|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleic_acid_bd |
pfam13820 |
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ... |
48-189 |
3.66e-59 |
|
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Pssm-ID: 463988 Cd Length: 143 Bit Score: 200.35 E-value: 3.66e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 48 IFVAFKGNIDDkdFKWKLDAILKNVPNLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSV 127
Cdd:pfam13820 1 TFLAVKGNLRM--FQEKLDSIRENVAELLRTEKSKLKVRKVEPWNSVRVTFSIPREAALRLRLLAQHNDPRLRDLGILSV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2238345164 128 QIEGEGAINLALG---QNRSQDVRMnGPVASGNSVRMEAGFPMASGPGLIRMTSPAAVMTPQGGN 189
Cdd:pfam13820 79 QIEGEGPINLTLAtmvQNPADDIIL-GCSTQLNSQRAEQGWTMLSALGLISDALPLHLRLAESGE 142
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
387-809 |
7.17e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 67.73 E-value: 7.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 387 QQASQAHTNFPQMSNPGQFTAPQMKGLQGGPSRVPTPlqqPHLTNKSPASSPSSFQQGSPAssptVNQTQQQMGPRPPQN 466
Cdd:pfam09606 60 QQQPQGGQGNGGMGGGQQGMPDPINALQNLAGQGTRP---QMMGPMGPGPGGPMGQQMGGP----GTASNLLASLGRPQM 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 467 NPLSQGFQQPVSSPGRnpmVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPnfMQGQVPSTTAAt 546
Cdd:pfam09606 133 PMGGAGFPSQMSRVGR---MQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGGQQGP--MGGQMPPQMGV- 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 547 PGNSGALQLQaNQNVQHAGGQGAGPPQNQMQVSHGPPNMMQPSLMGIHGN-----INNQQAGSSGVPQVTLGNMQGQPQQ 621
Cdd:pfam09606 207 PGMPGPADAG-AQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSqlgmgINQMQQMPQGVGGGAGQGGPGQPMG 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 622 GPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPh 701
Cdd:pfam09606 286 PPGQQPGAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 702 nqmMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQ 775
Cdd:pfam09606 365 ---MQRGQPGMMSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQ 440
|
410 420 430
....*....|....*....|....*....|....
gi 2238345164 776 QGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHND 809
Cdd:pfam09606 441 RTIGQDSPGGSLNTPGQSAVNSPLNPQEEQLYRE 474
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
625-776 |
1.85e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.81 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 625 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 704
Cdd:TIGR01628 369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2238345164 705 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMvQFTGQMSGQMLPQQ 776
Cdd:TIGR01628 440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQN-KKLAQVLASATPQM 504
|
|
| KAR9 |
pfam08580 |
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ... |
1090-1326 |
3.09e-04 |
|
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.
Pssm-ID: 430088 [Multi-domain] Cd Length: 684 Bit Score: 45.98 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1090 PASVPPSPD-KQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPE-ASGSEV---PSVAGGPNNMPShLVVSQN 1164
Cdd:pfam08580 430 PGSSPPSSViMTPVNKGSKTPSSRRGSSFDFGSSSERVINSKLRRESKLPQiASTLKQtkrPSKIPRASPNHS-GFLSTP 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1165 QLMMTGPKPGPSplsATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPP 1235
Cdd:pfam08580 509 SNTATSETPTPA---LRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDK 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1236 STEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNrgfdqqglNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVV 1315
Cdd:pfam08580 586 SRSPAPTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVS 657
|
250
....*....|.
