|
Name |
Accession |
Description |
Interval |
E-value |
| HkD_NuMA |
cd22224 |
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also ... |
6-151 |
1.26e-49 |
|
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles, and the alignment and segregation of chromosomes during mitotic cell division. The model corresponds to the N-terminal conserved globular Hook domain of NuMA, which folds as a variant of the helical calponin homology (CH) domain. It directly binds dynein light intermediate chains LIC1 and LIC2 through a conserved hydrophobic patch shared among other Hook adaptors.
Pssm-ID: 411795 Cd Length: 148 Bit Score: 173.14 E-value: 1.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 6 TRAATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTIHDTKEGQQILQQPLPERLDFVCSFLQKNRKHPSSTQCLVSVQ 85
Cdd:cd22224 2 TKAEALLSWVNSLKLDDPIESISQLQDGTILLKIIYKLKGEEEEEQILDLSVEERLEFISSFLEGDCRFNSSQGTLVSWQ 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 86 KVIEG--SEMELAKMIMLFLYQSTMSSRNlrDWEQFEYGVQAELAVILKFMLDHEESLNLTEDLESFL 151
Cdd:cd22224 82 KILQGenLELELAKVLLLLLYHSMMNNNL--TLEKLDYKTELELASILRFVLDNEDGLYLSEGLDKFL 147
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
554-1323 |
1.40e-27 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 122.47 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 554 LKLKEQQlEEAAKEQEATRQDHAQQLAIVAEAREA--SL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELERQlkSLeRQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLkaeQQKTTEREKVVQEKAQLQEQLRALEESLKITKG 710
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 711 SLEEEKRRaadaLKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHqaetEALRHELAEATASQ 790
Cdd:TIGR02168 324 QLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 871 AIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASlELLKEPPRAANRASDQLGEQQGRPFSST 950
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 951 -HAAVKAMEREAEQMGG-----ELERLRAALIKSQGQQQEERGQQEREVA-RLTQERGQAQADL---------------A 1008
Cdd:TIGR02168 555 lNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALsyllggvlvvddldnA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1009 QEKAAKAELEMRLQnTLNEQRVE---FAALQEALAHALTekEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKE 1085
Cdd:TIGR02168 635 LELAKKLRPGYRIV-TLDGDLVRpggVITGGSAKTNSSI--LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1086 KEHPAGGASGEDASgpGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQG 1165
Cdd:TIGR02168 712 EELEQLRKELEELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1246 ELKRLVVAESEKSQKLEERLRLL--QVETASNSARAAE-RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELG 1322
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLrsELEELSEELRELEsKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
.
gi 2214681115 1323 Q 1323
Cdd:TIGR02168 950 S 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
515-1129 |
9.53e-27 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 119.66 E-value: 9.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 515 LASLKEQAKK-EQAQMLQTmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEqeatrqdhaqqlaivAEAREASLRER 593
Cdd:COG1196 202 LEPLERQAEKaERYRELKE-ELKELEAELLLLKLRELEAELEELEAELEELEAE---------------LEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 594 DTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 674 LKAEQQkttEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQqcratemeAESRSLMEQREREQKELEQ 753
Cdd:COG1196 346 LEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 754 EKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygamfQEQLMALK 833
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL-------AELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 834 GEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDD-LSALQEKMAATNKEVACLKTLVLK 912
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 913 AGEQQETASLELLKEPPRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQERE 992
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 993 VARLTQERGQAQADLAQEKAAKaelemrlqntlNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQ 1072
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRE-----------LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1073 TLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLE 1129
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| NuMA_LGNBD |
cd22298 |
LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; ... |
1866-1924 |
4.54e-26 |
|
LGN binding domain (LGNBD) of nuclear mitotic apparatus protein (NuMA) and similar proteins; NuMA, also called nuclear matrix protein-22 (NMP-22), nuclear mitotic apparatus protein 1 (NUMA1), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of spindle poles and the alignment and segregation of chromosomes during mitotic cell division. It is involved in the establishment of mitotic spindle orientation during metaphase, and elongation during anaphase in a dynein-dynactin-dependent manner. NuMA, in complex with LGN, forms NuMA:LGN hetero-hexamers that promote spindle orientation. The model corresponds to the LGN binding domain (LGNBD) of NuMA. LGN (named for leu-gly-asn repeats) is also known as G protein signaling modulator 2.
Pssm-ID: 412093 Cd Length: 56 Bit Score: 102.68 E-value: 4.54e-26
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 1866 LLSLPGYRPTTRSSARRSQarmSSGAPQGRNSFYMGTCQDEPEQLDDWNRIAELQQRNR 1924
Cdd:cd22298 1 LLSLPGYRPSTRSSTRRSQ---SSSATGGRSTFYMGTCQDEPEHLDDWNRIAELQQRNR 56
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
553-1324 |
1.48e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 115.92 E-value: 1.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 553 SLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSV 632
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 633 TQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREK----VVQEKAQLQEQLRALEESLKIT 708
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaeLEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 709 KGSLEEEKRRAAD---ALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE-EAHQAETEALRHELA 784
Cdd:TIGR02168 364 EAELEELESRLEEleeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkKLEEAELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 785 EATASQHRAESECERLIREVESRQKRFEARQQEEARygamFQEQLMALKGEKTGQEVQEEAVEIHSEG--QPGQQQSQLA 862
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDA----AERELAQLQARLDSLERLQENLEGFSEGvkALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 863 QLHASLAKAIqQVQEKEVRAqkLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQ 942
Cdd:TIGR02168 520 GILGVLSELI-SVDEGYEAA--IEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 943 QGRPFSSTHAAVKAMEREAEQMGGELERLR--------AALIKSQGQQQEERGQQEREVAR-------------LTQERG 1001
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnaLELAKKLRPGYRIVTLDGDLVRPggvitggsaktnsSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1002 QAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQL 1081
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1082 VKKEKEHPA-----GGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQ 1156
Cdd:TIGR02168 757 TELEAEIEEleerlEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1157 DKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQ 1236
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1237 VLEKEGESKELK----RLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELA 1312
Cdd:TIGR02168 917 LEELREKLAQLElrleGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE 996
|
810
....*....|..
gi 2214681115 1313 SQAERAEELGQE 1324
Cdd:TIGR02168 997 ELKERYDFLTAQ 1008
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
412-965 |
2.64e-24 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 111.57 E-value: 2.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKlATDNTQLQTRVETLECE-RGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQ 490
Cdd:COG1196 201 QLEPLERQAEK-AERYRELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 491 GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSsLKLKEQQLEEAAKEQEA 570
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 571 TRQDHAQQLAIVAEAREASLRERDTARQQLETVEK---EKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIG 647
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRaaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 648 ELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALK--- 724
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlag 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 725 ------------------EQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEA 786
Cdd:COG1196 519 lrglagavavligveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 787 TA-SQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLH 865
Cdd:COG1196 599 AAvDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 866 ASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGR 945
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580
....*....|....*....|..
gi 2214681115 946 PFSSTHAA--VKAMEREAEQMG 965
Cdd:COG1196 759 PPDLEELEreLERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
330-870 |
1.98e-23 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 108.87 E-value: 1.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 330 NHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGD 409
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 410 ALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQA 489
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 490 QgAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQE 569
Cdd:COG1196 395 A-AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 570 ATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQ---AANDARDNAQTSVTQAQQEKAELSQKI 646
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavAVLIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 647 GELHACIEASHQEQRQVQARVTEL--EAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALK 724
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 725 EQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQhRAESECERLIREV 804
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-LAEEEEERELAEA 712
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 805 ESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
478-1077 |
2.13e-23 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 108.87 E-value: 2.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 478 QAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMlqtmQEQEQAAQGLRQQVEQLSSSLKLK 557
Cdd:COG1196 211 KAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 558 EQQLEEAAKEQEATRQD--HAQQLAIVAEAREASL-RERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQ 634
Cdd:COG1196 287 QAEEYELLAELARLEQDiaRLEERRRELEERLEELeEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 635 AQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEE 714
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 715 EKRRAADALKEqqcratemEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQAETEALRHELAEATASQHRAE 794
Cdd:COG1196 447 AAEEEAELEEE--------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL-LLEAEADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 795 SECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALkgektgQEVQEEAVEIHSEGQPGQQQ-SQLAQLHASLAKAIQ 873
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED------DEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 874 QVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEppRAANRASDQLGEQQGrpfSSTHAA 953
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR--LREVTLEGEGGSAGG---SLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 954 VKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFA 1033
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2214681115 1034 ALQEALAHALTEKEgtdqelaklrgQEAAQRTELKELQQTLEQL 1077
Cdd:COG1196 747 LLEEEALEELPEPP-----------DLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-1070 |
9.70e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 106.68 E-value: 9.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 275 ELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKvrefanhLQQLQGAFNDLIEEHSKASQEWA 354
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------IEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 355 EKQARLENelstALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRV 434
Cdd:TIGR02168 306 ILRERLAN----LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 435 ETLECERGKQEAQLLAERSRFedekQQLASLIADLQSSVSNLSQAKEELEQasQAQGAQLTAQLTSMTGLNATLQQRDQE 514
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEI----ERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 515 LASLKEQAKKEQAQMlqtmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaiVAEAREASLRERD 594
Cdd:TIGR02168 456 LERLEEALEELREEL----EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA--------LLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKA-------ELS----QKIGELHACIEASHQEQRQV 663
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNElgrvtflPLDsikgTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 664 QARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKI--------TKGSLEEEKRRAADALkeQQCRATEMEa 735
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvtldgdlvRPGGVITGGSAKTNSS--ILERRREIE- 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 816 QEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEK 895
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIE--------QLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 896 MAATNKEVACLKTLVLKAGEQQETASLEL--LKEPPRAANRASDQLGEQqgrpFSSTHAAVKAMEREAEQMGGELERLRa 973
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIeeLEELIEELESELEALLNE----RASLEEALALLRSELEELSEELRELE- 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 974 aliksqgqqqeergqqeREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEalaHALTEKEGTDQEL 1053
Cdd:TIGR02168 908 -----------------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDE 967
|
810
....*....|....*..
gi 2214681115 1054 AKLRGQEAAQRTELKEL 1070
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-907 |
9.70e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 106.68 E-value: 9.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 207 LQTPQFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRI-DHLALLNEKQAASSQEPSELEELRGKNES 285
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 286 LTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAE---KQARLEN 362
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQlelQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 363 ELSTALQDKKCLEEKNEILQGKLSQLEDQatrlqespaPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERG 442
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKK---------LEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 443 KQEAQLLAERSRFEDEKQQLASL-----------------------IADLQSSVSNLSQAKEELEQA-SQAQGAQLTAQL 498
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLerlqenlegfsegvkallknqsgLSGILGVLSELISVDEGYEAAiEAALGGRLQAVV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 499 TSmtglnaTLQQRDQELASLKeQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQ 578
Cdd:TIGR02168 552 VE------NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 579 LAIVAEAREA-SLRERDTARQQLETVEKEKDAKLESLqqqlqaaNDARDNAQTSVTQAQQEKAELSQKIGELhacieash 657
Cdd:TIGR02168 625 VLVVDDLDNAlELAKKLRPGYRIVTLDGDLVRPGGVI-------TGGSAKTNSSILERRREIEELEEKIEEL-------- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 qeqrqvQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAES 737
Cdd:TIGR02168 690 ------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 738 RSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETE---ALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 815 QQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEgQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQE 894
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLN-ERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
730
....*....|...
gi 2214681115 895 KMAATNKEVACLK 907
Cdd:TIGR02168 923 KLAQLELRLEGLE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1117-1652 |
1.53e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 105.79 E-value: 1.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVA-ESEKSQKLEERLRLLQ--VETA 1273
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaEEELEELAEELLEALRaaAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1274 SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAEL--------------MRAQRELGELGSLRQKIVEQERAA 1419
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaaYEAALEAALAAALQNIVVEDDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1420 QQ----LRAEKASYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDqAREKYVQELAAVRTDAETHLAEMRQE 1493
Cdd:COG1196 560 AAaieyLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREAD-ARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1494 AQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEvfqrEQTKQVEELSKKLTEHDQASKVQQQKLKAFQA 1573
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE----ELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 1574 QRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKthydakkqqnqklQEQLQDLEELQKENKELRSEAERLG 1652
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE-------------LPEPPDLEELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1117-1636 |
1.42e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.71 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNS 1276
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1277 ARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1357 LPAKHLcqQLQAEQAAAEKRFREELEQSKQAAGGLQAEL-----MRAQRELGELGSLRQKIVEQERAAQQ----LRAEKA 1427
Cdd:COG1196 494 LLLLEA--EADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaaYEAALEAALAAALQNIVVEDDEVAAAaieyLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1428 SYAE--QLSMLKKAHGLLAEENRGLGERANLGRQFLEVELD---QAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELE 1502
Cdd:COG1196 572 GRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADaryYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1503 VMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEV 1582
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1583 QRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTH------------------------YDAKKQQNQKLQEQLQDLEE 1636
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDLEELerelerlereiealgpvnllaieeYEELEERYDFLSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-903 |
2.65e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHL-----ALLNEKQAASSQE---PSELEELRGKNE 284
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyALANEISRLEQQKqilRERLANLERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 285 SLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAE---KQARLE 361
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQlelQIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 362 NELSTALQDKKCLEEKNEILQGKLSQLEDQatrlqespaPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECER 441
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKK---------LEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 442 GKQEAQLLAERSRFEDEKQQLASL-----------------------IADLQSSVSNLSQAKEELEQA-SQAQGAQLTAQ 497
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLerlqenlegfsegvkallknqsgLSGILGVLSELISVDEGYEAAiEAALGGRLQAV 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 498 LtsMTGLNATLQ--------------------QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKL- 556
Cdd:TIGR02168 551 V--VENLNAAKKaiaflkqnelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 557 ------KEQQLEEAAKEQEATRQDH--AQQLAIVAEAREASL------RERDTARQQLETVE---KEKDAKLESLQQQLQ 619
Cdd:TIGR02168 629 ddldnaLELAKKLRPGYRIVTLDGDlvRPGGVITGGSAKTNSsilerrREIEELEEKIEELEekiAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 620 AANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTE-----------REKVV 688
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaeaeaeIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 689 QEKAQLQEQLRALEESLKITKGSLEEEKRRAADA----------LKEQQCRATEMEAESRSLMEQREREQKELEQEKAGR 758
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLrerleslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 759 KGLEARIQQLEE---AHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMAL--K 833
Cdd:TIGR02168 869 EELESELEALLNeraSLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseE 948
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 834 GEKTGQEVQEEAVEIhsEGQPGQQQSQLAQLHASLAK-------AIQQVQEKEVR-----AQK--LVDDLSALQEKMAAT 899
Cdd:TIGR02168 949 YSLTLEEAEALENKI--EDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERydfltAQKedLTEAKETLEEAIEEI 1026
|
....
