 NILAEDQKLLDEKKQV--------EKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKE 506
Cdd:PRK03918 355 EELEERHELYEEAKAKkeelerlkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 507 KLK----NTELTASCDMLLLEnkKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEE--KEMHLRDELESVRKEF 580
Cdd:PRK03918 435 KGKcpvcGRELTEEHRKELLE--EYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 581 IQQGDEvkcKLDKSEENARSIECEVLKKEKQMKILESKCNNLkKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIK 660
Cdd:PRK03918 513 KKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 661 VSKLEL-ELESTKQRFEEMTNNyQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEI 717
Cdd:PRK03918 589 ELEERLkELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-678 |
1.17e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 120 IESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLLKETCARSAEKTNKYEY 199
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 200 EREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEyQKEVNNKENQVSELLIQSAEKENKM 279
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 280 KDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQ 359
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 360 MEELNKAKTTHSFVVTELKattctlEELLRTEQQRLEKNEDQLKLITVELQkksneleEMTKFKNNKEVELEELKNILAE 439
Cdd:COG1196 483 LEELAEAAARLLLLLEAEA------DYEGFLEGVKAALLLAGLRGLAGAVA-------VLIGVEAAYEAALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 440 DQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDM 519
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 520 LLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEfiQQGDEVKCKLDKSEENAR 599
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA--EEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 166235158 600 SIEcevlKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLkkkSSAEIKQLNAYEIKVSKLELELESTKQRFEEM 678
Cdd:COG1196 708 ELA----EAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL---LEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
121-757 |
1.18e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 121 ESELKQKENKLQENRKIIEAQRKaIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLLKETCARSAEKTNKYEYE 200
Cdd:pfam15921 96 ESNELHEKQKFYLRQSVIDLQTK-LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 201 REETRQVYVDLNSNIEKMILAFEEL---RVQAENARLEMHFK---------LKEDHEKIQHLeeeyQKEVNNKENQVSEL 268
Cdd:pfam15921 175 LRKMMLSHEGVLQEIRSILVDFEEAsgkKIYEHDSMSTMHFRslgsaiskiLRELDTEISYL----KGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 269 liqSAEKENKMKdltFLLEESRDKANQLeektklqdenlkeLSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKT 348
Cdd:pfam15921 251 ---KSESQNKIE---LLLQQHQDRIEQL-------------ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 349 ISQLtevkeaqMEELNKAKTTHSFVVTELKattctleELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEV 428
Cdd:pfam15921 312 NSMY-------MRQLSDLESTVSQLRSELR-------EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 429 ELEELKNILAEDQKLLD-EKKQVEKLAEELQEKEQELTFL---LETREKEVHDLQEQVTVTKTSEQHYLKQ----VEEMK 500
Cdd:pfam15921 378 QLQKLLADLHKREKELSlEKEQNKRLWDRDTGNSITIDHLrreLDDRNMEVQRLEALLKAMKSECQGQMERqmaaIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 501 TELEKEKLKNTELTASCDMLllenKKFVQE--ASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRK 578
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEML----RKVVEEltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQEL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 579 EFIQQGDEvkcKLDKSEENARSIECEVLKKEKQMKILESKCNNL-----------------KKQVENKSKNIEELHQENK 641
Cdd:pfam15921 534 QHLKNEGD---HLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagamqveKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 642 TLKKKSSAEIKQLNAyeiKVSKLELElestKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRC 721
Cdd:pfam15921 611 ILKDKKDAKIRELEA---RVSDLELE----KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF 683
|
650 660 670
....*....|....*....|....*....|....*.
gi 166235158 722 QHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNRE 757
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
109-679 |
6.92e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 109 EAEKIKKWKVSIESELKQKENK---LQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHwcnllke 185
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLE------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 186 tcaRSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELrvQAENARLEMhfKLKEDHEKIQHLEEE---YQKEVNNKE 262
Cdd:pfam01576 86 ---EEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKL--QLEKVTTEA--KIKKLEEDILLLEDQnskLSKERKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 263 NQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIkmsmQRSMSTQKALEEDL 342
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL----QEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 343 QIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEE---- 418
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtldt 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 419 ---MTKFKNNKEVELEELKNILAEDQKLLDEkkQVEKLAEELQEKEQELTFLLET--REKEVHDLQEQVTVTKTSE-QHY 492
Cdd:pfam01576 315 taaQQELRSKREQEVTELKKALEEETRSHEA--QLQEMRQKHTQALEELTEQLEQakRNKANLEKAKQALESENAElQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 493 LKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQ-EERLLKQIENLEEKEMHLRD 571
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEaEGKNIKLSKDVSSLESQLQD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 572 ELESVRKEfIQQGDEVKCKLDKSEENARSI-----ECEVLKK--EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLK 644
Cdd:pfam01576 473 TQELLQEE-TRQKLNLSTRLRQLEDERNSLqeqleEEEEAKRnvERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQ 551
|
570 580 590
....*....|....*....|....*....|....*
gi 166235158 645 KKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMT 679
Cdd:pfam01576 552 RELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLL 586
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
111-717 |
7.43e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 7.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 111 EKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSlKLEEEIQENKDLIKENNATIHWCNLL------- 183
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE-ELRAQEAVLEETQERINRARKAAPLAahikavt 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 184 ------KETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKE 257
Cdd:TIGR00618 304 qieqqaQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 258 VNNKENQVSELLIQSAEKENKMKDLT----FLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMS------ 327
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQatidTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEkihlqe 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 328 MQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAK----------TTHSFVVTELKATTCTLEELLRTE---QQR 394
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgscihpNPARQDIDNPGPLTRRMQRGEQTYaqlETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 395 LEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDE-KKQVEKLAEELQEKEQELTFLLETREK 473
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 474 EVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEE 553
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQ 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 554 RLLKQIENLEEKEMHLRDELESV---RKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILE--------SKCNNL 622
Cdd:TIGR00618 704 TLLRELETHIEEYDREFNEIENAsssLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEvtaalqtgAELSHL 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 623 KKQVENKSKNIEELHQENKTLKKKSSAEIKQ-LNAYEIKVSKLELELESTKQRFEEmtnNYQKEIENKkisegKLLGEVE 701
Cdd:TIGR00618 784 AAEIQFFNRLREEDTHLLKTLEAEIGQEIPSdEDILNLQCETLVQEEEQFLSRLEE---KSATLGEIT-----HQLLKYE 855
|
650
....*....|....*.