gi 2238345164 1316 VNSGKQSNPGT 1326
Cdd:pfam08580 658 SGLGPQTRPGT 668
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1173-1810 |
7.41e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 7.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1173 PGPSPLSATQGATPQQP-PVNSLPSSHGH-HFPNvaAPTQTSRPKTP--------NRASPRPYYPQTPNNRPPSTEPSEI 1242
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPaPRPSEPAVTSRaRRPD--APPQSARPRAPvddrgdprGPAPPSPLPPDTHAPDPPPPSPSPA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1243 SLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPttlkaigQAPSNLTITNPPnfAAPQAhkldsvVVNSGKQS 1322
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA-------QASSPPQRPRRR--AARPT------VGSLTSLA 2699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1323 NPGTTKRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQnmelprnVLVGPTPLANPPLPGSFPNNTGl 1402
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA-------TPGGPARPARPPTTAGPPAPAP- 2771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1403 nPQNPTVPVPAMGTVlednkesvnipqdsdcqnaqgrkeqvnteLKVVPTQEAKMAVPEDQSKKDGQPLDPNKLPSVEEN 1482
Cdd:PHA03247 2772 -PAAPAAGPPRRLTR-----------------------------PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1483 KnlmSPAMREAPTSLSQlldnsGAPNVTIKPPGLTDLEVTPPVVSGEDLRKAsviptlqdPPSKEPSTSLSSPHSSePCS 1562
Cdd:PHA03247 2822 A---SPAGPLPPPTSAQ-----PTAPPPPPGPPPPSLPLGGSVAPGGDVRRR--------PPSRSPAAKPAAPARP-PVR 2884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1563 TLARSELSEVSSNTA-PSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVTMPNVGN 1641
Cdd:PHA03247 2885 RLARPAVSRSTESFAlPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1642 KVMVSeGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPS-TIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSApvTP 1720
Cdd:PHA03247 2965 GALVP-GRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRvSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDA--DS 3041
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1721 NVPSSSPAPNIQTGRPLvlssratpvqlpSPPCTSSPVVAPNPsvqqvkelNPDEASPQTNTSAdQSTLPPSQPTTVVSP 1800
Cdd:PHA03247 3042 LFDSDSERSDLEALDPL------------PPEPHDPFAHEPDP--------ATPEAGARESPSS-QFGPPPLSANAALSR 3100
|
650
....*....|
gi 2238345164 1801 LLTNSPGSSA 1810
Cdd:PHA03247 3101 RYVRSTGRSA 3110
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1061-1282 |
1.62e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1061 PPRGPLNPDSQRMPVQQSgnVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPEA 1140
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1141 ---SGSEVPSVAGGPNNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSshghhfPNVAAPT 1209
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLAR------PAVSRST 2895
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2238345164 1210 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLnasiaglfPPQINIPLPPRPNLNRGFDQQGLNP 1282
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP--------PPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleic_acid_bd |
pfam13820 |
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ... |
48-189 |
3.66e-59 |
|
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Pssm-ID: 463988 Cd Length: 143 Bit Score: 200.35 E-value: 3.66e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 48 IFVAFKGNIDDkdFKWKLDAILKNVPNLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSV 127
Cdd:pfam13820 1 TFLAVKGNLRM--FQEKLDSIRENVAELLRTEKSKLKVRKVEPWNSVRVTFSIPREAALRLRLLAQHNDPRLRDLGILSV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2238345164 128 QIEGEGAINLALG---QNRSQDVRMnGPVASGNSVRMEAGFPMASGPGLIRMTSPAAVMTPQGGN 189
Cdd:pfam13820 79 QIEGEGPINLTLAtmvQNPADDIIL-GCSTQLNSQRAEQGWTMLSALGLISDALPLHLRLAESGE 142
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
387-809 |
7.17e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 67.73 E-value: 7.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 387 QQASQAHTNFPQMSNPGQFTAPQMKGLQGGPSRVPTPlqqPHLTNKSPASSPSSFQQGSPAssptVNQTQQQMGPRPPQN 466
Cdd:pfam09606 60 QQQPQGGQGNGGMGGGQQGMPDPINALQNLAGQGTRP---QMMGPMGPGPGGPMGQQMGGP----GTASNLLASLGRPQM 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 467 NPLSQGFQQPVSSPGRnpmVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPnfMQGQVPSTTAAt 546
Cdd:pfam09606 133 PMGGAGFPSQMSRVGR---MQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGGQQGP--MGGQMPPQMGV- 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 547 PGNSGALQLQaNQNVQHAGGQGAGPPQNQMQVSHGPPNMMQPSLMGIHGN-----INNQQAGSSGVPQVTLGNMQGQPQQ 621
Cdd:pfam09606 207 PGMPGPADAG-AQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSqlgmgINQMQQMPQGVGGGAGQGGPGQPMG 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 622 GPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPh 701
Cdd:pfam09606 286 PPGQQPGAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 702 nqmMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQ 775
Cdd:pfam09606 365 ---MQRGQPGMMSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQ 440
|
410 420 430
....*....|....*....|....*....|....