gi 2214681115 900 NKEV 903
Cdd:TIGR02168 1027 DREA 1030
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1119-1695 |
2.09e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.86 E-value: 2.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1119 QALRAEISKLEqqcqqqqqqVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDH 1198
Cdd:COG1196 216 RELKEELKELE---------AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1199 SKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSAR 1278
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1279 AAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP 1358
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1359 AKHLCQQLQAEQAAAEKRFREELEQSKQAagglQAELMRAQRELGELGSlRQKIVEQERAAQQLRAEKASYAEQLSMLKK 1438
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALL----EAALAELLEELAEAAA-RLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1439 AHGLLAEENRG-------LGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGA 1511
Cdd:COG1196 522 LAGAVAVLIGVeaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1512 KVKVLEERqrfqEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNE 1591
Cdd:COG1196 602 DLVASDLR----EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1592 LQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRH 1671
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580
....*....|....*....|....
gi 2214681115 1672 LTAQVRSLEAQVAHADQQLRDLGK 1695
Cdd:COG1196 758 EPPDLEELERELERLEREIEALGP 781
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
265-937 |
2.15e-20 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 99.45 E-value: 2.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 265 KQAASSQEPSELEELRGKNESLTV----RLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAfn 340
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAeavkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA-- 1280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 341 dliEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKlSQLEDQATRLQEspAPEKGEVLGDALQLDTLKQEA 420
Cdd:PTZ00121 1281 ---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK-KKAEEAKKKADA--AKKKAEEAKKAAEAAKAEAEA 1354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 421 AKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTS 500
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 501 MTGLNATLQQRDQELASLKEQAKKeqAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLA 580
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 581 ivAEAREAS-LRERDTARQQLETVEKEKDAKLESLQQ--QLQAANDARDNAQtsVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:PTZ00121 1513 --DEAKKAEeAKKADEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEE--KKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQA--RVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEA 735
Cdd:PTZ00121 1589 AEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAE 1665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 816 QEEARYGAMFQEQLMALKG--EKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKA---IQQVQEKEVRAQKLVDDls 890
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKeeEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIfdnFANIIEGGKEGNLVIND-- 1823
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2214681115 891 aLQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASD 937
Cdd:PTZ00121 1824 -SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD 1869
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
213-814 |
2.22e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.86 E-value: 2.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALlnekqaassqepsELEELRGKNESLTVRLHE 292
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 293 TLKQCQNLKTEKSQMDRKISQLSEENgdlsfkvrefanhlqqlqgafndlieehskasQEWAEKQARLENELSTALQDKK 372
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEEL--------------------------------AELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 373 CLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLEcergKQEAQLLAER 452
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 453 SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT 532
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 533 MQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLE 612
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 613 SLQ-QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashqeqrqVQARVTELEAQLKAEQQKTTEREKVVQEK 691
Cdd:COG1196 584 ARAaLAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----------GRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 692 AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2214681115 772 HQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEAR 814
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
856-1636 |
7.82e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.43 E-value: 7.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 856 QQQSQLAQLHASLakaiqQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLvLKAGEQQETASLELLKEPPRAANRA 935
Cdd:TIGR02168 206 ERQAEKAERYKEL-----KAELRELELALLVLRLEELREELEELQEELKEAEEE-LEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 936 SDQLGEQQGRPFSSThAAVKAMEREAEQMGGELERLRAaliksqgqqqeERGQQEREVARLTQERGQAQADLAQEKAAKA 1015
Cdd:TIGR02168 280 EEEIEELQKELYALA-NEISRLEQQKQILRERLANLER-----------QLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1016 ELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQ---ELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGG 1092
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1093 ASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDkALETLQGQLEEKAR 1172
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD-SLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1173 ELghnqAASASAQRELQALRAKAQDHSKAEEEWKA------------------QVARGQQEAERKSSLI-SSLEEEVSIL 1233
Cdd:TIGR02168 507 GV----KALLKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvvenlNAAKKAIAFLKQNELGrVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1234 NRQVLEKEGESKELKRLVVAESEKSQKLEERLRLL------QVETASNSARAAERSSALREE---VQSLREEVEKQRVVS 1304
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDNALELAKKLRPGyriVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1305 ENSRQELASQAERA---EELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREEL 1381
Cdd:TIGR02168 663 GGSAKTNSSILERRreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1382 EQSKQAAGGLQAELMRAQRE----LGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLG 1457
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEieelEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1458 RQFLEVELDQAREKyvqelaavrtdaETHLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQRFQEERQKLTAQVEQLE 1537
Cdd:TIGR02168 823 RERLESLERRIAAT------------ERRLEDLEEQIEELSEDIESLAAEIEELE----ELIEELESELEALLNERASLE 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1538 VFQREQTKQVEELSKKLTEHDqaskvqqQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ-KEQAAEHYKLQMEKAKTH 1616
Cdd:TIGR02168 887 EALALLRSELEELSEELRELE-------SKRSELRRELEELREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEAL 959
|
810 820
....*....|....*....|
gi 2214681115 1617 YDAKKQQNQKLQEQLQDLEE 1636
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1003-1695 |
1.14e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.66 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1003 AQADLAQEKAAKAELEMRLqNTLNEQR---VEFAALQEALAHA-----LTEKEGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:TIGR02168 184 TRENLDRLEDILNELERQL-KSLERQAekaERYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1075 EQLKIQLVKKEKEHPAGGASGEDASGpgtqsetagktdapgpELQALRAEISKLEQQCQQQQQQVEGLTHSLKseracra 1154
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQK----------------ELYALANEISRLEQQKQILRERLANLERQLE------- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILN 1234
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1235 rqvlekegeskelKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQ 1314
Cdd:TIGR02168 400 -------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1315 AERAEELGQELKAWQEKFFQKEQ---ALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKrFREELEQSKQAAGG- 1390
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAAIEAALGg 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1391 -LQAELMR------------AQRELG-------------ELGSLRQKIVEQERAAQQLRAEKASYAEQLSM--------- 1435
Cdd:TIGR02168 546 rLQAVVVEnlnaakkaiaflKQNELGrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1436 -----LKKAHGLLAEENRGL-------------------GERANLGRQFLEVELDQAREKY------VQELAAVRTDAET 1485
Cdd:TIGR02168 626 lvvddLDNALELAKKLRPGYrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIeeleekIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1486 HLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQ 1565
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALR----KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1566 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELR 1645
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1646 SEAERLGRELQ---QAGLKTKEAEQTCRH--------LTAQVRSLEAQVAHADQQLRDLGK 1695
Cdd:TIGR02168 862 EELEELIEELEselEALLNERASLEEALAllrseleeLSEELRELESKRSELRRELEELRE 922
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
959-1666 |
2.45e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 95.98 E-value: 2.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 959 REAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTlneQRVEFAALQEA 1038
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA---RKAEDAKKAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1039 LAHALTEKEGTDQELAK-LRGQEAAQRTE----LKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDA 1113
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEdARKAEAARKAEeerkAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1114 PGPELQALRAEISKLEQQCQQQQQQVEgltHSLKSERACRAEQDKALETLQGQLEEKaRELGHNQAASASAQRELQALRA 1193
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELKKAE---EKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1194 KAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRlvvAESEKSQKLEERLRLLQVETA 1273
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK---ADEAKKKAEEDKKKADELKKA 1413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1274 SNSARAAERSSALREEVQSLREEVEKQrvvsensrqELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALV 1353
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKA---------EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1354 SELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRElgelgslRQKIVEQERAAQQLRAEKASYAEQL 1433
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-------AKKADEAKKAEEKKKADELKKAEEL 1557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1434 SmlKKAHGLLAEENRGLGERANLGRQFLEvELDQAREKYVQELAAVRTDAETHLAEMRQEAqstsrelevmtakyEGAKV 1513
Cdd:PTZ00121 1558 K--KAEEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKA--------------EEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1514 KVlEERQRFQEERQKltaqVEQLEVFQREQTKQVEELSKKltEHDQASKVQQQKLKAFQAQRgesqqevqrlqtQLNELQ 1593
Cdd:PTZ00121 1621 KA-EELKKAEEEKKK----VEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEAKKAEEDKK------------KAEEAK 1681
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1594 AQLSQKEQAAEHYKLQMEKAKTHYDAKKqqnqKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAE 1666
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKK----KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
653-1432 |
3.12e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 95.59 E-value: 3.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 653 IEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEE------KRRAADALKEQ 726
Cdd:PTZ00121 1052 IDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEArkaeeaKKKAEDARKAE 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 727 QCRATEmeaESRSLMEQREREqkELEQEKAGRKGLEARiqQLEEAHQAEtEALRHELAEATASQHRAESecerlIREVES 806
Cdd:PTZ00121 1132 EARKAE---DARKAEEARKAE--DAKRVEIARKAEDAR--KAEEARKAE-DAKKAEAARKAEEVRKAEE-----LRKAED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 807 RQKRFEARQQEEARYGAMFQEQLMALKGE--KTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEavKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 885 LVDDLSALQEKMAATNKEvaclktlvlKAGEQQETASLELLKEPPRAANRASDQLGEQQGRpfssthaaVKAMEREAEQM 964
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAK---------KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------ADAAKKKAEEA 1341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 965 GGELERLRAAliKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAkaelEMRLQNTLNEQRVEFAALQEALAHALT 1044
Cdd:PTZ00121 1342 KKAAEAAKAE--AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE----EKKKADEAKKKAEEDKKKADELKKAAA 1415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1045 EKEGTDQelAKLRGQEAAQRTELKelQQTLEQLKIQLVKKEKEHpagGASGEDASGPGTQSETAGKTDAPGPELQALRAE 1124
Cdd:PTZ00121 1416 AKKKADE--AKKKAEEKKKADEAK--KKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1125 ISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARElghnQAASASAQRELQALRaKAQDHSKAEEE 1204
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD----EAKKAEEKKKADELK-KAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1205 WKAQVARgqQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQklEERLRLLQVETASNSARAAERSS 1284
Cdd:PTZ00121 1564 KKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE--EAKIKAEELKKAEEEKKKVEQLK 1639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1285 ALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQAL----VSELLPAK 1360
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELkkkeAEEKKKAE 1719
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1361 HLCQQLQAEQAAAEKRFREELEQSKQAAgglqaelmRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQ 1432
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAE--------EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
519-1315 |
3.58e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 91.67 E-value: 3.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQ 598
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 599 QLETVEKEKDAK---LESLQQQLQAANdARDNAQTSVTQA--QQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:TIGR02169 252 ELEKLTEEISELekrLEEIEQLLEELN-KKIKDLGEEEQLrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 674 LKAEQQKTTEREKVVQE----KAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEA----------ESRS 739
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEerkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlkreinelkrELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 740 LMEQREREQKELEQEKAGRKGLEARIQQLE---EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQ 816
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 817 EEARYGAmfqeQLMALKGEKTGQEVQEEAVEIHSEGQPGqQQSQLAQLHASLAKAIQQVQEKevRAQKLVDDLSALQEKM 896
Cdd:TIGR02169 491 ELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHG-TVAQLGSVGERYATAIEVAAGN--RLNNVVVEDDAVAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 897 AATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLG-EQQGRP-----FSSThAAVKAMEREAEQMGG-ELE 969
Cdd:TIGR02169 564 IELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEfDPKYEPafkyvFGDT-LVVEDIEAARRLMGKyRMV 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 970 RLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEmRLQNTLNEQRVEFAALQEALAHALTEKEGT 1049
Cdd:TIGR02169 643 TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELS-SLQSELRRIENRLDELSQELSDASRKIGEI 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1050 DQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgtQSETAGKTDAPGPELQALRAEISKLE 1129
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE----------------LKELEARIEELEEDLHKLEEALNDLE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1130 qqCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQV 1209
Cdd:TIGR02169 786 --ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1210 ARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREE 1289
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
810 820
....*....|....*....|....*.