gi 166235158 702 KAKATVDEAVKLQKEI 717
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKI 871
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
239-454 |
1.11e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 239 KLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLT 318
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 319 SELEDIKMSMQRsMSTQKALE--------EDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELL-- 388
Cdd:COG4942 104 EELAELLRALYR-LGRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLae 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166235158 389 -RTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLA 454
Cdd:COG4942 183 lEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-684 |
1.24e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 100 SRLYSkLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEeIQENKDLIKENNATIHw 179
Cdd:TIGR02168 288 KELYA-LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELE- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 180 cNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEEL--------RVQAENARLEMHFKLKEDHEKIQHLE 251
Cdd:TIGR02168 365 -AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLerledrreRLQQEIEELLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 252 E------EYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEktklQDENLKELSEKKDHLTSELEDIK 325
Cdd:TIGR02168 444 EleeeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER----LQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 326 MSMQR---SMSTQKALEEDLQIATKTISQ--LTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLeKNED 400
Cdd:TIGR02168 520 GILGVlseLISVDEGYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL-KNIE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 401 QLKLITVELQKKSNELE--------------------EMTKFKNNKEV------------------ELEELKNILAEDQK 442
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLRkalsyllggvlvvddldnalELAKKLRPGYRivtldgdlvrpggvitggSAKTNSSILERRRE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 443 LLDEKKQVEKLAEElqekEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLL 522
Cdd:TIGR02168 679 IEELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 523 ENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEF-----------------IQQGD 585
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneeaanlrerleslERRIA 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 586 EVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 665
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
650
....*....|....*....
gi 166235158 666 LELESTKQRFEEMTNNYQK 684
Cdd:TIGR02168 915 RELEELREKLAQLELRLEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
126-507 |
1.70e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 126 QKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATIHWCNLLKETCARSAEKTNKYEyereetr 205
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE------- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 206 qvyvDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeyqkEVNNKENQVSELLIQSAEKENKMKDLTFL 285
Cdd:TIGR02168 747 ----ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 286 LEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEdikmSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNK 365
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIE----SLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 366 AKTthsfvvtelkattcTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMtkfknnkEVELEELKNILAEDQKLLD 445
Cdd:TIGR02168 895 ELE--------------ELSEELRELESKRSELRRELEELREKLAQLELRLEGL-------EVRIDNLQERLSEEYSLTL 953
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 166235158 446 EkkqveklaeELQEKEQELTFLLETREKEVHDLQEQVT----VTKTSEQHYlKQVEEMKTELEKEK 507
Cdd:TIGR02168 954 E---------EAEALENKIEDDEEEARRRLKRLENKIKelgpVNLAAIEEY-EELKERYDFLTAQK 1009
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
122-769 |
1.85e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 122 SELKQKENKLQENRKIIEAQRKAIQELqFENEKVslKLEEEIQENKDLIKE-NNATIHWCNLLK--ETCARSAEKTNKYE 198
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRT-IELKKE--ILEKKQEELKFVIKElQQLEGSSDRILEldQELRKAERELSKAE 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 199 YEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENK 278
Cdd:TIGR00606 492 KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 279 MKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEdiKMSMQRSMSTQKALE----EDLQIATKTISQLTE 354
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE--SKEEQLSSYEDKLFDvcgsQDEESDLERLKEEIE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 355 VKEAQMEELNKAKTTHSFVVTELKA--------------TTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMT 420
Cdd:TIGR00606 650 KSSKQRAMLAGATAVYSQFITQLTDenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 421 KFKnnkEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLET---REKEVHDLQEQVTV-------TKTSEQ 490
Cdd:TIGR00606 730 GLA---PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTimpEEESAKVCLTDVTImerfqmeLKDVER 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 491 HYLKQVEEMK--------TELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENL 562
Cdd:TIGR00606 807 KIAQQAAKLQgsdldrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 563 EEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENK---SKNIEELHQE 639
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIhgyMKDIENKIQD 966
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 640 NKT-LKKKSSAEIKQLNAyeikvsKLElELESTKQRFEEMTNNYQKEIENKKISEGKLLGEV------EKAKATVDEAVK 712
Cdd:TIGR00606 967 GKDdYLKQKETELNTVNA------QLE-ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLtlrkreNELKEVEEELKQ 1039
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 166235158 713 LQKEIDlrcQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIALET 769
Cdd:TIGR00606 1040 HLKEMG---QMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
108-749 |
1.91e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 108 KEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVS---LKLEEEIQENKDLIKENNATIHWCNLLK 184
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAedaRKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 185 EtcARSAEKTNKYEYER--EETRQVYVDLNSNIEKMILA---FEELRVQAENARLEMHFKLKE--DHEKIQHLEEEYQKE 257
Cdd:PTZ00121 1168 E--ARKAEDAKKAEAARkaEEVRKAEELRKAEDARKAEAarkAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 258 VNNKENQVSELLIQSAEKENKMKDLTFLLEESR--DKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQ 335
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARkaDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 336 KALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNE----DQLKLITVELQK 411
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkaDEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 412 KSNELE--EMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSE 489
Cdd:PTZ00121 1406 KADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 490 QHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEA-----SDMALELKKHQE--DIINCKKQEE-RLLKQIEN 561
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaeeAKKADEAKKAEEkkKADELKKAEElKKAEEKKK 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 562 LEEKEMHLRDELESVRK-EFIQQGDEVKC-KLDKSEENARSIECEVLKKEKQMKIlesKCNNLKKQVENKsKNIEELHQE 639
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKaEEAKKAEEARIeEVMKLYEEEKKMKAEEAKKAEEAKI---KAEELKKAEEEK-KKVEQLKKK 1641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 640 NKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMtnnyQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDL 719
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
|
650 660 670
....*....|....*....|....*....|
gi 166235158 720 RCQHKIAEMVALMEKHKHQYDKIVEERDSE 749
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
103-689 |
2.68e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 103 YSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELqfenEKVSLKLEEEIQENKDLIKENNATIHWCNL 182
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 183 LKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHfKLKEDHEKIQHLEEEYQKEVNNKE 262
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEKQKELEQNN 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 263 NQVSELLIQSAEKENKMKDLTFLLEESRDKA--NQLEEKTKLQDENLKELSEKK---DHLTSELEDIKMSMQRSMSTQKA 337
Cdd:TIGR04523 281 KKIKELEKQLNQLKSEISDLNNQKEQDWNKElkSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSESENSE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 338 LEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTEL---KATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSN 414
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIqnqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 415 ELEEMTKFKNNKEVELEELKNILAEDQKLLDEkkqVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLK 494
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKV---LSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 495 QVEEMKTELEKEKLKNTELTASCDMLL--LENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEkemhLRDE 572
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQE----LIDQ 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 573 LESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENksknieeLHQENKTLKKKSSAEIK 652
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ-------IKETIKEIRNKWPEIIK 666
|
570 580 590
....*....|....*....|....*....|....*..