gi 2238345164 776 QGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHND 809
Cdd:pfam09606 441 RTIGQDSPGGSLNTPGQSAVNSPLNPQEEQLYRE 474
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
289-754 |
1.80e-08 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 59.64 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 289 QQQQLQTRPLQQHQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQ-GSLGTMTTNQGWKKAP--------LPSPM 359
Cdd:pfam09606 64 QGGQGNGGMGGGQQGMPDPINALQNLAGQGTRPQMMGPMGPGPGGPMGQQmGGPGTASNLLASLGRPqmpmggagFPSQM 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 360 QAQLQARPSLATvqtpsHPPPPYPFGSQQASQAHTNFPQMSnPGQFTAPQMKGLQGGPSRVPTPLQ------------QP 427
Cdd:pfam09606 144 SRVGRMQPGGQA-----GGMMQPSSGQPGSGTPNQMGPNGG-PGQGQAGGMNGGQQGPMGGQMPPQmgvpgmpgpadaGA 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 428 HLTNKSPASSPSSFQQGSPASSPTVNQTQQQMgpRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMvmqqqppnqgp 507
Cdd:pfam09606 218 QMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQ--QQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPM----------- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 508 qslhPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQNVQHAGGQGAGPPQNQMqvshGPPNMMQ 587
Cdd:pfam09606 285 ----GPPGQQPGAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHL----ETWNPGN 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 588 PSLMGIHGNINNQQAGSSGVPQVTLGNMQgqpQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQM 667
Cdd:pfam09606 357 FGGLGANPMQRGQPGMMSSPSPVPGQQVR---QVTPNQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQM 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 668 MVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQsnvMPGPA 747
Cdd:pfam09606 434 SQQPAQQRTIGQDSPGGSLNTPGQSAVNSPLNPQEEQLYREKYRQLTKYIEPLKRMIAKMENDPGDIDKMNK---MKRLL 510
|
....*..
gi 2238345164 748 QIMRGPT 754
Cdd:pfam09606 511 EILSNPS 517
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
440-719 |
3.83e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.43 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 440 SFQQGSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSpGRNPMVQQGNVPpnfmvmqqqppnqgpqSLHP--GLGGM 517
Cdd:pfam09770 103 NRQQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRT-GYEKYKEPEPIP----------------DLQVdaSLWGV 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 518 PkrlPPGFSAGQANPnfmqgQVPSTTAATPGNS----------GALQLQANQNVQHAGGQGAGPPQNQMQVSHGPPNMMQ 587
Cdd:pfam09770 166 A---PKKAAAPAPAP-----QPAAQPASLPAPSrkmmsleeveAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 588 PSlmgihgninnqqagssgvpqvtlgNMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQM 667
Cdd:pfam09770 238 PQ------------------------IQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPP 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2238345164 668 MVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAP-HNQMMGPQGQVLLQQNPMI 719
Cdd:pfam09770 294 PVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPaPAHQAHRQQGSFGRQAPII 346
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
625-776 |
1.85e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.81 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 625 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 704
Cdd:TIGR01628 369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2238345164 705 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMvQFTGQMSGQMLPQQ 776
Cdd:TIGR01628 440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQN-KKLAQVLASATPQM 504
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
618-761 |
2.31e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.42 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 618 QPQQGPPSQ-LMGMHQQIVPSQGQMAQQQGTLNPQNPMilsraqLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQ 696
Cdd:TIGR01628 384 QLPMGSPMGgAMGQPPYYGQGPQQQFNGQPLGWPRMSM------MPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKP 457
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2238345164 697 MMAPHNQMMGPQGQVLLQQNPmieqimtnQMQGNKAQFNSqnqsnvMPGPAQIMRGPTPNMQGNM 761
Cdd:TIGR01628 458 PMQPVMYPPNYQSLPLSQDLP--------QPQSTASQGGQ------NKKLAQVLASATPQMQKQV 508
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
632-815 |
9.41e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 47.72 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 632 QQIVPSQGQMAQQQGTLNPQNPMILS--------RAQL-MPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHN 702
Cdd:pfam09770 170 AAAPAPAPQPAAQPASLPAPSRKMMSleeveaamRAQAkKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQ 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 703 QMMGPQGQV------LLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMrgPTPNMQGNMVQftgQMSGQMLPQQ 776
Cdd:pfam09770 250 PQQPQQHPGqghpvtILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQIL--QNPNRLSAARV---GYPQNPQPGV 324
|
170 180 190
....*....|....*....|....*....|....*....