gi 2214681115 1290 VQSLREEVEKQRVVSENSRQELASQA 1315
Cdd:TIGR02169 944 EEIPEEELSLEDVQAELQRVEEEIRA 969
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
562-1324 |
5.46e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 91.36 E-value: 5.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 562 EEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARqqLETVEKEKDAKleSLQQQLQAANDARDNAQTSVTQAQQ---- 637
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDAR--KAEEARKAEDAKRVEIARKAEDARKaeea 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 638 EKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 718 RAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEAR----IQQLEEAHQAETEALRHElaEATASQHRA 793
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKkaeeKKKADEAKKKAEEAKKAD--EAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 794 ESECERLIREVESRQKRFEA-RQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAI 872
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 873 QQVQEKEVRAQKlvddlsalQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPFSSTHA 952
Cdd:PTZ00121 1408 DELKKAAAAKKK--------ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 953 AVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEF 1032
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1033 AALQEALAHALTEKEGTDQELAK---LRGQEAAQRTELKELQQTLEQLKIQLVKKEkehpaggasgEDASGPGTQSETAG 1109
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKA----------EEAKIKAEELKKAE 1629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1110 KTDAPGPELQALRAEisklEQQCQQQQQQVEGLTHSLKSERACRAEQDKaletlqgqleEKARELghnQAASASAQRELQ 1189
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAE----EKKKAEELKKAEEENKIKAAEEAKKAEEDK----------KKAEEA---KKAEEDEKKAAE 1692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1190 ALRAKAQDHSKAEeewkaQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEErlrLLQ 1269
Cdd:PTZ00121 1693 ALKKEAEEAKKAE-----ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKK 1764
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1270 VETASNSARAAERSSALREEVqslREEVEKQRVVSENSRQELASQAERAEELGQE 1324
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEEL---DEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
211-844 |
4.18e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALLNEKQAASSQEPS--------ELEELRGK 282
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELEsrleeleeQLETLRSK 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 283 NESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANH------------LQQLQGAFNDLIEEHSKAS 350
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeleeleeeLEELQEELERLEEALEELR 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 351 QEWAEKQARL---ENELSTALQDKKCLEEKNEILQG----------KLSQLEDQATRLQESPAPEKG------EVLGDAL 411
Cdd:TIGR02168 468 EELEEAEQALdaaERELAQLQARLDSLERLQENLEGfsegvkallkNQSGLSGILGVLSELISVDEGyeaaieAALGGRL 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 Q-------------LDTLKQEAAKLATD---NTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSN 475
Cdd:TIGR02168 548 QavvvenlnaakkaIAFLKQNELGRVTFlplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 476 LSQAKEELEQASQAQGAQLTAQLT--------SMTG----LNATLQQRDQELASLKEQakkeQAQMLQTMQEQEQAAQGL 543
Cdd:TIGR02168 628 VDDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGgsakTNSSILERRREIEELEEK----IEELEEKIAELEKALAEL 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 544 RQQVEQLSSSLKLKEQQLEEAAKEQEATRQDhAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND 623
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 624 ARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQ-----------QKTTEREKVVQEKA 692
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrledleeqieELSEDIESLAAEIE 862
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 693 QLQEQLRALE---ESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:TIGR02168 863 ELEELIEELEselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 770 EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRF--------EARQQEEARYGAMFQEQLMALKGEKTGQEV 841
Cdd:TIGR02168 943 ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
...
gi 2214681115 842 QEE 844
Cdd:TIGR02168 1023 IEE 1025
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-1072 |
2.21e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 86.35 E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 343 IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLedqATRLQESPAPEKGEVLGDALQLDTLKQEAAK 422
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI---ARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 423 LATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQlasliadlqSSVSNLSQAKEELEQASQAQGAQLTAQLTSMT 502
Cdd:PTZ00121 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA---------EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 503 GLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGL-RQQVEQLSSslKLKEQQLEEAAKEQEATRQDHAQQLAI 581
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEeKKKADEAKK--KAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 582 VAE----AREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQtsvtqaQQEKAELSQKIGELHAciEASH 657
Cdd:PTZ00121 1337 KAEeakkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE------EKKKADEAKKKAEEDK--KKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQARVTELEAQLKAEQ-QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAE 736
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 737 SRSLMEQREREQKELEQEKAGRKGLEAR----IQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFE 812
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKkaeeAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 813 ARQQEEARYGAMFQEQLMalkgeKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEA-----KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 893 QEKMAATN----KEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLG--EQQGRPFSSTHAAVKAMEREAEQMGG 966
Cdd:PTZ00121 1644 EEKKKAEElkkaEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 967 ELE---------RLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVE------ 1031
Cdd:PTZ00121 1724 AEEenkikaeeaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDkkikdi 1803
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 2214681115 1032 ---FAALQEA----LAHALTEKEGTDQELAKLRGQEAAQRTELKELQQ 1072
Cdd:PTZ00121 1804 fdnFANIIEGgkegNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEK 1851
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
954-1679 |
5.60e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 5.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 954 VKAMEREAEQMGGELERLRAA---LIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQ---NTLNE 1027
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEvseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEeleSKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1028 QRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgtqset 1107
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ-------------------- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1108 agktdapgpeLQALRAEISKLEQQCQQQQQQVEGLTHSLKSERacRAEQDKALETLQGQLEEKARELGHNQAASASAQRE 1187
Cdd:TIGR02168 395 ----------IASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1188 LQALRAKAQDHSKAEEEWKAQVARGQQEAErksslissleeevsILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRL 1267
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLD--------------SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1268 LQVETASNSARAAerssALREEVQSLreevekqrVVSENSRQELASQAERAEELGQ----ELKAWQEKFFQKEQALSALQ 1343
Cdd:TIGR02168 529 ISVDEGYEAAIEA----ALGGRLQAV--------VVENLNAAKKAIAFLKQNELGRvtflPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1344 LEHTSTQALVSELLPAK-HLCQQLQAEQAAAEKRFREELEQSKQAAGG-----LQAELMRAQ-RELGELGSLRQKIVEQE 1416
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKlRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGgVITGGSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1417 RAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEvELDQAREKYVQELAAVRTDAEThLAEMRQEAQS 1496
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQ-LEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1497 TSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRG 1576
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1577 ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQ-----------DLEELQKENKELR 1645
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrseleelseELRELESKRSELR 914
|
730 740 750
....*....|....*....|....*....|....
gi 2214681115 1646 SEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSL 1679
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-885 |
2.27e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 2.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 244 EKDAQIAMMQQRIDHLAL-LNEKQAASSQEPSELEELrGKNESLTVR-----LHETLKQCQN----LKTEKSQMDRKISQ 313
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKrLEEIEQLLEELNKKIKDL-GEEEQLRVKekigeLEAEIASLERsiaeKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 314 LSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLEN---ELSTALQDKKCLEEKNEILQGKLSQLED 390
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 391 QATRLQESPAPEKGEVLgdalqldTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQ 470
Cdd:TIGR02169 407 ELDRLQEELQRLSEELA-------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 471 SSVSNLSQAKEELEQASQAQGAQLTAQLTS-------------MTGLNATLQQRDQELASLKEQA--KKEQAQMLQTMQE 535
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGraveevlkasiqgVHGTVAQLGSVGERYATAIEVAagNRLNNVVVEDDAV 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 536 QEQAAQGLR---------------QQVEQLSSSLKLK------------EQQLEEAAK---------EQEATRQDHAQQL 579
Cdd:TIGR02169 560 AKEAIELLKrrkagratflplnkmRDERRDLSILSEDgvigfavdlvefDPKYEPAFKyvfgdtlvvEDIEAARRLMGKY 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 580 --------------AIVAEAREASLRERDTARQQLEtvEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQK 645
Cdd:TIGR02169 640 rmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAE--LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 646 IGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTT----EREKVVQEKAQLQEQLRALEESLKITKGSL--------E 713
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvksELKELEARIEELEEDLHKLEEALNDLEARLshsripeiQ 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 714 EEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARI---QQLEEAHQAETEALRHELAEATASQ 790
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIksiEKEIENLNGKKEELEEELEELEAAL 877
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 791 HRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEavEIHSEGQPGQQQSQLAQLHASLAK 870
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE--ELSEIEDPKGEDEEIPEEELSLED 955
|
730
....*....|....*
gi 2214681115 871 AIQQVQEKEVRAQKL 885
Cdd:TIGR02169 956 VQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
646-1553 |
1.33e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 646 IGELHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKAQLqEQLRALEESLKITKGSLEEEKRRAADALKE 725
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIID---EKRQQLERLRREREKA-ERYQALLKEKREYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 726 Q-QCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREV 804
Cdd:TIGR02169 241 AiERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 805 ESRQKRFEARQQEearygamFQEQLMALKGEKTGQEVQEEAVeihsegqpgqqQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:TIGR02169 321 EERLAKLEAEIDK-------LLAEIEELEREIEEERKRRDKL-----------TEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 885 LVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLkEPPRAANRASDQLGEQQgrpfssthAAVKAMEREAEQM 964
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELE--------EEKEDKALEIKKQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 965 GGELERLRAALIKsqgqqqeergqQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRvEFAALQEALAHALT 1044
Cdd:TIGR02169 454 EWKLEQLAADLSK-----------YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR-GGRAVEEVLKASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1045 EKEGTDQELAKLRGQ-----EAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGAS------GEDASGPGTQSETAGKTDa 1113
Cdd:TIGR02169 522 GVHGTVAQLGSVGERyataiEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATflplnkMRDERRDLSILSEDGVIG- 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1114 pgpelqaLRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKA-LETLQGQLEEKARELGHNQAASASAQRELQALR 1192
Cdd:TIGR02169 601 -------FAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYrMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1193 AKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1273 ASNSA---RAAERSSALREEVQSLREEVEKqrVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTST 1349
Cdd:TIGR02169 754 ENVKSelkELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1350 QALVSELLpakhlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGS-----------LRQKIVEQERA 1418
Cdd:TIGR02169 832 EKEIQELQ-------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESrlgdlkkerdeLEAQLRELERK 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1419 AQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDqarekyvqelaavrtdaETHLAEMRQEAQSTS 1498
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-----------------LEDVQAELQRVEEEI 967
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1499 RELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLevfqREQTKQVEELSKK 1553
Cdd:TIGR02169 968 RALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI----LERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1043-1693 |
1.91e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.26 E-value: 1.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1043 LTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDasgpgtqsETAGKTDAPGPELQALR 1122
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD--------LGEEEQLRVKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1123 AEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAE 1202
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1203 EEWKAQVargqqeaerkssliSSLEEEVSILNRqvlekegESKELKRLVVAESEKSQKLEERLRLLQVETasnsARAAER 1282
Cdd:TIGR02169 381 AETRDEL--------------KDYREKLEKLKR-------EINELKRELDRLQEELQRLSEELADLNAAI----AGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1283 SSALREEVQSLREEVEKQRvvsensrqelasqaERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKhl 1362
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQE--------------WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-- 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1363 cqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQR------ELGELGSLRQKIVEQERAAQQ----LRAEKASYAEQ 1432
Cdd:TIGR02169 500 --RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataiEVAAGNRLNNVVVEDDAVAKEaielLKRRKAGRATF 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1433 LSMLKKAHGLLaeENRGLGERANLGRQFLEVELDQARE---KYVQELAAVRTDAETHLAEMRQEAQSTsreLE------- 1502
Cdd:TIGR02169 578 LPLNKMRDERR--DLSILSEDGVIGFAVDLVEFDPKYEpafKYVFGDTLVVEDIEAARRLMGKYRMVT---LEgelfeks 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1503 -VMTAKY------EGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLtehdqasKVQQQKLKAFQAQR 1575
Cdd:TIGR02169 653 gAMTGGSraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL-------SDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1576 GESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLE--ELQKENKELRSEAERLGR 1653
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLEE 805
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2214681115 1654 ELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDL 1693
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
335-1324 |
2.21e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.26 E-value: 2.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 335 LQGAFNDLIEEHSKASQEWAEKQA---RLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPApekgevlgDAL 411
Cdd:TIGR02169 140 LQGDVTDFISMSPVERRKIIDEIAgvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE--------KAE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEaaKLATDNTQLQTRVETLEcergKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:TIGR02169 212 RYQALLKE--KREYEGYELLKEKEALE----RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 AQLTAQLTSmtglnatlqqrdqELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSslklKEQQLEEAAKEQEAT 571
Cdd:TIGR02169 286 EEEQLRVKE-------------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK----LLAEIEELEREIEEE 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDA---KLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGE 648
Cdd:TIGR02169 349 RKRRDKLTEEYAELKE----ELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 649 LHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKAQLQEQLRALEESLKItkgsLEEEKRRAADALKEQQC 728
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEA 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 729 RATEMEAESRSlmeqREREQKELEQEKAGRKGLEARIQQLEEAHQAETE-ALRHELAEATASQHRAESECERLIREVESR 807
Cdd:TIGR02169 498 QARASEERVRG----GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvAAGNRLNNVVVEDDAVAKEAIELLKRRKAG 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 808 QKRFEARQQeearygaMFQEQLMALKGEKTGqeVQEEAVEihsegqpgqqqsqLAQLHASLAKAIQQVqekeVRAQKLVD 887
Cdd:TIGR02169 574 RATFLPLNK-------MRDERRDLSILSEDG--VIGFAVD-------------LVEFDPKYEPAFKYV----FGDTLVVE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 888 DLSALQEKM-----------------AATNKEVACLKTLVLKAGEQQETASL-ELLKEPPRAANRASDQLGEQQGRPFSS 949
Cdd:TIGR02169 628 DIEAARRLMgkyrmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAELQRLrERLEGLKRELSSLQSELRRIENRLDEL 707
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 950 THAAvkameREAEQMGGELERlraaliksqgqqqeergqqerevarltqERGQAQADLAQEKAAKAELEMRLQntlneqr 1029
Cdd:TIGR02169 708 SQEL-----SDASRKIGEIEK----------------------------EIEQLEQEEEKLKERLEELEEDLS------- 747
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1030 vefaALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpaggasgedasgpgTQSETAG 1109
Cdd:TIGR02169 748 ----SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS---------------KLEEEVS 808
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1110 KTDApgpELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQ 1189
Cdd:TIGR02169 809 RIEA---RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1190 ALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAE------SEKSQKLEE 1263
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsledvQAELQRVEE 965
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1264 RLRLLQvetaSNSARAAERSsalrEEVQSLREEVEKQRVVSENSRQELASQAERAEELGQE 1324
Cdd:TIGR02169 966 EIRALE----PVNMLAIQEY----EEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
774-1654 |
2.59e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 2.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 774 AETEALRHELAEATASQHRAESecerLIREVESRQKRFEARQQEEARYgamfqeqlMALKGEKTGQEVQEEAVEIHS-EG 852
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDL----IIDEKRQQLERLRREREKAERY--------QALLKEKREYEGYELLKEKEAlER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 853 QPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEK-MAATNKEVACLKTLVLKAgeqqeTASLELLKEPPRA 931
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGEL-----EAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 932 ANRASDQLGEQQGRPFSSTHAavkaMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEK 1011
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDK----LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1012 AAKAELEMrLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQ-------QTLEQLKIQLVKK 1084
Cdd:TIGR02169 389 DYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqeWKLEQLAADLSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1085 EKEHpaggasgedasgpgtqSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGlthslksERACRAEQDKALETLQ 1164
Cdd:TIGR02169 468 EQEL----------------YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG-------GRAVEEVLKASIQGVH 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1165 GQLEEKAR-ELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQ------QEAERKSSLISSLEEEVSI---LN 1234
Cdd:TIGR02169 525 GTVAQLGSvGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRatflplNKMRDERRDLSILSEDGVIgfaVD 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1235 RQVLEKEGESKEL----KRLVVAESEKSQKLEERLRLLQVET-----------ASNSARAAE-RSSALREEVQSLREEVE 1298
Cdd:TIGR02169 605 LVEFDPKYEPAFKyvfgDTLVVEDIEAARRLMGKYRMVTLEGelfeksgamtgGSRAPRGGIlFSRSEPAELQRLRERLE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1299 KQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFR 1378
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1379 EELEQSKQAAGGLQAELMRAQRELGelgslRQKIVEQERAAQQLRAEKASYAEQLSMLKkahgllAEENRGLGERANLgr 1458
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLEARLS-----HSRIPEIQAELSKLEEEVSRIEARLREIE------QKLNRLTLEKEYL-- 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1459 qfleveldqarEKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLE---ERQRFQEERQKLTAQVEQ 1535
Cdd:TIGR02169 832 -----------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDlesRLGDLKKERDELEAQLRE 900
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1536 LEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTqLNELQAQLSQKEQAAEHYKLQMEKAKT 1615
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
890 900 910
....*....|....*....|....*....|....*....