gi 166235158 653 QLNAYEIKVSKLeleLESTKQRFEEMTNNYQKEIENK 689
Cdd:TIGR04523 667 KIKESKTKIDDI---IELMKDWLKELSLHYKKYITRM 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
122-347 |
2.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 122 SELKQKENKLQENRKIIEAQRKAIQELQFENEKVSL---KLEEEIQENKDLIKENNATIhwcNLLKETCARSAEKTNKYE 198
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKqlaALERRIAALARRIRALEQEL---AALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 199 YEREETRQVYVDLNSNIEKM-ILAFEELRVQAENA-RLEMHFKLkedhekIQHLEEEYQKEVNNKENQVSELLIQSAEKE 276
Cdd:COG4942 97 AELEAQKEELAELLRALYRLgRQPPLALLLSPEDFlDAVRRLQY------LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166235158 277 NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATK 347
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
384-781 |
3.10e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 384 LEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNnkevELEELKNILAEDQKlldEKKQVEKLAEELQEKEQE 463
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEK---ELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 464 LTFLLETREKEVHDLQEQV---TVTKTSEQHYLKqVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKK 540
Cdd:PRK03918 264 LEERIEELKKEIEELEEKVkelKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 541 HQEDIINCKKQEERLLKQIENLEEKeMHLRDELESVRKEF-IQQGDEVKCKLDKSEENARSIECEVLKkekqmkiLESKC 619
Cdd:PRK03918 343 LKKKLKELEKRLEELEERHELYEEA-KAKKEELERLKKRLtGLTPEKLEKELEELEKAKEEIEEEISK-------ITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 620 NNLKKQVENKSKNIEELHQE-------NKTLKKKSSAEIkqLNAYEIKVSKLELELESTKQRFEEMTNNyQKEIENKKIS 692
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKEL--LEEYTAELKRIEKELKEIEEKERKLRKE-LRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 693 EGKLLgeveKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKI------VEERDSELGLYKNREQEQSSAKIA 766
Cdd:PRK03918 492 ESELI----KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDE 567
|
410
....*....|....*
gi 166235158 767 LETELSNIRNELVSL 781
Cdd:PRK03918 568 LEEELAELLKELEEL 582
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-804 |
3.23e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 221 AFEELRVQAENARLEMHFKLKED---HEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRdkanQLE 297
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEArkaEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDAR----KAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 298 EKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQltevKEAQMEELNKAKTTHSFVVTEL 377
Cdd:PTZ00121 1168 EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKKDAEEAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 378 KATTC-TLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEE 456
Cdd:PTZ00121 1244 KAEEErNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 457 LQEKEQELtfllETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLL--LENKKFVQEASDM 534
Cdd:PTZ00121 1324 AEEAKKKA----DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkAEEKKKADEAKKK 1399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 535 ALELKKHQEDIinckKQEERLLKQIENLEEKEMHLRDELESVRK-EFIQQGDEVKckldKSEENARSIECEVLKKEKQMK 613
Cdd:PTZ00121 1400 AEEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADEAK----KKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 614 ILESKCN-NLKKQVENKSKNIEELHQENKTLKKKSSAEIK--QLNAYEIKVSKLELELESTKQRFEEMtnnyQKEIENKK 690
Cdd:PTZ00121 1472 ADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKadEAKKAEEAKKADEAKKAEEAKKADEA----KKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 691 ISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIALETE 770
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
570 580 590
....*....|....*....|....*....|....
gi 166235158 771 LSNIRNELVSLKKQLEIEKEEKEKLKMAKENTAI 804
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
105-712 |
3.68e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQenkDLIKENNATIHWCNL-- 182
Cdd:TIGR01612 1094 KHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQIN---DLEDVADKAISNDDPee 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 183 LKETCARSAEKTNKYEYEREETRQVYVDLnSNIEKMILAFEELR----VQAENARLEMHFKLKEDHEKIQHL---EEEYQ 255
Cdd:TIGR01612 1171 IEKKIENIVTKIDKKKNIYDEIKKLLNEI-AEIEKDKTSLEEVKginlSYGKNLGKLFLEKIDEEKKKSEHMikaMEAYI 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 256 KEVNNKENQVSELLIQSAEKENKMKDLTfLLEESRDKANQLEEKTKLQDENLKELSEKKDHLT------SELEDIKMSMQ 329
Cdd:TIGR01612 1250 EDLDEIKEKSPEIENEMGIEMDIKAEME-TFNISHDDDKDHHIISKKHDENISDIREKSLKIIedfseeSDINDIKKELQ 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 330 RSMSTQKALEEDLQIATKTISQLTEVKEaqmeeLNKAKTthsfVVTELKATTCTLEELLRTEQQRLEKNEDQLKLI--TV 407
Cdd:TIGR01612 1329 KNLLDAQKHNSDINLYLNEIANIYNILK-----LNKIKK----IIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIkdDI 1399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 408 ELQKKSNELEEMTKFKNNKEVeleeLKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTK- 486
Cdd:TIGR01612 1400 NLEECKSKIESTLDDKDIDEC----IKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKd 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 487 --TSEQHYlkQVEEMKTELEKEKLKNTELTascdmlllENKKFVQEASDMALELKKHQEDIINcKKQEERLLKQIENLEE 564
Cdd:TIGR01612 1476 naTNDHDF--NINELKEHIDKSKGCKDEAD--------KNAKAIEKNKELFEQYKKDVTELLN-KYSALAIKNKFAKTKK 1544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 565 KEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKqVENKSKNIEELHQE-NKTL 643
Cdd:TIGR01612 1545 DSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEN-FENKFLKISDIKKKiNDCL 1623
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166235158 644 KKKSSAEiKQLNAYEIKVSKLELELE----STKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVK 712
Cdd:TIGR01612 1624 KETESIE-KKISSFSIDSQDTELKENgdnlNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
275-707 |
4.14e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 275 KENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKmsmqrsmSTQKALEEDLQIATKTISQLTE 354
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE-------QQIKDLNDKLKKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 355 VKEAQMEELNKAKTTHSfvvtelkattcTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELK 434
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKN-----------KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 435 NILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELT 514
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 515 ASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLE-EKEMHLRDELESVRKEFIQQGDEVKCKLDK 593
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnQKEQDWNKELKSELKNQEKKLEEIQNQISQ 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 594 SEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNayeikvsklelELESTKQ 673
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN-----------DLESKIQ 401
|
410 420 430
....*....|....*....|....*....|....