gi 2238345164 777 GPVNNSPSQvmgiqgqvlRPPGPSPHMAQQHNDPVTTAN 815
Cdd:pfam09770 325 QPAPAHQAH---------RQQGSFGRQAPIITHPQQLAQ 354
|
|
| KAR9 |
pfam08580 |
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ... |
1090-1326 |
3.09e-04 |
|
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.
Pssm-ID: 430088 [Multi-domain] Cd Length: 684 Bit Score: 45.98 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1090 PASVPPSPD-KQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPE-ASGSEV---PSVAGGPNNMPShLVVSQN 1164
Cdd:pfam08580 430 PGSSPPSSViMTPVNKGSKTPSSRRGSSFDFGSSSERVINSKLRRESKLPQiASTLKQtkrPSKIPRASPNHS-GFLSTP 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1165 QLMMTGPKPGPSplsATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPP 1235
Cdd:pfam08580 509 SNTATSETPTPA---LRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDK 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1236 STEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNrgfdqqglNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVV 1315
Cdd:pfam08580 586 SRSPAPTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVS 657
|
250
....*....|.
gi 2238345164 1316 VNSGKQSNPGT 1326
Cdd:pfam08580 658 SGLGPQTRPGT 668
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
461-662 |
6.59e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 45.03 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 461 PRPPQNNPLSQGFQQPVSSPGRN---------PMVQQGNVPPNfmvmQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQAN 531
Cdd:pfam09770 170 AAAPAPAPQPAAQPASLPAPSRKmmsleeveaAMRAQAKKPAQ----QPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 532 PNFMQGQVPSTTAATPGNSgalQLQANQNVQHAGGQGAGPPQNQMQVSHGPPNMMQPslMGIHGNINNQQAGSSGVPQVT 611
Cdd:pfam09770 246 PQQQPQQPQQHPGQGHPVT---ILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP--TQILQNPNRLSAARVGYPQNP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2238345164 612 LGNMQGQPQQgppsqlmgmhqqivpsqgQMAQQQGTLNPQNPMILSRAQLM 662
Cdd:pfam09770 321 QPGVQPAPAH------------------QAHRQQGSFGRQAPIITHPQQLA 353
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1173-1810 |
7.41e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 7.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1173 PGPSPLSATQGATPQQP-PVNSLPSSHGH-HFPNvaAPTQTSRPKTP--------NRASPRPYYPQTPNNRPPSTEPSEI 1242
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPaPRPSEPAVTSRaRRPD--APPQSARPRAPvddrgdprGPAPPSPLPPDTHAPDPPPPSPSPA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1243 SLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPttlkaigQAPSNLTITNPPnfAAPQAhkldsvVVNSGKQS 1322
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA-------QASSPPQRPRRR--AARPT------VGSLTSLA 2699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1323 NPGTTKRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQnmelprnVLVGPTPLANPPLPGSFPNNTGl 1402
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA-------TPGGPARPARPPTTAGPPAPAP- 2771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1403 nPQNPTVPVPAMGTVlednkesvnipqdsdcqnaqgrkeqvnteLKVVPTQEAKMAVPEDQSKKDGQPLDPNKLPSVEEN 1482
Cdd:PHA03247 2772 -PAAPAAGPPRRLTR-----------------------------PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1483 KnlmSPAMREAPTSLSQlldnsGAPNVTIKPPGLTDLEVTPPVVSGEDLRKAsviptlqdPPSKEPSTSLSSPHSSePCS 1562