gi 2214681115 1616 HYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRE 1654
Cdd:TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1235-1703 |
2.95e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 75.72 E-value: 2.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1235 RQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQ-VETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELAS 1313
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1314 QAERAEEL--------GQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqqlQAEQAAAEKRFREELEQSK 1385
Cdd:COG4913 321 LREELDELeaqirgngGDRLEQLEREIERLERELEERERRRARLEALLAAL----------GLPLPASAEEFAALRAEAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1386 QAAGGLQAELMRAQRELGELgslRQKIVEQERAAQQLRAEKAS-----------YAEQLSMLKKAHGLLAEENRGLGEra 1454
Cdd:COG4913 391 ALLEALEEELEALEEALAEA---EAALRDLRRELRELEAEIASlerrksniparLLALRDALAEALGLDEAELPFVGE-- 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1455 nlgrqFLEVELDQAR--------------------EKYVQELAAV-RTDAETHL------------AEMRQEAQSTSREL 1501
Cdd:COG4913 466 -----LIEVRPEEERwrgaiervlggfaltllvppEHYAAALRWVnRLHLRGRLvyervrtglpdpERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1502 EVMTAKYEGAKVKVLEERQRFqeerqkltAQVEQLEVFQRE--------QTKQveelSKKLTEHDQASKVQQQ------- 1566
Cdd:COG4913 541 DFKPHPFRAWLEAELGRRFDY--------VCVDSPEELRRHpraitragQVKG----NGTRHEKDDRRRIRSRyvlgfdn 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1567 --KLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQ--KLQEQLQDLEELQKENK 1642
Cdd:COG4913 609 raKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiaELEAELERLDASSDDLA 688
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1643 ELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDAL 1703
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
243-750 |
4.52e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 75.08 E-value: 4.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 243 TEKDAQIAMMQQRIDHlALLNEKQAASSQEPSELEEL----------RGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS 312
Cdd:PRK02224 190 DQLKAQIEEKEEKDLH-ERLNGLESELAELDEEIERYeeqreqaretRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 313 QLSEENGDLSFKVREFANHLQQLQGAFNDL----------IEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQ 382
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 383 GKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQL 462
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 463 ASLIADLQSSVSNLSQAKEELEQA--------------------SQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQA 522
Cdd:PRK02224 429 AELEATLRTARERVEEAEALLEAGkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 523 K-----KEQAQMLQ--------TMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaiVAEAREAS 589
Cdd:PRK02224 509 DrierlEERREDLEeliaerreTIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE--------EVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 590 LRERDTARQQLETVEkEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACI-EASHQEQRQVQARVT 668
Cdd:PRK02224 581 LAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAE 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 669 ELEAQLKAE-QQKTTEREKVVQEKAQLQEQLRALEEsLKITKGSLeEEKRRAADALKEQQCRATEMEAESRSLMEQRERE 747
Cdd:PRK02224 660 EYLEQVEEKlDELREERDDLQAEIGAVENELEELEE-LRERREAL-ENRVEALEALYDEAEELESMYGDLRAELRQRNVE 737
|
...
gi 2214681115 748 QKE 750
Cdd:PRK02224 738 TLE 740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
537-1230 |
4.73e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 74.95 E-value: 4.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 537 EQAAQGLRQQVEQLSSSlklkEQQLEEAAKeqeatRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA-KLESLQ 615
Cdd:COG4913 224 FEAADALVEHFDDLERA----HEALEDARE-----QIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 616 QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHAcieashQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQ 695
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEA------QIRGNGGDRLEQLEREIERLER---ELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 696 EQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEeahqAE 775
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP----AR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 776 TEALRHELAEATASqhrAESE----CErLIrEVESRQKRFEA------RQQE-----EARYGAMFQEqlmALKGEKTGQE 840
Cdd:COG4913 442 LLALRDALAEALGL---DEAElpfvGE-LI-EVRPEEERWRGaiervlGGFAltllvPPEHYAAALR---WVNRLHLRGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 841 VQEEAVEIHSEGQPGQQ---QSQLAQLHASLAKAIQQVQEKEVRAQKL--VDDLSAL-QEKMAATnkeVACLKTLVLKAG 914
Cdd:COG4913 514 LVYERVRTGLPDPERPRldpDSLAGKLDFKPHPFRAWLEAELGRRFDYvcVDSPEELrRHPRAIT---RAGQVKGNGTRH 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 915 EQQetaslellkepPRAANRASDQLGeqqgrpfSSTHAAVKAMEREAEQMGGELERLRAALikSQGQQQEERGQQEREVA 994
Cdd:COG4913 591 EKD-----------DRRRIRSRYVLG-------FDNRAKLAALEAELAELEEELAEAEERL--EALEAELDALQERREAL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 995 RLTQERGQAQADLAQEKAAKAELEMRLQNtLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:COG4913 651 QRLAEYSWDEIDVASAEREIAELEAELER-LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1075 EQLKIQLvkkekehpaggasgedasgpgtQSETAGKTDAPGPELQALRAEisklEQQCQQQQQQVEGLTHSLKSERACRA 1154
Cdd:COG4913 730 DELQDRL----------------------EAAEDLARLELRALLEERFAA----ALGDAVERELRENLEERIDALRARLN 783
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHS--KAEEEWKAQVARgqQEAERKSSLISSLEEEV 1230
Cdd:COG4913 784 RAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGlpEYEERFKELLNE--NSIEFVADLLSKLRRAI 859
|
|
| HkD_SF |
cd22211 |
Hook domain-containing proteins superfamily; The Hook domain superfamily includes Hook adaptor ... |
8-136 |
2.39e-12 |
|
Hook domain-containing proteins superfamily; The Hook domain superfamily includes Hook adaptor proteins, Hook-related proteins and nuclear mitotic apparatus protein (NuMA). They share an N-terminal conserved globular Hook domain, which folds as a variant of the helical calponin homology (CH) domain with an extended alpha-helix. The Hook domain is responsible for the binding of microtubule. The Hook family includes microtubule-binding proteins, Hook1-3. Hook1 is required for spermatid differentiation. Hook2 contributes to the establishment and maintenance of centrosome function. Hook3 is an adaptor protein for microtubule-dependent intracellular vesicle and protein trafficking, and is involved in Golgi and endosome transport. Hook proteins are components of the FTS/Hook/FHIP complex (FHF complex), which may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting (HOPS) complex. The Hook-related protein (HkRP) family includes Daple, Girdin and Gipie. Daple, also called Dvl-associating protein with a high frequency of leucine residues, or coiled-coil domain-containing protein 88C(CCDC88C), or Hook-related protein 2 (HkRP2), is a novel non-receptor nucleotide exchange factor (GEF) required for activation of guanine nucleotide-binding proteins (G-proteins) during non-canonical Wnt signaling. Girdin, also called Akt phosphorylation enhancer (APE), or coiled-coil domain-containing protein 88A (CCDC88A), or G alpha-interacting vesicle-associated protein (GIV), or Girders of actin filament, or Hook-related protein 1 (HkRP1), is a bifunctional modulator of guanine nucleotide-binding proteins (G proteins). Gipie, also called GRP78-interacting protein induced by ER stress, or coiled-coil domain-containing protein 88B(CCDC88B), or brain leucine zipper domain-containing protein, or Hook-related protein 3 (HkRP3), is a novel actin cytoskeleton-binding protein and Akt substrate that regulates cell migratory responses in various biological contexts. NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles and the alignment and the segregation of chromosomes during mitotic cell division.
Pssm-ID: 411792 Cd Length: 145 Bit Score: 66.53 E-value: 2.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 8 AATLLSWVNSLHVADPVETVLQLQDCSIFIKIINTI---HDTKEGQQILQQPLP-----ERLDFVCSFLQKNRKH----P 75
Cdd:cd22211 1 EAALLAWINTFPLSSPVESLDDLSDGVVLAEILSQIdpsYFDSEWLESRDSSDNwvlklNNLKKLYRSLSKYYREvlgqQ 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 76 SSTQCLVSVQKV-IEGSEMELAKMIMLFLYQSTMSSRNLRD---WEQFEYGVQAELAVILKFMLD 136
Cdd:cd22211 81 LSDLPLPDLSAIaRDGDEEEIVKLLELVLGAAVQCENKEEYiarIQQLDESTQAELMLIIQEVLE 145
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
512-1339 |
6.16e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 71.54 E-value: 6.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 512 DQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQlAIVAEAREASLR 591
Cdd:pfam02463 159 EEEAAGSRLKRKKKEAL-KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-YLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 592 ERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacIEASHQEQRQVQARVTELE 671
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE---EEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 672 AQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKEL 751
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 752 EQEKAGRKGLEARIQqlEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMA 831
Cdd:pfam02463 394 EEELELKSEEEKEAQ--LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 832 LKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEK-----------------EVRAQKLVDDLSALQE 894
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDgvggriisahgrlgdlgVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 895 KMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPF--SSTHAAVKAMEREAEQMGGELERLR 972
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNlaQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 973 AALIKSQGQQQEERGQQEREVARL-----TQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKE 1047
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEeglaeKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1048 GTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpagGASGEDASGPGTQSETAGKTDAPGPELQALRAEISK 1127
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE----EEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1128 LEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKA 1207
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1208 QVARG------QQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAE 1281
Cdd:pfam02463 868 LLQELllkeeeLEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1282 RSSA------LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQAL 1339
Cdd:pfam02463 948 KEKEennkeeEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAI 1011
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1176-1722 |
7.44e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.10 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1176 HNQAASASAQRE-LQALRAKAQDHSKAEEEwkaqvaRGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAE 1254
Cdd:COG4913 241 HEALEDAREQIElLEPIRELAERYAAARER------LAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1255 SEKSQKLEERLRLLQVETASNSARAAERssaLREEVQSLREEVEKQRVVSEN--------------SRQELASQ----AE 1316
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARleallaalglplpaSAEEFAALraeaAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1317 RAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL------LPAKHLcqqlqaeqaaaekRFREELEqskQAAGG 1390
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLerrksnIPARLL-------------ALRDALA---EALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1391 LQAEL--------MRAQREL------GELGSLRQKI-VEQERAAQQLRaekasYAEQLSMLKKAHGLLAEENRGLGERAN 1455
Cdd:COG4913 456 DEAELpfvgelieVRPEEERwrgaieRVLGGFALTLlVPPEHYAAALR-----WVNRLHLRGRLVYERVRTGLPDPERPR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1456 LGRQFL----EVELDQAREkYVQELAAVRTDAE--THLAEMRQEAQ--------STSRELEVMTAKYEGAKVKVL----- 1516
Cdd:COG4913 531 LDPDSLagklDFKPHPFRA-WLEAELGRRFDYVcvDSPEELRRHPRaitragqvKGNGTRHEKDDRRRIRSRYVLgfdnr 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1517 EERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRgesqqEVQRLQTQLNELQA-- 1594
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER-----EIAELEAELERLDAss 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1595 -QLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLT 1673
Cdd:COG4913 685 dDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVE 764
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1674 AQVR-SLEAQVAHADQQLRDL-GKFQVATDALKSREPQVKPQLDLSIDSLD 1722
Cdd:COG4913 765 RELReNLEERIDALRARLNRAeEELERAMRAFNREWPAETADLDADLESLP 815
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
450-648 |
9.06e-12 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 71.02 E-value: 9.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 450 AERSRFEDEKQQLASLIADLQSSVSNLSQAKeeLEQASQAQGAQL-------TAQLTSMT-GLNAtLQQRDQELASLKEQ 521
Cdd:NF012221 1569 ADRQRLEQEKQQQLAAISGSQSQLESTDQNA--LETNGQAQRDAIleesravTKELTTLAqGLDA-LDSQATYAGESGDQ 1645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 522 AKKEQAQ-MLQTMQEQ-EQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQ-----QLAIVAEAREASLRERD 594
Cdd:NF012221 1646 WRNPFAGgLLDRVQEQlDDAKKISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQGEQnqanaEQDIDDAKADAEKRKDD 1725
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 595 TARQQLETVEKEKDAKLESLQQQLQAANDARdNAQTSVTQAQQEKAELSQKIGE 648
Cdd:NF012221 1726 ALAKQNEAQQAESDANAAANDAQSRGEQDAS-AAENKANQAQADAKGAKQDESD 1778
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
381-960 |
1.00e-11 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 70.64 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 381 LQGKLSQLEDQATRLQESpapeKGEVLGDALQLDTLKQEAA--------KLATDNTQLQTRVETLECERGKQEAQLLAER 452
Cdd:pfam12128 246 LQQEFNTLESAELRLSHL----HFGYKSDETLIASRQEERQetsaelnqLLRTLDDQWKEKRDELNGELSAADAAVAKDR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 453 SRFED-EKQQLASLIADLQSSVSNLSQA---KEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQ 528
Cdd:pfam12128 322 SELEAlEDQHGAFLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 529 MLQTMQEQEQAAQG--------LRQQVEQLSSSLKLKEQQLEEAAKEqEATRQDHAQQLAIVAEAREASLRERDTARQQL 600
Cdd:pfam12128 402 IREARDRQLAVAEDdlqaleseLREQLEAGKLEFNEEEYRLKSRLGE-LKLRLNQATATPELLLQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 601 EtvekEKDAKLESLQQQLQAANDARDNA-------QTSVTQAQQEKAELSQ----KIGELHACIEASHQEQRQVQARVTE 669
Cdd:pfam12128 481 E----AANAEVERLQSELRQARKRRDQAsealrqaSRRLEERQSALDELELqlfpQAGTLLHFLRKEAPDWEQSIGKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 670 LEAQLKAEQQKTTEREKVVQEKAQLQEQLRaLEESLKITKGSLEEEKRRAADALKE----QQCRATEMEAESRSLMEQRE 745
Cdd:pfam12128 557 PELLHRTDLDPEVWDGSVGGELNLYGVKLD-LKRIDVPEWAASEEELRERLDKAEEalqsAREKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 746 REQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAM- 824
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTe 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 825 FQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVA 904
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 905 CLKTLvlkageQQETASLE--LLKEPPRAANRASDQLGEQQGRPFSSTHAAVKAMERE 960
Cdd:pfam12128 796 RYFDW------YQETWLQRrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEME 847
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1466-1707 |
1.24e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1466 DQAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLevfqREQTK 1545
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----YELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1546 QVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKthyDAKKQQNQ 1625
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE---EALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1626 KLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDALKS 1705
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
..