gi 166235158 674 RFEEMTNNYQKEIENKKISEGKLLGEVEKAKATV 707
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
104-778 |
5.04e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 104 SKLYKEAEKIKKWKVSIESELKQKENKLQE---NRKIIEAQRKAIQELQF---------ENEKVSLKLEEEIQENKDLIK 171
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEElklQELKLKEQAKKALEYYQlkekleleeEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 172 ENNATIHWCNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHF------KLKEDHE 245
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDdeeklkESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 246 KIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIK 325
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 326 MSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKAT------TCTLEELLRTEQQRLEKNE 399
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKllkdelELKKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 400 DQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQ 479
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 480 EQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALE-LKKHQEDIINCKKQEERLLKQ 558
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 559 IENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQ 638
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 639 ENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEG---KLLGEVEKAKATVDEAVKLQK 715
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEERektEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166235158 716 EIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIALETELSNIRNEL 778
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
493-777 |
5.81e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 5.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 493 LKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDiinckkqeerLLKQIENLEEKEMHLRDE 572
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA----------LANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 573 LESVRKEFIQ---QGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSA 649
Cdd:TIGR02168 311 LANLERQLEEleaQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 650 EIKQLNAYEIKVSKLELELESTKQRFEEMTNnyqkeiENKKISEGKLLGEVEKAKATVDEAVKLQKEIdlrcQHKIAEMV 729
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQ------EIEELLKKLEEAELKELQAELEELEEELEEL----QEELERLE 460
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 166235158 730 ALMEKHKHQYDKIVEERDSelglYKNREQEQSSAKIALETELSNIRNE 777
Cdd:TIGR02168 461 EALEELREELEEAEQALDA----AERELAQLQARLDSLERLQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-434 |
7.61e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 7.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 123 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVS--LKLEEEIQE---------NKDLIKENNATIHWCNLLKETCARSA 191
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREyegyellkeKEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 192 EKTNKYEYEREETRQVYVDLNSNIEKM----ILAFEE--LRVQAENARLEMHFKLKEDH-----EKIQHLEEEYQK---E 257
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEkiGELEAEIASLERSIAEKEREledaeERLAKLEAEIDKllaE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 258 VNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKA 337
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 338 LEEDLQiatkTISQLTEVKEAQmeelnkaktthsfvVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELE 417
Cdd:TIGR02169 418 LSEELA----DLNAAIAGIEAK--------------INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330
....*....|....*..
gi 166235158 418 EMTKFKNNKEVELEELK 434
Cdd:TIGR02169 480 RVEKELSKLQRELAEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
503-778 |
1.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 503 LEKEKLKNTELtascDMLLLENKKFvqEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQ 582
Cdd:TIGR02169 203 LRREREKAERY----QALLKEKREY--EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 583 QGDEVKcklDKSEENARSIECEVLKkekqmkileskcnnLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVS 662
Cdd:TIGR02169 277 LNKKIK---DLGEEEQLRVKEKIGE--------------LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 663 KLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDlrcqhkiaEMVALMEKHKHQYDKI 742
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE--------KLKREINELKRELDRL 411
|
250 260 270
....*....|....*....|....*....|....*....
gi 166235158 743 VEE---RDSELGLYKNREQEQSSAKIALETELSNIRNEL 778
Cdd:TIGR02169 412 QEElqrLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
278-776 |
3.79e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 278 KMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIkmsmqrsMSTQKALEEDLQIATKTISQLtevkE 357
Cdd:PRK01156 170 KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSIT-------LKEIERLSIEYNNAMDDYNNL----K 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 358 AQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNIL 437
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 438 AEDQKLLDEKKQVEKLAEELQEkeqeltflLETREKEVHDLQEQVTVTKTSE---QHYLKQVEEMKTELEKEKLKNTELT 514
Cdd:PRK01156 319 AEINKYHAIIKKLSVLQKDYND--------YIKKKSRYDDLNNQILELEGYEmdyNSYLKSIESLKKKIEEYSKNIERMS 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 515 ASCDMLLlenKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKS 594
Cdd:PRK01156 391 AFISEIL---KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 595 E-------ENARSIECEVLKKEKQMKILESKCNNLKKQVEN-KSKNIEELHQENKTLKKKSSaeikQLNAYEIKVSKLEL 666
Cdd:PRK01156 468 NhiinhynEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYlESEEINKSINEYNKIESARA----DLEDIKIKINELKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 667 ELESTKQRFEEMTNNYQKEIENKKISEGKLLG-----EVEKAKATVDEAVKLQKEIDLRCQhkiaEMVALMEKHKHQYDK 741
Cdd:PRK01156 544 KHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAvisliDIETNRSRSNEIKKQLNDLESRLQ----EIEIGFPDDKSYIDK 619
|
490 500 510
....*....|....*....|....*....|....*
gi 166235158 742 IVEERDSELGLYKNREQEQSSAKIALETELSNIRN 776
Cdd:PRK01156 620 SIREIENEANNLNNKYNEIQENKILIEKLRGKIDN 654
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
518-645 |
6.97e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 518 DMLLLENKKFVQEASDMALELKKHQEDIinckkqeERLLKQIENLEEKEMHLRDELESVRKEfIQQgDEVKCKLDKSEEN 597
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEI-------RRLEEQVERLEAEVEELEAELEEKDER-IER-LERELSEARSEER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 166235158 598 ARsiecevLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKK 645
Cdd:COG2433 459 RE------IRKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
537-718 |
1.12e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 537 ELKKHQEDIINCKKQEERLL------KQIENLEEKEMHLRDELESVRKEFIQQG-DEVKCKLDKSEENARSIECEVLKKE 609
Cdd:COG4913 236 DLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRlELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 610 KQMKILESKCNNLKKQV-ENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMtnnyQKEIEN 688
Cdd:COG4913 316 ARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL----RAEAAA 391
|
170 180 190
....*....|....*....|....*....|.