Cdd:PHA03247 2822 A---SPAGPLPPPTSAQ-----PTAPPPPPGPPPPSLPLGGSVAPGGDVRRR--------PPSRSPAAKPAAPARP-PVR 2884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1563 TLARSELSEVSSNTA-PSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVTMPNVGN 1641
Cdd:PHA03247 2885 RLARPAVSRSTESFAlPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1642 KVMVSeGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPS-TIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSApvTP 1720
Cdd:PHA03247 2965 GALVP-GRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRvSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDA--DS 3041
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1721 NVPSSSPAPNIQTGRPLvlssratpvqlpSPPCTSSPVVAPNPsvqqvkelNPDEASPQTNTSAdQSTLPPSQPTTVVSP 1800
Cdd:PHA03247 3042 LFDSDSERSDLEALDPL------------PPEPHDPFAHEPDP--------ATPEAGARESPSS-QFGPPPLSANAALSR 3100
|
650
....*....|
gi 2238345164 1801 LLTNSPGSSA 1810
Cdd:PHA03247 3101 RYVRSTGRSA 3110
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1680-1822 |
1.10e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1680 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVQLPSPPCTSS-PV 1758
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPADpPA 2809
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2238345164 1759 VAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTN-SPGSSANRRSPVSSSKGK 1822
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvAPGGDVRRRPPSRSPAAK 2874
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1061-1282 |
1.62e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1061 PPRGPLNPDSQRMPVQQSgnVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQENPQNSSSSPLGEMSSLPEA 1140
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1141 ---SGSEVPSVAGGPNNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSshghhfPNVAAPT 1209
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLAR------PAVSRST 2895
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2238345164 1210 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLnasiaglfPPQINIPLPPRPNLNRGFDQQGLNP 1282
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP--------PPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1112-1415 |
2.68e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.98 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1112 SNSRKMVYQENPQNSSSSP-LGEMSSLPEASGSEVPSVAGGPNNMPSHlvVSQNQLMMTGPKPGPSPLSATQGATPQQPP 1190
Cdd:pfam05109 414 TTTHKVIFSKAPESTTTSPtLNTTGFAAPNTTTGLPSSTHVPTNLTAP--ASTGPTVSTADVTSPTPAGTTSGASPVTPS 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1191 VNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQ-TPNNRPPS---TEPSEISLSPE-RLNASIAGLFPPQINIPL 1265
Cdd:pfam05109 492 PSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTpTPNATSPTlgkTSPTSAVTTPTpNATSPTPAVTTPTPNATI 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1266 P-------------PRPNLNRGF--DQQGLNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVVVNSGKQS---NPGTT 1327
Cdd:pfam05109 572 PtlgktsptsavttPTPNATSPTvgETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSmslRPSSI 651
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1328 KRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQNMELPR----NVLVGPTPLANPPLPGSFPNNTGLN 1403
Cdd:pfam05109 652 SETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRpgttSQASGPGNSSTSTKPGEVNVTKGTP 731
|
330
....*....|..