gi 2214681115 1706 RE 1707
Cdd:COG1196 453 EL 454
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
213-814 |
1.57e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 213 QMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAllnekqaassqepSELEELRGKNESLTVRLHE 292
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL-------------AEIEELEREIEEERKRRDK 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 293 TLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSK---ASQEWAEKQARLENELSTALQ 369
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeELQRLSEELADLNAAIAGIEA 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 370 DKKCLEEKNEILQGKLSQLEDQATRLQEspapekgevlgdalQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLL 449
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAA--------------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 450 AERSRFEDEKQQLASLIADLQS---SVSNLSQAKEELEQASQ-AQGAQLTA--------------QLTSMTGLNAT---- 507
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGERYATAIEvAAGNRLNNvvveddavakeaieLLKRRKAGRATflpl 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 508 --LQQRDQELASLKEQAKKEQAQMLQTMQEQEQAA--------------------------------------------- 540
Cdd:TIGR02169 581 nkMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsr 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 541 ---------QGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKL 611
Cdd:TIGR02169 661 aprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 612 ESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEA-----SHQEQRQVQ--------------ARVTELEA 672
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQaelskleeevsrieARLREIEQ 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 673 QLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 753 QEKAGRKGLEARIQQLEEaHQAETEALRHELAEATASQHRA------ESECERLIREVESRQKRFEAR 814
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRK-RLSELKAKLEALEEELSEIEDPkgedeeIPEEELSLEDVQAELQRVEEE 966
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
324-803 |
2.18e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 324 KVREFANHLQQLQGAFNDLIEEHSKASQ-----------EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQA 392
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLAEleylraalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 393 TRLQESPAPEKGEVLGD-ALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQS 471
Cdd:COG4913 326 DELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 472 SVSNLSQAKEELEQASQaqgaQLTAQLTSMTGLNATLQQRDQEL-ASLKEQAKKEQAQM-----LQTMQEQEQAAQG--- 542
Cdd:COG4913 406 ALAEAEAALRDLRRELR----ELEAEIASLERRKSNIPARLLALrDALAEALGLDEAELpfvgeLIEVRPEEERWRGaie 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 543 --LRQQ-----------------VEQLSSSLKLKEQQLEEAAKEQEATRQDH---AQQLAI----VAEAREASLRER--- 593
Cdd:COG4913 482 rvLGGFaltllvppehyaaalrwVNRLHLRGRLVYERVRTGLPDPERPRLDPdslAGKLDFkphpFRAWLEAELGRRfdy 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 594 ---DTArQQLETVEK---------------EKD----------------AKLESLQQQLQAANDARDNAQTSVTQAQQEK 639
Cdd:COG4913 562 vcvDSP-EELRRHPRaitragqvkgngtrhEKDdrrrirsryvlgfdnrAKLAALEAELAELEEELAEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 640 AELSQKIGELHACIEASHQEQ--RQVQARVTELEAQLKAE-------QQKTTEREKVVQEKAQLQEQLRALEEslkiTKG 710
Cdd:COG4913 641 DALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLdassddlAALEEQLEELEAELEELEEELDELKG----EIG 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 711 SLEEEKRRAADALKEQQCRATEMEAESRSLMEQRereqkeleqekagrkgLEARIQQL--EEAHQAETEALRHELAEATA 788
Cdd:COG4913 717 RLEKELEQAEEELDELQDRLEAAEDLARLELRAL----------------LEERFAAAlgDAVERELRENLEERIDALRA 780
|
570
....*....|....*
gi 2214681115 789 SQHRAESECERLIRE 803
Cdd:COG4913 781 RLNRAEEELERAMRA 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1378-1683 |
5.21e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 5.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1378 REELEQSKQAAGGLQAELMRAQRE--LGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAhgllaEENRGLGERAN 1455
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALERQKEaiERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-----IKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1456 LGRQFLEVELDQAREKyvqelaavrtDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQ 1535
Cdd:TIGR02169 292 VKEKIGELEAEIASLE----------RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1536 LEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKT 1615
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1616 HYDAK----KQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQV 1683
Cdd:TIGR02169 442 EKEDKaleiKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1144-1667 |
6.33e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 6.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1144 HSLKSERACRAEQDKALETLQGQLEEKARElgHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLI 1223
Cdd:PTZ00121 1056 HEGKAEAKAHVGQDEGLKPSYKDFDFDAKE--DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEA 1133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1224 SSLEEEVSIlnrqvlEKEGESKELKRLVVA-ESEKSQKLEERLRLLQVETASNSARAAERSSAlrEEVQSLRE--EVEKQ 1300
Cdd:PTZ00121 1134 RKAEDARKA------EEARKAEDAKRVEIArKAEDARKAEEARKAEDAKKAEAARKAEEVRKA--EELRKAEDarKAEAA 1205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1301 RVVSENSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcQQLQAEQAAAEKRFREE 1380
Cdd:PTZ00121 1206 RKAEEERKAEEARKAEDAKKA-EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF--ARRQAAIKAEEARKADE 1282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1381 LEQSKQAAgglQAELMRAQRELGELGSLRQKiVEQERAAQQLRAEKASYAEQLSMLKKAhgllAEENRGLGERAnlgrqf 1460
Cdd:PTZ00121 1283 LKKAEEKK---KADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKK----AEEAKKAAEAA------ 1348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1461 leveldqarekyvqelaavrtdaethlaemRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKltaqveqlevfq 1540
Cdd:PTZ00121 1349 ------------------------------KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK------------ 1386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1541 REQTKQVEELSKKLTEHDQasKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAK 1620
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1621 KQQNQKLQEQLQDLEELQKENKELRSEAERLGR---ELQQAGLKTKEAEQ 1667
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKkadEAKKAAEAKKKADE 1514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
872-1691 |
8.71e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 8.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 872 IQQVQEKEVRAQKLVDDLSALQEKMAaTNKEVAcLKTLVLKAgEQQETASLELLKEppRAANRASDQLGEQQgrpFSSTH 951
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLR-REREKA-ERYQALLK-EKREYEGYELLKE--KEALERQKEAIERQ---LASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 952 AAVKAMEREAEQMGGELERLRAALiksQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVE 1031
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLL---EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1032 FAALQEALAhaltEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASgedasgpgtQSETAGKT 1111
Cdd:TIGR02169 328 EAEIDKLLA----EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE---------LKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1112 DAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQAL 1191
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1192 RAKAQDHSKAEEEWKAQVARG---QQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSqkLEERLRLL 1268
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAeaqARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVA--AGNRLNNV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1269 QVETASNSARAAE---RSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL- 1344
Cdd:TIGR02169 553 VVEDDAVAKEAIEllkRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAa 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1345 -EHTSTQALVS---ELLPAKHLCQQLQAEQAAAEKRFREELEQSKQaaggLQAELMRAQRELGelgSLRQKIVEQERAAQ 1420
Cdd:TIGR02169 633 rRLMGKYRMVTlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQR----LRERLEGLKRELS---SLQSELRRIENRLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1421 QLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEvELDQAREKYVQELAAVRTDaethLAEMRQEAQSTSRE 1500
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-SLEQEIENVKSELKELEAR----IEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1501 LEVMTAKYEGAKVKVLEERQRFQEE-RQKLTAQVEQLEvfqreqtkqveelskkltehdqaskvqqQKLKAFQAQRGESQ 1579
Cdd:TIGR02169 781 LNDLEARLSHSRIPEIQAELSKLEEeVSRIEARLREIE----------------------------QKLNRLTLEKEYLE 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1580 QEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKakthydaKKQQNQKLQEQLQDLEE----LQKENKELRSEAERLGREL 1655
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE-------LEEELEELEAALRDLESrlgdLKKERDELEAQLRELERKI 905
|
810 820 830
....*....|....*....|....*....|....*.
gi 2214681115 1656 QQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLR 1691
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
292-771 |
9.75e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 9.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 292 ETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENeLSTALQDK 371
Cdd:TIGR04523 135 ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN-LKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 372 KCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKlatDNTQLQTRVETLE------CERGKQE 445
Cdd:TIGR04523 214 KSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK---IKKQLSEKQKELEqnnkkiKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 446 AQLLAERSRFEDEKQQ--LASLIADLQSSVSNLSQAKEELEQASQA------QGAQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQNQISQNNKIisqlneQISQLKKELTNSESENSEKQRELEEKQN 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEARE--ASLRERDT 595
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSeiKDLTNQDS 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 596 ArqqLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE--------------KAELSQKIGELHACIEASHQEQR 661
Cdd:TIGR04523 451 V---KELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKElkskekelkklneeKKELEEKVKDLTKKISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 662 QVQARVTELE---AQLKAEQQKTTEREKVVQEKAQLQEQLRALEEsLKITKGSLEEEKRRAADALKEQQCRATEMEAESR 738
Cdd:TIGR04523 528 KLESEKKEKEskiSDLEDELNKDDFELKKENLEKEIDEKNKEIEE-LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
490 500 510
....*....|....*....|....*....|...
gi 2214681115 739 SLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSK 639
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
300-891 |
1.80e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.40 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 300 LKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNE 379
Cdd:pfam12128 246 LQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 380 ILQGKLSQLED---QATRLQESPAP----------EKGEVLGDALQLDTLKQEAAKLATDnTQLQTRVETLECERGKQ-- 444
Cdd:pfam12128 326 ALEDQHGAFLDadiETAAADQEQLPswqselenleERLKALTGKHQDVTAKYNRRRSKIK-EQNNRDIAGIKDKLAKIre 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 445 --------------------EAQLLAERSRFEDEKQQLASLIADLQ----------SSVSNLSQAKEELEQASQAQGAQL 494
Cdd:pfam12128 405 ardrqlavaeddlqaleselREQLEAGKLEFNEEEYRLKSRLGELKlrlnqatatpELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 495 TAQLTSMTGLNATLQQRDQELASLK--EQAKKEQAQMLQTMQEQ------------EQAAQGLRQQVEQLSSSLKLKEQQ 560
Cdd:pfam12128 485 AEVERLQSELRQARKRRDQASEALRqaSRRLEERQSALDELELQlfpqagtllhflRKEAPDWEQSIGKVISPELLHRTD 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 561 LE----EAAKEQEAT----RQDHAQQLAIVAEAREASLRERdtaRQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSV 632
Cdd:pfam12128 565 LDpevwDGSVGGELNlygvKLDLKRIDVPEWAASEEELRER---LDKAEEALQSAREKQAAAEEQLVQANGELEKASREE 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 633 TQAQQ--EKAELS------QKIGELHACIEASHQEQRQVQARVTELEAQLKA---------EQQKTTEREKVVQEKAQLQ 695
Cdd:pfam12128 642 TFARTalKNARLDlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQldkkhqawlEEQKEQKREARTEKQAYWQ 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 696 E---QLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQ--EKAGRKGLEAR--IQQL 768
Cdd:pfam12128 722 VvegALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERkiERIAVRRQEVLryFDWY 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 769 EEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTG-QEVQEEAVE 847
Cdd:pfam12128 802 QETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKlATLKEDANS 881
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2214681115 848 IHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSA 891
Cdd:pfam12128 882 EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSG 925
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
216-851 |
3.54e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 3.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 216 RLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAL----LNEKQAASSQEPSELEELRGKNESLTVRLH 291
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSelpeLREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 292 ETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFaNHLQQLQGAFNDLIEEHSkasqEWAEKQARLENELSTALQDK 371
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYE----EYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 372 KCLEEKNEILQGKLSQLEDQATRLQESpAPEKGEVLGDALQLDTLKQEAAKLatdnTQLQTRVETLECERGKQEAQLLAE 451
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKEL-EKRLEELEERHELYEEAKAKKEEL----ERLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 452 R-SRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQ---AQGAQLTAQ-----LTSMTGLNATLQQRDQELASLKEQA 522
Cdd:PRK03918 399 AkEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 523 KKEQAQmLQTMQEQEQAAQGLRQQVEQLSS-SLKLKEQQLEEAAKEqeatrqdhaqqlaivAEAREASLRERDTARQQLE 601
Cdd:PRK03918 479 RKELRE-LEKVLKKESELIKLKELAEQLKElEEKLKKYNLEELEKK---------------AEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 602 TVEKEKDaKLESLQQQLQAANDARDNaqtsvtqAQQEKAELSQKIGEL-HACIEashqeqrQVQARVTELEAQLKaeqqK 680
Cdd:PRK03918 543 SLKKELE-KLEELKKKLAELEKKLDE-------LEEELAELLKELEELgFESVE-------ELEERLKELEPFYN----E 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 681 TTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQcratemEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:PRK03918 604 YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE------ELEKKYSEEEYEELREEYLELSRELAG 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 761 LEARIQQLEEaHQAETEALRHELAEATASQHRAESECERLirevESRQKRFEARQQEEARYGAMFQEQLMalkgektgQE 840
Cdd:PRK03918 678 LRAELEELEK-RREEIKKTLEKLKEELEEREKAKKELEKL----EKALERVEELREKVKKYKALLKERAL--------SK 744
|
650
....*....|.