gi 166235158 689 KKISEGKLLGEVEKAKAT-VDEAVKLQKEID 718
Cdd:COG4913 392 LLEALEEELEALEEALAEaEAALRDLRRELR 422
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
286-449 |
2.20e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 286 LEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNK 365
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 366 AKTTHSFVVTELKATTCT------------------LEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKE 427
Cdd:COG3883 98 SGGSVSYLDVLLGSESFSdfldrlsalskiadadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180
....*....|....*....|..
gi 166235158 428 VELEELKNILAEDQKLLDEKKQ 449
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLA 199
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
554-709 |
2.75e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 554 RLLKQIENLEEKEMHLRDELESVRKEFiqqgDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLK--KQVENKSK 631
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 632 NIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDE 709
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
102-580 |
2.97e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 102 LYSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEkvslKLEEEIQENKDLIKEnnatihwcn 181
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE----ELEEELEELEAELEE--------- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 182 llketcARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENarlemhfkLKEDHEKIQHLEEEYQKevnnK 261
Cdd:COG4717 114 ------LREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE--------LRELEEELEELEAELAE----L 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 262 ENQVSELLIQ-SAEKENKMKDLTflleesrDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEE 340
Cdd:COG4717 176 QEELEELLEQlSLATEEELQDLA-------EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 341 DLQIAtkTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTE---QQRLEKNEDQLKLITVELQKKSNELE 417
Cdd:COG4717 249 RLLLL--IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKaslGKEAEELQALPALEELEEEELEELLA 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 418 EMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQhYLKQVE 497
Cdd:COG4717 327 ALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQE-LKEELE 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 498 EMKTELEKEKLKNTELTASCDMLLLEnkkfvQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKE--MHLRDELES 575
Cdd:COG4717 406 ELEEQLEELLGELEELLEALDEEELE-----EELEELEEELEELEEELEELREELAELEAELEQLEEDGelAELLQELEE 480
|
....*
gi 166235158 576 VRKEF 580
Cdd:COG4717 481 LKAEL 485
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
202-314 |
3.23e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 202 EETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDH-------EKIQHLEEEYQKEVNNKENQVSELLIQS-A 273
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEklkeeleEKKEKLQEEEDKLLEEAEKEAQQAIKEAkK 584
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 166235158 274 EKENKMKDLTFL--LEESRDKANQLEEKTKLQDENLKELSEKK 314
Cdd:PRK00409 585 EADEIIKELRQLqkGGYASVKAHELIEARKRLNKANEKKEKKK 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
286-482 |
4.05e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 286 LEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNK 365
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 366 AKTTHSFVVTEL--KATTCTLEELLRTE--------QQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKN 435
Cdd:COG4942 102 QKEELAELLRALyrLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 166235158 436 ILAEDQK-LLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQV 482
Cdd:COG4942 182 ELEEERAaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
535-711 |
4.23e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 535 ALELKKHQEDIINCKKQEERLLKQIENLEEKE--MHLRDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQM 612
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEeiHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 613 KILESKCNNLKKQVENKSKNIEELHQE-NKTLKkkssaEIKQLNAYEIKvsklELELESTKQRFEEMTNNYQKEIENKKI 691
Cdd:PRK12704 113 EKKEKELEQKQQELEKKEEELEELIEEqLQELE-----RISGLTAEEAK----EILLEKVEEEARHEAAVLIKEIEEEAK 183
|
170 180
....*....|....*....|
gi 166235158 692 SEGKllgevEKAKATVDEAV 711
Cdd:PRK12704 184 EEAD-----KKAKEILAQAI 198
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
255-720 |
6.25e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 255 QKEVNNKENQVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSmqrsmst 334
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA------- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 335 qkalEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTE---LKATTCTLEELLRTEQQRLEKNEDQLKLITvELQK 411
Cdd:PRK01156 262 ----ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDyfkYKNDIENKKQILSNIDAEINKYHAIIKKLS-VLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 412 KSNELEEMTKFKNNKEVELEELKNILAEDQKLLDE----KKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKT 487
Cdd:PRK01156 337 DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieslKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINV 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 488 SEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENK-------------------------KFVQEASDMALELKKHQ 542
Cdd:PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgttlgeeksnhiinhynekksRLEEKIREIEIEVKDID 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 543 EDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEE---NARSIECEVLKKEKqmkileSKC 619
Cdd:PRK01156 497 EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEiknRYKSLKLEDLDSKR------TSW 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 620 NNLKKQVENksKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQ---KEIENKKISEGKL 696
Cdd:PRK01156 571 LNALAVISL--IDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNnkyNEIQENKILIEKL 648
|
490 500
....*....|....*....|....*..