gi 2238345164 1404 PQNPTVPVPAMG 1415
Cdd:pfam05109 732 PKNATSPQAPSG 743
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
653-847 |
2.80e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.49 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 653 PMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAphnqmmGPQGQVLLQQNPMIEQIMTNqmqgnka 732
Cdd:TIGR01628 355 PLYVALAQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYY------GQGPQQQFNGQPLGWPRMSM------- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 733 qfnsqnqsnvMPGPAQIMRGPTPNMQGNMVQFTGQMSGQM-LPQQGPVNNSPSQVMGIQGQVLRP-PGPSPHMAQQHNDP 810
Cdd:TIGR01628 422 ----------MPTPMGPGGPLRPNGLAPMNAVRAPSRNAQnAAQKPPMQPVMYPPNYQSLPLSQDlPQPQSTASQGGQNK 491
|
170 180 190
....*....|....*....|....*....|....*...
gi 2238345164 811 VTTAnndvNLSQMMPDVSMQQ-ASMVPPHVQSMQGNSA 847
Cdd:TIGR01628 492 KLAQ----VLASATPQMQKQVlGERLFPLVEAIEPALA 525
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
553-708 |
3.05e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.49 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 553 LQLQANQNVQhaggQGAGPPQ-NQMQVSHGPPNMMQPslmgihgninNQQAGSSGVPQVTLGNMQGQPQQGPPSQLMGM- 630
Cdd:TIGR01628 371 LQDQFMQLQP----RMRQLPMgSPMGGAMGQPPYYGQ----------GPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNg 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 631 --HQQIVPSQGQMAQQQGTLNPQNPM-------ILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPH 701
Cdd:TIGR01628 437 laPMNAVRAPSRNAQNAAQKPPMQPVmyppnyqSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLFPL 516
|
....*..
gi 2238345164 702 NQMMGPQ 708
Cdd:TIGR01628 517 VEAIEPA 523
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
1706-1909 |
3.32e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 42.75 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1706 HIPQNIK-FSSAPVTPNVPSSSPAPNiqtgrplvlssraTPVQLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSA 1784
Cdd:PTZ00449 567 HKPSKIPtLSKKPEFPKDPKHPKDPE-------------EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSP 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1785 dQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSKGKGKvDKIGQILLTKACK----KVTGSLEKGEEQYGADGETEGP 1860
Cdd:PTZ00449 634 -KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFK-EKFYDDYLDAAAKsketKTTVVLDESFESILKETLPETP 711
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1861 GLEITTPGLMgteqcsteldsktpTPSAPTLLKMTSSPMG-PSSTSTGPI 1909
Cdd:PTZ00449 712 GTPFTTPRPL--------------PPKLPRDEEFPFEPIGdPDAEQPDDI 747
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1687-1913 |
4.86e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1687 PLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPniQTGRPLV--LSSRATPvqlPSPPCTSSPvvAPNPS 1764
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARPTVgsLTSLADP---PPPPPTPEP--APHAL 2715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1765 VQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSKGKGKVDKIGQILLTKAckkvTGSL 1844
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA----VASL 2791
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2238345164 1845 EKGEEQYGADGETEGPGLEITTPGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGG 1913
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1170-1470 |
8.45e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1170 GPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPN--------------------VAAPTQTSRPKTPNRASPRPYYPQT 1229
Cdd:PHA03247 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPhppptvppperprddpapgrVSRPRRARRLGRAAQASSPPQRPRR 2685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1230 PNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRgfdqQGLNPTTLKAIGQAPSNLTITnPPNFAAPQAH 1309
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR----QASPALPAAPAPPAVPAGPAT-PGGPARPARP 2760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1310 KLDSVVVNSGKQSNPGTTKRASPSNSRRSSPGSSRKTTPSPgRQNSKAPKLTLASQTSTTMLQNMELPRNVLVGPTPLAN 1389
Cdd:PHA03247 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2238345164 1390 PPLPGSFPNNTGLN-------------PQNPTVPVPAMGT----------VLEDNKESVNIPQDSDCQNAQGRKEQVNTE 1446
Cdd:PHA03247 2840 PPPPGPPPPSLPLGgsvapggdvrrrpPSRSPAAKPAAPArppvrrlarpAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
|
330 340
....*....|....*....|....
gi 2238345164 1447 LKVVPTQEAKMAVPEDQSKKDGQP 1470
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPL 2943
|
|
| |