gi 2214681115 841 VQEEAVEIHSE 851
Cdd:PRK03918 745 VGEIASEIFEE 755
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
605-813 |
5.06e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 5.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 605 KEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTER 684
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 685 ekvvqeKAQLQEQLRALEESLKITK--------------------GSLEEEKRRAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:COG4942 103 ------KEELAELLRALYRLGRQPPlalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 745 EREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEA 813
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
429-820 |
6.55e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.40 E-value: 6.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 429 QLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQAsQAQGAQLTAQLTSMTGLNAtL 508
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-EAELEELREELEKLEKLLQ-L 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 509 QQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREA 588
Cdd:COG4717 128 LPLYQELEALEAELAELPER-LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 589 SLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT-----------SVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQARVTELEAQLKAEQQKTTEREKVvqEKAQLQEQLRALEESLKITKGSLEEEKRRAADAlkeQQCRATEMEAES 737
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEEL--EEEELEELLAALGLPPDLSPEELLELLDRIEEL---QELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 738 RSLMEQREREQKELEQEK--AGRKGLEARIQQLEEAHQAETE--ALRHELAE---------ATASQHRAESECERLIREV 804
Cdd:COG4717 362 ELQLEELEQEIAALLAEAgvEDEEELRAALEQAEEYQELKEEleELEEQLEEllgeleellEALDEEELEEELEELEEEL 441
|
410
....*....|....*.
gi 2214681115 805 ESRQKRFEARQQEEAR 820
Cdd:COG4717 442 EELEEELEELREELAE 457
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
998-1695 |
8.78e-10 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 64.20 E-value: 8.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 998 QERGQAQADLAQE--KAAKAELEmRLQNTLNEQRVEFAALQEAL-----AHALTEK-----EGTDQELAKLRGQEAAQRT 1065
Cdd:COG3096 377 LAEAEARLEAAEEevDSLKSQLA-DYQQALDVQQTRAIQYQQAVqalekARALCGLpdltpENAEDYLAAFRAKEQQATE 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1066 ELKELQQTLEQLKI---------QLVKKekehPAGGASGEDASGPGTQS-ETAGKTDAPGPELQALRAEISKLEQQCQQQ 1135
Cdd:COG3096 456 EVLELEQKLSVADAarrqfekayELVCK----IAGEVERSQAWQTARELlRRYRSQQALAQRLQQLRAQLAELEQRLRQQ 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1136 QQQV---EGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEW-KAQVAR 1211
Cdd:COG3096 532 QNAErllEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWlAAQDAL 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1212 GQQEAERKSSLISSleEEVSILNRQVLEKEGESKELKRLVVaesEKSQKLEERLRLLQVETASNSAR------------- 1278
Cdd:COG3096 612 ERLREQSGEALADS--QEVTAAMQQLLEREREATVERDELA---ARKQALESQIERLSQPGGAEDPRllalaerlggvll 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1279 -----------AAERS---------------SALREEVQSL-----------------------REEVEKQRVVSENSRQ 1309
Cdd:COG3096 687 seiyddvtledAPYFSalygparhaivvpdlSAVKEQLAGLedcpedlyliegdpdsfddsvfdAEELEDAVVVKLSDRQ 766
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1310 -------EL-----ASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVsellpAKHLCQQlqaeqaaaekrF 1377
Cdd:COG3096 767 wrysrfpEVplfgrAAREKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSQFV-----GGHLAVA-----------F 830
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1378 REELEQSKQAaggLQAELMRAQRELgelgslrqkiVEQERAAQQLRAEKASYAEQLSMLKKAHG---LLAEEnrGLGERa 1454
Cdd:COG3096 831 APDPEAELAA---LRQRRSELEREL----------AQHRAQEQQLRQQLDQLKEQLQLLNKLLPqanLLADE--TLADR- 894
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1455 nlgRQFLEVELDQARE--KYVQELAAVRTDAETHLAEMRQEAQStsreLEVMTAKYEGAKvkvleerqrfqEERQKLTAQ 1532
Cdd:COG3096 895 ---LEELREELDAAQEaqAFIQQHGKALAQLEPLVAVLQSDPEQ----FEQLQADYLQAK-----------EQQRRLKQQ 956
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1533 VEQL-EVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQkeqaaehyklqme 1611
Cdd:COG3096 957 IFALsEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS------------- 1023
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1612 kAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERlgRELQQAGLKTKeaeQTCRHLTAQVRSLEAQVAHADQQLR 1691
Cdd:COG3096 1024 -LKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRR--DELHEELSQNR---SRRSQLEKQLTRCEAEMDSLQKRLR 1097
|
....
gi 2214681115 1692 DLGK 1695
Cdd:COG3096 1098 KAER 1101
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
458-1077 |
9.27e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 9.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 458 EKQQLASLIADLQSSVSNLSQAKEELEQASQaqgaqltaQLTSMTGLNATLQQRDQELASLKEQakkEQAQMLQTMQEQE 537
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDARE--------QIELLEPIRELAERYAAARERLAEL---EYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 538 QAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQqlaIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQ 617
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDE---LEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 618 LQAANDARdnaqtsvTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQqktterekvvQEKAQLQEQ 697
Cdd:COG4913 365 EALLAALG-------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR----------RELRELEAE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 698 LRALEESlkitKGSLEEEKRRAADALKEqQCRATEME----AEsrsLMEQREREQK------------------ELEQEK 755
Cdd:COG4913 428 IASLERR----KSNIPARLLALRDALAE-ALGLDEAElpfvGE---LIEVRPEEERwrgaiervlggfaltllvPPEHYA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 756 AGRKGLEARiqQLEEAHQAEtealrhELAEATASQHRAESECERLIREVESRQKRFEA--RQQEEARYGAMFQEQLMALK 833
Cdd:COG4913 500 AALRWVNRL--HLRGRLVYE------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwlEAELGRRFDYVCVDSPEELR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 834 GE-----KTGQEVQEEAVEIHSEGQPGQQQSQLAQlhaslaKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKT 908
Cdd:COG4913 572 RHpraitRAGQVKGNGTRHEKDDRRRIRSRYVLGF------DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 909 LVLKAGEQQETASLELLKeppRAANRASDQLGEQQGRpFSSTHAAVKAMEREAEQMGGELERLRAALiksqgqqqeergq 988
Cdd:COG4913 646 RREALQRLAEYSWDEIDV---ASAEREIAELEAELER-LDASSDDLAALEEQLEELEAELEELEEEL------------- 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 989 qerevARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELK 1068
Cdd:COG4913 709 -----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLN 783
|
....*....
gi 2214681115 1069 ELQQTLEQL 1077
Cdd:COG4913 784 RAEEELERA 792
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
327-701 |
1.38e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 63.82 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 327 EFANHLQQLQGAFNDLIEEHSKASqEW----------AEKQARLENELStALQDKkcLEEKNEILQGKLSQLEDQATRLQ 396
Cdd:COG3096 310 EMARELEELSARESDLEQDYQAAS-DHlnlvqtalrqQEKIERYQEDLE-ELTER--LEEQEEVVEEAAEQLAEAEARLE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 397 ESPApekgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLE-CERGKQEAQLLAER-----SRFEDEKQQLASLIADLQ 470
Cdd:COG3096 386 AAEE----EVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEkARALCGLPDLTPENaedylAAFRAKEQQATEEVLELE 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 471 SSVSNLSQAKEELEQASQAqgaqltaqLTSMTGlnatlqqrdqelASLKEQAKKEQAQMLQTMQEQEQAAQglrqQVEQL 550
Cdd:COG3096 462 QKLSVADAARRQFEKAYEL--------VCKIAG------------EVERSQAWQTARELLRRYRSQQALAQ----RLQQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 551 ssslklkEQQLEEAakEQEATRQDHAQQLAivaEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:COG3096 518 -------RAQLAEL--EQRLRQQQNAERLL---EEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 631 SVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEA-------QLKAEQQKTTEREKVVQEKAQLQEQLRAL 701
Cdd:COG3096 586 QLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEvtaamqqLLEREREATVERDELAARKQALESQIERL 663
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
508-927 |
2.54e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.89 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 508 LQQRDQELASLKEQAKKEQAQMLQ-------------TMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEA---T 571
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKElekkhqqlceeknALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESrleE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAR-------EASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQ 644
Cdd:pfam01576 87 EEERSQQLQNEKKKMqqhiqdlEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 645 KIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ----EKAQLQEQ---LRALEESLKITKGSLEEEKR 717
Cdd:pfam01576 167 NLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRklegESTDLQEQiaeLQAQIAELRAQLAKKEEELQ 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 718 RAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEahqaETEALRHELAE---ATASQH--- 791
Cdd:pfam01576 247 AALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGE----ELEALKTELEDtldTTAAQQelr 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 792 -RAESECERLIREVESRQKRFEARQQEEARYGAM----FQEQLMALKG-----EKTGQEVQEEAVEIHSEGQPGQQQSQl 861
Cdd:pfam01576 323 sKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaleeLTEQLEQAKRnkanlEKAKQALESENAELQAELRTLQQAKQ- 401
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 862 aQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVlkagEQQETASLELLKE 927
Cdd:pfam01576 402 -DSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL----NEAEGKNIKLSKD 462
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-1356 |
3.43e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 62.28 E-value: 3.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 441 RGKQEAQLLAERSRFEDEKQQLAS--LIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNAtLQQRDQELASL 518
Cdd:PRK04863 282 RVHLEEALELRRELYTSRRQLAAEqyRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 519 KEQAKkEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLK---------LKEQQLEEAAKEQEATRQDHAQQLAIVAEAREAS 589
Cdd:PRK04863 361 EERLE-EQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaLDVQQTRAIQYQQAVQALERAKQLCGLPDLTADN 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 590 LRERdtaRQQLETVEKEKDAKLESLQQQL---QAANDARDNAQTSVTQA--QQEKAELSQKIGELhaciEASHQEQRQVQ 664
Cdd:PRK04863 440 AEDW---LEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIagEVSRSEAWDVAREL----LRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 665 ARVTELEAQLKaeqqkttEREKVVQEKAQLQEQLRALEESLKITKGSLEEekrrAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:PRK04863 513 EQLQQLRMRLS-------ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDE----LEQLQEELEARLESLSESVSEARERR 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 745 EREQKELEQEKAGRKGLEARIQQLEEAHQA---------ETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQ 815
Cdd:PRK04863 582 MALRQQLEQLQARIQRLAARAPAWLAAQDAlarlreqsgEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 816 QEEARYGAMFQEQLMALKGEKTGQEVQE--EAVEIHSEGqpgqqqsQLAQLHASLAKAIqqvqekevraqkLVDDLSALQ 893
Cdd:PRK04863 662 ERLSQPGGSEDPRLNALAERFGGVLLSEiyDDVSLEDAP-------YFSALYGPARHAI------------VVPDLSDAA 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 894 EKMAAtnkEVACLKTLVLKAGEQQETAS----LELLkeppraANRASDQLGEQQGRpfSSTHAAVKAMEREAEqmggelE 969
Cdd:PRK04863 723 EQLAG---LEDCPEDLYLIEGDPDSFDDsvfsVEEL------EKAVVVKIADRQWR--YSRFPEVPLFGRAAR------E 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 970 RLRAALiksqgqqqeergqqerevarltqergQAQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHAltekEGT 1049
Cdd:PRK04863 786 KRIEQL--------------------------RAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFE----ADP 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1050 DQELAKLRGQEAAQRTELKELQQTLEQLKIQLvKKEKEHPAGgasgedasgpgtqsetagktdapgpeLQALRAEISKLE 1129
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQL-EQAKEGLSA--------------------------LNRLLPRLNLLA 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1130 qqcqqqqqqVEGLTHSLkseRACRAEQDKAletlqgqlEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQV 1209
Cdd:PRK04863 889 ---------DETLADRV---EEIREQLDEA--------EEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQ 948
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1210 ARGQQEAERKSSLIS--------SLEEEVSILNRqvlEKEGESKELKRLVVAESEKSQkLEERLRLLQVETASNSARAAE 1281
Cdd:PRK04863 949 QTQRDAKQQAFALTEvvqrrahfSYEDAAEMLAK---NSDLNEKLRQRLEQAEQERTR-AREQLRQAQAQLAQYNQVLAS 1024
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1282 ---RSSALREEVQSLREEVEKQRVVSENSRQELAsqAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:PRK04863 1025 lksSYDAKRQMLQELKQELQDLGVPADSGAEERA--RARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL 1100
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
546-1345 |
4.20e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.91 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 546 QVEQLSSSLKLKEQQLEEAAKEqeatrqdhAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQqlqaANDAR 625
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEEEAAG--------SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ----AKKAL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 626 DNAQTSvtQAQQEKAELSQKIGELHACIEASHQEQRQVQARVtELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESL 705
Cdd:pfam02463 211 EYYQLK--EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ-EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 706 KITKGSLEEEKRRAADALKEQQCRATEMEAESrslmeqrEREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAE 785
Cdd:pfam02463 288 LKLLAKEEEELKSELLKLERRKVDDEEKLKES-------EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 786 ATASQHRAESECERLIREVESRQKRFEARQQEearygamfQEQLMALKGEKtGQEVQEeaveihsegqpgqqQSQLAQLH 865
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKL--------KEEELELKSEE-EKEAQL--------------LLELARQL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 866 ASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEpprAANRASDQLGEQQGR 945
Cdd:pfam02463 418 EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL---VKLQEQLELLLSRQK 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 946 PFSSTHAAVKAMEREA-EQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNT 1024
Cdd:pfam02463 495 LEERSQKESKARSGLKvLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1025 LNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQ 1104
Cdd:pfam02463 575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1105 SETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASA 1184
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1185 QRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEER 1264
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1265 LRLLQVETASNSARAAERSSALREEVQSLrEEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL 1344
Cdd:pfam02463 815 ELLEEEQLLIEQEEKIKEEELEELALELK-EEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
.