gi 166235158 697 LGEVEKAK---ATVDEAVKLQKEIDLR 720
Cdd:PRK01156 649 RGKIDNYKkqiAEIDSIIPDLKEITSR 675
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
108-563 |
1.31e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 108 KEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAtihwcnllKETC 187
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--------LLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 188 ARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEmhfkLKEDHEKIQHLEEEYQKEVNNKENQVSE 267
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE----EEEALEEAAEEEAELEEEEEALLELLAE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 268 LLIQSAEKENKMKDLtfLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKALE-------- 339
Cdd:COG1196 468 LLEEAALLEAALAEL--LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaala 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 340 --------EDLQIATKTISQLTEVKEAQMEEL--NKAKTTHSFVVTELKATTC----TLEELLRTEQQRLEKNEDQLKLI 405
Cdd:COG1196 546 aalqnivvEDDEVAAAAIEYLKAAKAGRATFLplDKIRARAALAAALARGAIGaavdLVASDLREADARYYVLGDTLLGR 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 406 TVELQKKSNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVT 485
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 486 KTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIincKKQEERLLKQIENLE 563
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIEALG 780
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
210-440 |
1.58e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 210 DLNSNIEKMILAFEELRvqaenarlEMHFKLKEDHEKIQHLE------EEYQKEVNNKENQVSELLIQSAEKENKMKDLt 283
Cdd:COG4913 222 DTFEAADALVEHFDDLE--------RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRLEL- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 284 flLEESRDKANqlEEKTKLQDEnLKELSEKKDHLTSELEDIKMSMQRSMSTQKA-LEEDLQIATKTISQLTEVKEAQMEE 362
Cdd:COG4913 293 --LEAELEELR--AELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 363 LNKAK-----TTHSFV--VTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKN 435
Cdd:COG4913 368 LAALGlplpaSAEEFAalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
....*
gi 166235158 436 ILAED 440
Cdd:COG4913 448 ALAEA 452
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
105-506 |
1.63e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSL-KLEEEIQENKDLIKENNATIhwcnll 183
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcGRELTEEHRKELLEEYTAEL------ 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 184 ketcARSAEKTNKYEYEREETRQVYVdlnsNIEKMILAFEELrvqaenarlemhFKLKEDHEKIQHLEEEYQKEVNNKEN 263
Cdd:PRK03918 462 ----KRIEKELKEIEEKERKLRKELR----ELEKVLKKESEL------------IKLKELAEQLKELEEKLKKYNLEELE 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 264 QVSELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEdikmsmQRSMSTQKALEEDLQ 343
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE------ELGFESVEELEERLK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 344 IATKTISQLTEVK------EAQMEELNKAKTTHSFVVTELKATTCTLEElLRTEQQRLEKNEDQlklitVELQKKSNELE 417
Cdd:PRK03918 596 ELEPFYNEYLELKdaekelEREEKELKKLEEELDKAFEELAETEKRLEE-LRKELEELEKKYSE-----EEYEELREEYL 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 418 EMTKFKNNKEVELEELKNILAEDQKLLDE-KKQVEKLAEELQEKEqeltfLLETREKEVHDLQEQVTVTKTS-EQHYLKQ 495
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKlKEELEEREKAKKELE-----KLEKALERVEELREKVKKYKALlKERALSK 744
|
410
....*....|.
gi 166235158 496 VEEMKTELEKE 506
Cdd:PRK03918 745 VGEIASEIFEE 755
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
468-677 |
2.35e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 468 LETREKEVHDLQEQVTVTKTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIIN 547
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 548 CKKQEERLLKQIENLEEKEmhlrDELESVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVE 627
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDA----DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 166235158 628 NKSKNIEELHQENKTLKKkssaeikqlnayeiKVSKLELELESTKQRFEE 677
Cdd:PRK02224 409 NAEDFLEELREERDELRE--------------REAELEATLRTARERVEE 444
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
116-748 |
2.90e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 116 WKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKV-----SLKLEEEIQENKDLIKENNATIHwcnlLKETCARS 190
Cdd:TIGR00606 163 WPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVqehqmELKYLKQYKEKACEIRDQITSKE----AQLESSRE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 191 AEKTNKYEYEREETRQVYVDLNSN----IEKMILAFEELRVQAENARLEMHFKLKE----DHEKIQHLEEEYQKEVNNKE 262
Cdd:TIGR00606 239 IVKSYENELDPLKNRLKEIEHNLSkimkLDNEIKALKSRKKQMEKDNSELELKMEKvfqgTDEQLNDLYHNHQRTVREKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 263 nqvsELLIQSAEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKM--SMQRSMSTQKALEE 340
Cdd:TIGR00606 319 ----RELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldGFERGPFSERQIKN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 341 DLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELEEMT 420
Cdd:TIGR00606 395 FHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 421 KFKnnkevelEELKNILAeDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEqvtvtKTSEQHYLKQVEEMK 500
Cdd:TIGR00606 475 ELD-------QELRKAER-ELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ-----LNHHTTTRTQMEMLT 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 501 TELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEF 580
Cdd:TIGR00606 542 KDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 581 IQQGDEV--KCKLDKSEENARSIECEVLKKEKQMKILESKCNNLkkqvenkSKNIEELHQENKTLKKKSSAEIKQLNAYE 658
Cdd:TIGR00606 622 SSYEDKLfdVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVY-------SQFITQLTDENQSCCPVCQRVFQTEAELQ 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 659 IKVSKLELELESTKQRFEEMtnnyQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQH---KIAEMVALMEKH 735
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKST----ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKvnrDIQRLKNDIEEQ 770
|
650
....*....|...