gi 2214681115 1345 E 1345
Cdd:pfam02463 894 K 894
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1202-1695 |
4.24e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 62.05 E-value: 4.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1202 EEEWKAQVARGQQEAERKSSlissleEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRllqvETASNSARAAE 1281
Cdd:pfam05483 103 QKENKLQENRKIIEAQRKAI------QELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLK----ETCARSAEKTK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1282 RSSALREEVQSLREEV-----------EKQRVVSENSRQELASQAERAEELGQEL-KAWQEKFFQKEQALSALQLEHTST 1349
Cdd:pfam05483 173 KYEYEREETRQVYMDLnnniekmilafEELRVQAENARLEMHFKLKEDHEKIQHLeEEYKKEINDKEKQVSLLLIQITEK 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1350 QALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAEL----MRAQRELGELGSLRQKIVEQERAAQQLRAE 1425
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELedikMSLQRSMSTQKALEEDLQIATKTICQLTEE 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1426 KASYAEQLSMLKKAHGLLAEENRG----LGERANLGRQFLEVELDQarekyVQELAAVRTDAETHLAEMRQEAQSTSREL 1501
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEAttcsLEELLRTEQQRLEKNEDQ-----LKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1502 EVMTaKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQE 1581
Cdd:pfam05483 408 EELK-KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1582 VQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQkenKELRSEAERLGRELQQAGLK 1661
Cdd:pfam05483 487 NIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE---MNLRDELESVREEFIQKGDE 563
|
490 500 510
....*....|....*....|....*....|....*...
gi 2214681115 1662 TK----EAEQTCRHLTAQVRSLEAQVAHADQQLRDLGK 1695
Cdd:pfam05483 564 VKckldKSEENARSIEYEVLKKEKQMKILENKCNNLKK 601
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1375-1697 |
4.90e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 4.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1375 KRFREELEQSKQAAGGLQAelMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGllaeenrglgera 1454
Cdd:TIGR02168 213 ERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS------------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1455 nlgrqflevELDQAREKYVQELAAVRTDaethLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVE 1534
Cdd:TIGR02168 278 ---------ELEEEIEELQKELYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1535 QLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAK 1614
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1615 THydAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLG 1694
Cdd:TIGR02168 425 EL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
...
gi 2214681115 1695 KFQ 1697
Cdd:TIGR02168 503 GFS 505
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
509-816 |
6.34e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 61.29 E-value: 6.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 509 QQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDH-AQQLAIVAEARE 587
Cdd:pfam17380 303 QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEiAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 588 ASL---RERDTARQQLETVEKEKdakLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQ 664
Cdd:pfam17380 383 LQMerqQKNERVRQELEAARKVK---ILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQ 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 665 ARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRaleeslKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQR 744
Cdd:pfam17380 460 QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRR------KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 745 EREqkELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEatasqhrAESECERLIREVESRQKRFEARQQ 816
Cdd:pfam17380 534 RRR--EAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME-------REREMMRQIVESEKARAEYEATTP 596
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
412-974 |
8.47e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 8.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSrfEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL--EELRAELARLEAELERLEARLDALREELDELEAQIR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 AQLTAQLtsmtglnatlqqrdqelaslkEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4913 334 GNGGDRL---------------------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEkdakLESLQQQlqaandardnaQTSVTQAQQE-KAELSQK----- 645
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRRELRELEAE----IASLERR-----------KSNIPARLLAlRDALAEAlglde 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 646 -----IGELhacIEASHQEQR--------------------QVQARVTELEAQLKAEQQKTTERekvVQEKAQLQEQLRA 700
Cdd:COG4913 458 aelpfVGEL---IEVRPEEERwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVYER---VRTGLPDPERPRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 701 LEESL--KIT------KGSLEEEKRRAADALKeqqCR-ATEMEAESRSLMEQREREQKELEQEKAGRKGLEAR------- 764
Cdd:COG4913 532 DPDSLagKLDfkphpfRAWLEAELGRRFDYVC---VDsPEELRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRyvlgfdn 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 765 IQQLeeahqaetEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygAMFQEQLMALKGEKTGQEVQEE 844
Cdd:COG4913 609 RAKL--------AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA----EYSWDEIDVASAEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 845 AVEIHSEgqpgqqQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLEL 924
Cdd:COG4913 677 LERLDAS------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2214681115 925 LKEppRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQmggELERLRAA 974
Cdd:COG4913 751 LEE--RFAAALGDAVERELRENLEERIDALRARLNRAEE---ELERAMRA 795
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
332-809 |
8.65e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 8.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 332 LQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEK----NEILQGKLSQLEDQATRLQES--------- 398
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarnqNSMYMRQLSDLESTVSQLRSElreakrmye 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 399 ---PAPEKGEVLGDAlQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERS---RFEDEKQQLASLIADLQSS 472
Cdd:pfam15921 342 dkiEELEKQLVLANS-ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEqnkRLWDRDTGNSITIDHLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 473 VSNLSQAKEELEQ-----ASQAQGaQLTAQLTSMTGLNATLQQRDQELASLkEQAKKEQAQMLQTMQEQEQAAQGLRQQV 547
Cdd:pfam15921 421 LDDRNMEVQRLEAllkamKSECQG-QMERQMAAIQGKNESLEKVSSLTAQL-ESTKEMLRKVVEELTAKKMTLESSERTV 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 548 EQLSSSLKLKEQQLEEAAKE--QEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDAR 625
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEitKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 626 DNAQTSVTQAQQEKAELSQKIG-------ELHACIEASHQEQRQVQARVTELEAQ-----------LKAEQQKTTEREKV 687
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINdrrlelqEFKILKDKKDAKIRELEARVSDLELEkvklvnagserLRAVKDIKQERDQL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 688 VQEKAQLQEQLRALEESLKITKGSLE---EEKRRAADALKEQQCRATEMEAESRSLMEQRERE-----------QKELEQ 753
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKRNFRnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgmQKQITA 738
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 754 EKAGRKGLEARIQQLEEAH----------QAETEALRHELAEATASQHRAESECErLIREVESRQK 809
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMtnankekhflKEEKNKLSQELSTVATEKNKMAGELE-VLRSQERRLK 803
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
463-681 |
1.37e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 463 ASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQG 542
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 543 LRQQVEQLSSSLKlKEQQLEEAAKEQEATRQDHAQQLAI-------VAEAREASLRERDTARQQLETVEKEKDAKLESLQ 615
Cdd:COG4942 99 LEAQKEELAELLR-ALYRLGRQPPLALLLSPEDFLDAVRrlqylkyLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 616 QQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKT 681
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1117-1650 |
1.55e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALEtlqgQLEEKARELGHNQAaSASAQRELQALRAKAQ 1196
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE----ELEEKVKELKELKE-KAEEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSilnrqvlEKEGESKELKRlVVAESEKSQKLEERLRLLQVETASNS 1276
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLE-------ELKKKLKELEK-RLEELEERHELYEEAKAKKEELERLK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1277 ARAAERSSalrEEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALvsEL 1356
Cdd:PRK03918 379 KRLTGLTP---EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK--EL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1357 LPAKHLcqqLQAEQAAAEKRFREELEQSKQAAGGLQAELMRaQRELGELGSLRQKIVEQERAAQQLRAEKASY-AEQLSM 1435
Cdd:PRK03918 454 LEEYTA---ELKRIEKELKEIEEKERKLRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNLEELEKkAEEYEK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1436 LKKAHGLLAEENRGLGERANLGRQF------LEVELDQAREkyvqELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYE 1509
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEELkkklaeLEKKLDELEE----ELAELLKELEELGFESVEELEERLKELEPFYNEYL 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1510 GAKvKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQasKVQQQKLKAFQAQRGESQQEVQRLQTQL 1589
Cdd:PRK03918 606 ELK-DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLELSRELAGLRAEL 682
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1590 NELQAQLSQKEQAAEHYKLQMEKAKThydaKKQQNQKLQEQLQDLEELQKENKELRSEAER 1650
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEEREK----AKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1517-1727 |
2.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1517 EERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQL 1596
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1597 SQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGL----KTKEAEQTCRHL 1672
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtlrsKVAQLELQIASL 398
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1673 TAQVRSLEAQVAHADQQLRDLGkfQVATDALKSREPQVKPQLDLSIDSLDLSLEE 1727
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQ--QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1117-1595 |
2.37e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERacRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHS-KAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASN 1275
Cdd:COG4913 334 GNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1276 SARAAERSSALREEVQSLREeveKQRVVSENS---RQELASQAERAE----------ELGQELKAWQ------------- 1329
Cdd:COG4913 414 LRDLRRELRELEAEIASLER---RKSNIPARLlalRDALAEALGLDEaelpfvgeliEVRPEEERWRgaiervlggfalt 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1330 ----EKFFQkeQALSALQLEHTSTQaLVSELLPAKHlcqQLQAEQAAAEKRFREELEQSKQAAGG-LQAEL--------- 1395
Cdd:COG4913 491 llvpPEHYA--AALRWVNRLHLRGR-LVYERVRTGL---PDPERPRLDPDSLAGKLDFKPHPFRAwLEAELgrrfdyvcv 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1396 ------------------MRAQRELGELG-------------SLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLA 1444
Cdd:COG4913 565 dspeelrrhpraitragqVKGNGTRHEKDdrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1445 EENRGLGERANLgrQFLEVELDQAREKYV---QELAAVRTD------AETHLAEMRQEAQSTSRELEVMTAKYEGAKvkv 1515
Cdd:COG4913 645 ERREALQRLAEY--SWDEIDVASAEREIAeleAELERLDASsddlaaLEEQLEELEAELEELEEELDELKGEIGRLE--- 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1516 lEERQRFQEERQKLTAQVEQLEvfQREQTKQVEELSKKLTEHDQAsKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQ 1595
Cdd:COG4913 720 -KELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1158-1680 |
2.38e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1158 KALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSL---ISSLEEEVSILN 1234
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLegsKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1235 RQVLEKEGESKELKRLV--VAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEkqrvvsensrqELA 1312
Cdd:PRK03918 266 ERIEELKKEIEELEEKVkeLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-----------ELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1313 SQAERAEELGQELKAWQEKffqkeqaLSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQaagglq 1392
Cdd:PRK03918 335 EKEERLEELKKKLKELEKR-------LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE------ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1393 aELMRAQREL-GELGSLRQKIVEQERAAQQLRAEK-------------------ASYAEQLSMLKKAHGLLAEENRGLGE 1452
Cdd:PRK03918 402 -EIEEEISKItARIGELKKEIKELKKAIEELKKAKgkcpvcgrelteehrkellEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1453 RANLGRQFLEVELDQAREKYV-QELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTA 1531
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKELaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1532 QVEQLEVFQREQT-----------KQVEELSKKLTEHDQASKvQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKE 1600
Cdd:PRK03918 561 LEKKLDELEEELAellkeleelgfESVEELEERLKELEPFYN-EYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1601 QAAEHYKLQMEKAKTHYDAKkqqnqklqeqlqDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLE 1680
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEE------------EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
798-1331 |
2.89e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 798 ERLIREVESRQKRFEArqQEEARYGAMFQEQLMALKgektgQEVQEEAVEI-HSEGQPGQQQSQLAQLHASLAKAIQQVQ 876
Cdd:PRK02224 179 ERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLE-----SELAELDEEIeRYEEQREQARETRDEADEVLEEHEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 877 EKEVraqkLVDDLSALQEKMAATNKEVACLKTLVlkagEQQETASLELLKEppRAANRASDQLGEQQGrpfSSTHAAVKA 956
Cdd:PRK02224 252 ELET----LEAEIEDLRETIAETEREREELAEEV----RDLRERLEELEEE--RDDLLAEAGLDDADA---EAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 957 MEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRlQNTLNEQRVEFAALQ 1036
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELR 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1037 EALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAG-----GASGEDASGPGTQSETAGKT 1111
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGkcpecGQPVEGSPHVETIEEDRERV 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1112 DAPGPELQALRAEISKLEqqcqqqqqqveglthslksERACRAEQDKALETLQGQLEEKAR---ELGHNQAASASAQRE- 1187
Cdd:PRK02224 478 EELEAELEDLEEEVEEVE-------------------ERLERAEDLVEAEDRIERLEERREdleELIAERRETIEEKREr 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1188 LQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEvsilnRQVLEKEGESKELKRLVVAESEKSQKLEERLRL 1267
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK-----LAELKERIESLERIRTLLAAIADAEDEIERLRE 613
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1268 LQVETASNSARAAERSSALREEVQSLREEVEKQRVvsENSRQELASQAERAEELGQELKAWQEK 1331
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEYLEQVEEKLDELREE 675
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
252-817 |
2.89e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 59.42 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 252 MQQRIDHLALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKIS----QLSEENGDLSFKVRE 327
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAarkqELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 328 FANHLQQLQGafndlieEHSKASQEWAEKQARLENELST--ALQ-DKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKG 404
Cdd:pfam01576 87 EEERSQQLQN-------EKKKMQQHIQDLEEQLDEEEAArqKLQlEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 405 EVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQllaeRSRFEDEKQQLASLIADLQSSVSNLSQAKEELE 484
Cdd:pfam01576 160 RISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKG----RQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 485 QASQAQGAQLTAQLTSM---TGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkEQQL 561
Cdd:pfam01576 236 AQLAKKEEELQAALARLeeeTAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL---EDTL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 562 EEAAKEQEATRQDHAQqlaiVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:pfam01576 313 DTTAAQQELRSKREQE----VTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 642 LSQKIGELHACIEASHQEQRQVQARVTELEAQL-KAEQQKTTEREKVVQEKAQLQEQLRALEE----SLKITK--GSLEE 714
Cdd:pfam01576 389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLsESERQRAELAEKLSKLQSELESVSSLLNEaegkNIKLSKdvSSLES 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 715 EKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLeeahQAETEALRHELAEATASQHRAE 794
Cdd:pfam01576 469 QLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTL----QAQLSDMKKKLEEDAGTLEALE 544
|
570 580
....*....|....*....|...