gi 166235158 736 KHQYDKIVEERDS 748
Cdd:TIGR00606 771 ETLLGTIMPEEES 783
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
122-564 |
3.09e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 122 SELKQKENKLQENRKIIEAQRKaIQELQFENEK------VSLKLEEEIQENKDLIKENnatihwcnLLKETCARSAEKTN 195
Cdd:COG5022 862 SLLKKETIYLQSAQRVELAERQ-LQELKIDVKSisslklVNLELESEIIELKKSLSSD--------LIENLEFKTELIAR 932
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 196 kyeyereetrqvYVDLNSNIEKMILAFEELRVQAENArlemhfKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEK 275
Cdd:COG5022 933 ------------LKKLLNNIDLEEGPSIEYVKLPELN------KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSEL 994
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 276 ENKMKDLTFLLEESRDkanqLEEKTKLqdenLKELSEKKDHLTSElEDIKMSMQRSMSTQKALEEDLQIATKTISQLtev 355
Cdd:COG5022 995 KNFKKELAELSKQYGA----LQESTKQ----LKELPVEVAELQSA-SKIISSESTELSILKPLQKLKGLLLLENNQL--- 1062
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 356 kEAQMEELNKAKTTHSFVVTELKATTCTLEELLRTEQQRLEKNEDQLKL------ITVELQKKSNELEEMTKFKNNKEVE 429
Cdd:COG5022 1063 -QARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKpanvlqFIVAQMIKLNLLQEISKFLSQLVNT 1141
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 430 LEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFllETREKEVHDLQEQVTVtktseqhYLKQVEEMKTELEKEKLK 509
Cdd:COG5022 1142 LEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS--EKRLYQSALYDEKSKL-------SSSEVNDLKNELIALFSK 1212
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 166235158 510 NTELtascDMLLLENKKFVQEASDMALELKKHQE----DIINCKKQEERLLKQIENLEE 564
Cdd:COG5022 1213 IFSG----WPRGDKLKKLISEGWVPTEYSTSLKGfnnlNKKFDTPASMSNEKLLSLLNS 1267
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
493-697 |
3.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 493 LKQVEEMKTELEKEKLKNTELtascdmllleNKKFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMHLRDE 572
Cdd:COG4717 48 LERLEKEADELFKPQGRKPEL----------NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 573 LESVRK-----EFIQQGDEVKCKLDKSEENARSIEcevlKKEKQMKILESKCNNLKKQVENKSKNIEEL--------HQE 639
Cdd:COG4717 118 LEKLEKllqllPLYQELEALEAELAELPERLEELE----ERLEELRELEEELEELEAELAELQEELEELleqlslatEEE 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 166235158 640 NKTLKKKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLL 697
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLL 251
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
253-617 |
3.50e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 253 EYQKEVNNKENQvselliqsaEKENKMKDlTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSM 332
Cdd:pfam17380 279 QHQKAVSERQQQ---------EKFEKMEQ-ERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 333 STQKALEEDlqiatktisqltevKEAQMEELNKaktthsfvvTELKATTCTLEELLRTEQQRLEKNEdqlklitvelqKK 412
Cdd:pfam17380 349 ELERIRQEE--------------RKRELERIRQ---------EEIAMEISRMRELERLQMERQQKNE-----------RV 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 413 SNELEEMTKFKNNKEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTflLETREKEVHDLQEQVTVTKTSEQHY 492
Cdd:pfam17380 395 RQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERARE--MERVRLEEQERQQQVERLRQQEEER 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 493 LKQVEEMKTELEKEKLKNTELTASCDMLLLENKKFVQEASDMALELKKHQEDIINC-KKQEERLLKQIENLEEKEMHLRD 571
Cdd:pfam17380 473 KRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAiYEEERRREAEEERRKQQEMEERR 552
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 166235158 572 ELEsvrkEFIQQGDEVKCKLDkSEENARSIECEVLKKEKQMKILES 617
Cdd:pfam17380 553 RIQ----EQMRKATEERSRLE-AMEREREMMRQIVESEKARAEYEA 593
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
208-367 |
3.54e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 208 YVDLNSNIEKMILAFEELRVQ-AENARLEM----HFKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMKDL 282
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKRiLEEAKKEAeaikKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 283 TFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSE----LEDI-KMSMQ--RSMSTQKALEEDLQIATKTISQLTEv 355
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEqlqeLERIsGLTAEeaKEILLEKVEEEARHEAAVLIKEIEE- 180
|
170
....*....|..
gi 166235158 356 kEAQMEELNKAK 367
Cdd:PRK12704 181 -EAKEEADKKAK 191
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
543-781 |
4.94e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 543 EDIIN-CKKQEERLLKQIEnLEEKEMHLRDELESVRKE-FIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCN 620
Cdd:TIGR02168 192 EDILNeLERQLKSLERQAE-KAERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 621 NLKKQVENKSKNIEELHQEnktlkkkssaeikqLNAYEIKVSKLELELESTKQRFEEMTNNyQKEIENKKISEGKLLGEV 700
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKE--------------LYALANEISRLEQQKQILRERLANLERQ-LEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 701 EKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDselglyknreqEQSSAKIALETELSNIRNELVS 780
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE-----------TLRSKVAQLELQIASLNNEIER 404
|
.
gi 166235158 781 L 781
Cdd:TIGR02168 405 L 405
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
105-449 |
5.82e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 105 KLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSL----KLEEEIQENKDLIKENNATIH 178
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELreRFGDAPVDLgnaeDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 179 WC------------NLLKE----TC-------------ARSAEKTNKYEYEREETRQVYVDLNSNIEKMilafEELRVQA 229
Cdd:PRK02224 433 ATlrtarerveeaeALLEAgkcpECgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERA----EDLVEAE 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 230 enARLEmhfKLKEDHEKIQHLEEEYQKEVNNKENQVSELLIQSAEKENKMkdltfllEESRDKANQLEEKTKLQDENLKE 309
Cdd:PRK02224 509 --DRIE---RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA-------EEKREAAAEAEEEAEEAREEVAE 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 310 LSEKKDHLTSELEDIKmSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKattctlEELLR 389
Cdd:PRK02224 577 LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD------EARIE 649
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 390 TEQQRLEKNEDQLKLITVELQKKSNELEEMTKFKNNKEVELEELKNiLAEDQKLLDEKKQ 449
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE-LRERREALENRVE 708
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
86-251 |
5.99e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 86 EGVNDSDFENSEPMSRLYsklyKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQE 165
Cdd:pfam17380 449 ERVRLEEQERQQQVERLR----QQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 166 NKDLIKEnnatihwcnllkETCARSAEKTNKYEYEREETRQVYvdlnsniEKMILAFEEL-RVQAENARLEMHFKLKEDH 244
Cdd:pfam17380 525 RQKAIYE------------EERRREAEEERRKQQEMEERRRIQ-------EQMRKATEERsRLEAMEREREMMRQIVESE 585
|
....*..
gi 166235158 245 EKIQHLE 251
Cdd:pfam17380 586 KARAEYE 592
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-777 |
6.47e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 438 AEDQKLLDE------------------KKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVTKTSEQHYLKQVEEM 499
Cdd:TIGR02169 170 RKKEKALEEleeveenierldliidekRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 500 KTELEKeklknteLTASCDMLLLENKKFVQEASDMALELKKHQED-IINCKKQEERLLKQIENLEEKEMHLRDELESVRK 578
Cdd:TIGR02169 250 EEELEK-------LTEEISELEKRLEEIEQLLEELNKKIKDLGEEeQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 579 EFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILES---KCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLN 655
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAElkeELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 656 AYEIKVSKLELELESTKQRFEEMtNNYQKEIENKkisegklLGEVEKAKATVDEAVKLQKEidlrcqhKIAEMVALMEKH 735
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADL-NAAIAGIEAK-------INELEEEKEDKALEIKKQEW-------KLEQLAADLSKY 467
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 166235158 736 KHQYDKIVEErdselglYKNREQEQSSAK---IALETELSNIRNE 777
Cdd:TIGR02169 468 EQELYDLKEE-------YDRVEKELSKLQrelAEAEAQARASEER 505
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
278-622 |
7.58e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 278 KMKDLTFL-LEESRDKAnqleeKTKLQDENLKELSEKKDhltsELEDIKMSMQRSMSTQkaleedlqiATKTISQLTEVk 356
Cdd:PRK05771 5 RMKKVLIVtLKSYKDEV-----LEALHELGVVHIEDLKE----ELSNERLRKLRSLLTK---------LSEALDKLRSY- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 357 eaqMEELNKAKTTHSFVVTElkattcTLEELLRTEQQRLEKNEDQLKlitvELQKKSNELEEMTKFKNNKEVELEELKNI 436
Cdd:PRK05771 66 ---LPKLNPLREEKKKVSVK------SLEELIKDVEEELEKIEKEIK----ELEEEISELENEIKELEQEIERLEPWGNF 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 437 LAEDQKLLDEKKQVEKLAEELQEKEqeltflletREKEVHDLQEQVTVTKTSEQHYL-------KQVEEMKTELEKEKLK 509
Cdd:PRK05771 133 DLDLSLLLGFKYVSVFVGTVPEDKL---------EELKLESDVENVEYISTDKGYVYvvvvvlkELSDEVEEELKKLGFE 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 510 NTELtascdmlllENKKFVQEAsdmaleLKKHQEDIINCKKQEERLLKQIENLEEKE----MHLRDELESVRKEFiqqgd 585
Cdd:PRK05771 204 RLEL---------EEEGTPSEL------IREIKEELEEIEKERESLLEELKELAKKYleelLALYEYLEIELERA----- 263
|
330 340 350
....*....|....*....|....*....|....*..
gi 166235158 586 EVKCKLDKSeENARSIECEVLkkEKQMKILESKCNNL 622
Cdd:PRK05771 264 EALSKFLKT-DKTFAIEGWVP--EDRVKKLKELIDKA 297
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
569-788 |
7.63e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 569 LRDELESVRKE-FIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKS 647
Cdd:COG1196 218 LKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 648 SAEIKQLNAYEIKVSKLELELESTKQRFEEMTN---NYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHK 724
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEeleELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166235158 725 IAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKIALETELSNIRNELVSLKKQLEIE 788
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
97-379 |
8.11e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 97 EPMSRLYSKLYKEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQ-----FENEKVSL--KLEEEIQENKDL 169
Cdd:pfam15921 572 ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEarvsdLELEKVKLvnAGSERLRAVKDI 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 170 IKENNATIhwcNLLKETCARSAEKTNKYEYEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQh 249
Cdd:pfam15921 652 KQERDQLL---NEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK- 727
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 250 LEEEYQKEVNNKENQVSELliqsaekENKMKdltfLLEESRDKANQ-----LEEKTKLQDEnLKELSEKKDHLTSELEDI 324
Cdd:pfam15921 728 VAMGMQKQITAKRGQIDAL-------QSKIQ----FLEEAMTNANKekhflKEEKNKLSQE-LSTVATEKNKMAGELEVL 795
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 166235158 325 KMSMQRSMSTQKALEEDLQIATKTISQLTEVKEAQMEELNKAKTTHSFVVTELKA 379
Cdd:pfam15921 796 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQG 850
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
110-772 |
9.98e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.03 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 110 AEKIKKWKVSIESELKQKENKLQENRKII-------EAQRKAIQELQFENEKVSLKLEEEIQ----ENKDLIKENNATIH 178
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKImkldneiKALKSRKKQMEKDNSELELKMEKVFQgtdeQLNDLYHNHQRTVR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 179 WCNLLKETCARSAEKTNKyeyEREETRQVYVDLNSNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYQKEV 258
Cdd:TIGR00606 316 EKERELVDCQRELEKLNK---ERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQI 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 259 NNKENQVSELLIQSAEKENK-MKDLTFLLEESRDKANQLEEKTKLQDENLKELSEKKDHLTSELEDIKMSMQRSMSTQKA 337
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQlCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 338 LEEDLQIATKTISQLTEVKEAQMEELNKAKtthsfvVTELKATTCTLEELLRTEQQRLEKNEDQLKLITVELQKKSNELE 417
Cdd:TIGR00606 473 ILELDQELRKAERELSKAEKNSLTETLKKE------VKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 418 EMTKFKNNKEVELEELKNILAEdqklLDEKKQVEKLAEELQEKEQELtflletrEKEVHDLQEQVTVTKTSEQHYLKQVE 497
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGY----FPNKKQLEDWLHSKSKEINQT-------RDRLAKLNKELASLEQNKNHINNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 498 EMKTELEKEKLKNTELTASCDmlllenkkFVQEASDMALELKKHQEDIINCKKQEERLLKQIENLEEKEMH---LRDELE 574
Cdd:TIGR00606 616 SKEEQLSSYEDKLFDVCGSQD--------EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVF 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 575 SVRKEFIQQGDEVKCKLDKSEENARSIECEVLKKEKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQL 654
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166235158 655 NAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAKATVDEAVKLQKEIDLRCQHKIAEMVALMEK 734
Cdd:TIGR00606 768 EEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIEL 847
|
650 660 670
....*....|....*....|....*....|....*...
gi 166235158 735 HKhqydKIVEERDSELGLYKNREQEQSSAKIALETELS 772
Cdd:TIGR00606 848 NR----KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881
|
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