gi 2214681115 795 SECERLIREVESRQKRFEARQQE 817
Cdd:pfam01576 545 EGKKRLQRELEALTQQLEEKAAA 567
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
274-698 |
3.49e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 3.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 274 SELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGD----LSFKVREFANHLQQLQGAFNDLIEEHSKA 349
Cdd:TIGR04523 218 SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKikkqLSEKQKELEQNNKKIKELEKQLNQLKSEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 350 SQEWAEKQARLENELSTAL--QDKKCLEEKNEILQG--KLSQLEDQATRLQ------ESPAPEKGEVLGDAL-QLDTLKQ 418
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKSELknQEKKLEEIQNQISQNnkIISQLNEQISQLKkeltnsESENSEKQRELEEKQnEIEKLKK 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 419 EAAKLATDNTQLQTRVETLECERGKQEAQ----------LLAERSRFEDEKQQLASLIADLQSSVSNLSQAK-------E 481
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEKLnqqkdeqikkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkeliiK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 482 ELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELaslkeqakKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQL 561
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL--------KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 562 EEAAKEQEatrqdhaqqLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:TIGR04523 530 ESEKKEKE---------SKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 642 LSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKtteREKVVQEKAQLQEQL 698
Cdd:TIGR04523 601 LIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSK---KNKLKQEVKQIKETI 654
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
305-675 |
4.81e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 305 SQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGK 384
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 385 LSQLEDQATRLQESpAPEKGEVLGDALQ-LDTLKQEAAKLATDNT-QLQTRVETLECERGKQEAQLLAErsrfEDEKQQL 462
Cdd:TIGR02169 246 LASLEEELEKLTEE-ISELEKRLEEIEQlLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEK----ERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 463 ASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAqltsmtgLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQG 542
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 543 LRQQVEQLsSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKekdaKLESLQQQLQAAN 622
Cdd:TIGR02169 394 LEKLKREI-NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW----KLEQLAADLSKYE 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 623 DARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLK 675
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1520-1742 |
8.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 8.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1520 QRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQK 1599
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1600 EQAAEHYKLQMEKAKTHYDAKK----QQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQ 1675
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEaqleELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1676 VRSLEAQVAHADQQLRDLGKFQVATDALKSREPQVKPQLDLSIDSLDLSLEEGTPCSVASKLPRTQP 1742
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
262-864 |
8.61e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 8.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 262 LNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNL-----------------------KTEKSQMDRKIS------ 312
Cdd:pfam05483 108 LQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLikennatrhlcnllketcarsaeKTKKYEYEREETrqvymd 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 313 -----------------QLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQ----EWAEKQARLEN--------- 362
Cdd:pfam05483 188 lnnniekmilafeelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSllliQITEKENKMKDltflleesr 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 363 ------ELSTALQDKKcLEEKNEILQGKLSQLEDQATRLQESPAPEKgeVLGDALQL------------DTLKQEAAKLA 424
Cdd:pfam05483 268 dkanqlEEKTKLQDEN-LKELIEKKDHLTKELEDIKMSLQRSMSTQK--ALEEDLQIatkticqlteekEAQMEELNKAK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 425 TDNTQLQTRVETLECergKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLsqakEELEQASQAQGAQLtAQLTSMTGL 504
Cdd:pfam05483 345 AAHSFVVTEFEATTC---SLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL----EEMTKFKNNKEVEL-EELKKILAE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 505 NATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEatrQDHAQQLAIVAE 584
Cdd:pfam05483 417 DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE---KEKLKNIELTAH 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 585 AREASLRERDTARQQLETV--EKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE----KAELSQKIGELHACIEASHQ 658
Cdd:pfam05483 494 CDKLLLENKELTQEASDMTleLKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDElesvREEFIQKGDEVKCKLDKSEE 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 659 EQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKitKGSLEEEKRRAADALKEQQCRaTEMEAESR 738
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK--KKGSAENKQLNAYEIKVNKLE-LELASAKQ 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 739 SLMEQREREQKELEQEKAGRKGLearIQQLEEAHQAETEALR----------HELAEATASQHRAESECERLIREVESRQ 808
Cdd:pfam05483 651 KFEEIIDNYQKEIEDKKISEEKL---LEEVEKAKAIADEAVKlqkeidkrcqHKIAEMVALMEKHKHQYDKIIEERDSEL 727
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 809 KRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQL 864
Cdd:pfam05483 728 GLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAIL 783
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
272-908 |
1.01e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 57.75 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 272 EPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREfanhlqqlqgAFNDLIEEHSKASQ 351
Cdd:TIGR00606 246 ELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE----------QLNDLYHNHQRTVR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 352 EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQ--LDTLKQEAAKLATDNTQ 429
Cdd:TIGR00606 316 EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRleLDGFERGPFSERQIKNF 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 430 LQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQ 509
Cdd:TIGR00606 396 HTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 510 QRDQEL-ASLKEQAKKEQAQMLQTMQEQEQAaqgLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQdhaqqlaivaeaREA 588
Cdd:TIGR00606 475 ELDQELrKAERELSKAEKNSLTETLKKEVKS---LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ------------MEM 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 589 SLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDnaqtSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVT 668
Cdd:TIGR00606 540 LTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED----WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 669 ELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLK----ITKGSLEEEKRRAADALKEQQC-----RATEMEAESRS 739
Cdd:TIGR00606 616 SKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKqramLAGATAVYSQFITQLTDENQSCcpvcqRVFQTEAELQE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 740 LMEQRER-------EQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFE 812
Cdd:TIGR00606 696 FISDLQSklrlapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 813 ARQQEEarygamfQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:TIGR00606 776 TIMPEE-------ESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN 848
|
650
....*....|....*.
gi 2214681115 893 QEKMAATNKEVACLKT 908
Cdd:TIGR00606 849 RKLIQDQQEQIQHLKS 864
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
328-674 |
1.20e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 57.27 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 328 FANHLQQLQGAFNDL---IEEHSKASQEWAEKQARLENELSTALQDKKCLEekneilqgklSQLEDQATRLqespapekg 404
Cdd:PRK04863 346 QQEKIERYQADLEELeerLEEQNEVVEEADEQQEENEARAEAAEEEVDELK----------SQLADYQQAL--------- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 405 evlgDALQLDTLKQEAAKLATDNTQLQTRVETLECErgkqeaQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELE 484
Cdd:PRK04863 407 ----DVQQTRAIQYQQAVQALERAKQLCGLPDLTAD------NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 485 QASQAQ---GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQL 561
Cdd:PRK04863 477 QAYQLVrkiAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDEL 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 562 EEAAKEQEATRQDHAQQLAIVAEAREaslrerdTARQQLETVeKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRM-------ALRQQLEQL-QARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQD 628
|
330 340 350
....*....|....*....|....*....|...
gi 2214681115 642 LSQKIGELHACIEASHQEQRQVQARVTELEAQL 674
Cdd:PRK04863 629 VTEYMQQLLERERELTVERDELAARKQALDEEI 661
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
433-775 |
1.32e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 57.27 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 433 RVETLECERGKQEAQLLAERSRFEDEKQQLA-------SLIADLQSSVSNLS--------QAK--------EELEQASQA 489
Cdd:COG3096 286 RALELRRELFGARRQLAEEQYRLVEMARELEelsaresDLEQDYQAASDHLNlvqtalrqQEKieryqedlEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 490 QGAQLTAQLTSMTGLNATLQQRDQELASLKEQ-AKKEQA-QMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEE---- 563
Cdd:COG3096 366 QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQlADYQQAlDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDylaa 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 564 -AAKEQEATRQ--DHAQQLAIVAEAReaslRERDTARQQLETV--EKEKDAKLESLQQQLQAANDARDNAQTsVTQAQQE 638
Cdd:COG3096 446 fRAKEQQATEEvlELEQKLSVADAAR----RQFEKAYELVCKIagEVERSQAWQTARELLRRYRSQQALAQR-LQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 639 KAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRR 718
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 719 A------ADALKEQQCRATEMEAESRSLME------QREREQKELEQEKAGRKG-LEARIQQLEEAHQAE 775
Cdd:COG3096 601 ApawlaaQDALERLREQSGEALADSQEVTAamqqllEREREATVERDELAARKQaLESQIERLSQPGGAE 670
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
376-593 |
1.79e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 376 EKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRF 455
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQLASLIADLQS-----------SVSNLSQAK------EELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASL 518
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpplalllSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRER 593
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
371-913 |
1.87e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 371 KKCLEEKNEILQGKLSQLEDQATRLQESPAPEKgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECE---------- 440
Cdd:TIGR00618 207 TLCTPCMPDTYHERKQVLEKELKHLREALQQTQ-QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQeavleetqer 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 441 --RGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASL 518
Cdd:TIGR00618 286 inRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 519 KEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQ 598
Cdd:TIGR00618 366 SIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 599 QLETVEKEKDAKlESLQQQLQAANDARdnaqtsvTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQ 678
Cdd:TIGR00618 446 AITCTAQCEKLE-KIHLQESAQSLKER-------EQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 679 QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEE-KRRAADALKEQQCRATEMEAESR--SLMEQREREQKELEQ-E 754
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSErKQRASLKEQMQEIQQSFSILTQCdnRSKEDIPNLQNITVRlQ 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 755 KAGRKGLEARIQQLEEAHqAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKG 834
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQH-ALLRKLQPEQDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 835 EKTGQEVQEEAVEIHSEGQP----GQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLV 910
Cdd:TIGR00618 676 ASRQLALQKMQSEKEQLTYWkemlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755
|
...
gi 2214681115 911 LKA 913
Cdd:TIGR00618 756 LKA 758
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
429-820 |
1.91e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.89 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 429 QLQTRVETLECERGKQEAQLLAERSRFEDEKQQLaSLIADLQSSVSNLS---------QAKEELEQASQAQG--AQLTAQ 497
Cdd:PRK04863 841 QLNRRRVELERALADHESQEQQQRSQLEQAKEGL-SALNRLLPRLNLLAdetladrveEIREQLDEAEEAKRfvQQHGNA 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 498 LTSMTGLNATLQQRDQELASLKEQAKKEQaQMLQTMQEQEQAAQGLRQQVEQLSSSLKlkEQQLEEAAKEQEATRQDHAQ 577
Cdd:PRK04863 920 LAQLEPIVSVLQSDPEQFEQLKQDYQQAQ-QTQRDAKQQAFALTEVVQRRAHFSYEDA--AEMLAKNSDLNEKLRQRLEQ 996
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 578 qlaivAEAreaslrERDTARQQLetveKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSqkigeLHACIEAsh 657
Cdd:PRK04863 997 -----AEQ------ERTRAREQL----RQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG-----VPADSGA-- 1054
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 qeQRQVQARVTELEAQLKAEQQKTTEREKVVQ----EKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEM 733
Cdd:PRK04863 1055 --EERARARRDELHARLSANRSRRNQLEKQLTfceaEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVER 1132
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 734 EAESR-----SLMEQREREQKELEQEKAGRKGLEARIQQL---EEAHQAET-------------EALRHELAEAT---AS 789
Cdd:PRK04863 1133 RLHRRelaylSADELRSMSDKALGALRLAVADNEHLRDVLrlsEDPKRPERkvqfyiavyqhlrERIRQDIIRTDdpvEA 1212
|
410 420 430
....*....|....*....|....*....|.
gi 2214681115 790 QHRAESECERLIREVESRQKRFEARQQEEAR 820
Cdd:PRK04863 1213 IEQMEIELSRLTEELTSREQKLAISSESVAN 1243
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1518-1693 |
1.96e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1518 ERQRFQEER-QKLTAQVEQLEVFQ-----REQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNE 1591
Cdd:COG1196 206 ERQAEKAERyRELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1592 LQAQLSQKEQAAEhyklQMEKAKTHYDAKKQQNQKLQEQLQ-DLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCR 1670
Cdd:COG1196 286 AQAEEYELLAELA----RLEQDIARLEERRRELEERLEELEeELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180
....*....|....*....|...
gi 2214681115 1671 HLTAQVRSLEAQVAHADQQLRDL 1693
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEEL 384
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1404-1695 |
1.96e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.50 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1404 ELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLaeeNRGLGERANLGRQFLEVELDQARE---------KYVQ 1474
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSAL---NRLLPRLNLLADETLADRVEEIREqldeaeeakRFVQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1475 ELAAVRTDAETHLAEMRQEAQstsrELEVMTAKYEGAkvkvleerqrfQEERQKLTAQVEQL-EVFQREQTKQVEELSKK 1553
Cdd:PRK04863 915 QHGNALAQLEPIVSVLQSDPE----QFEQLKQDYQQA-----------QQTQRDAKQQAFALtEVVQRRAHFSYEDAAEM 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1554 LTEHDQASKVQQQKLKAFQAQRgesqqevQRLQTQLNELQAQLSQKEQAaehyklqMEKAKTHYDAKKQQNQKLQEQLQD 1633
Cdd:PRK04863 980 LAKNSDLNEKLRQRLEQAEQER-------TRAREQLRQAQAQLAQYNQV-------LASLKSSYDAKRQMLQELKQELQD 1045
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1634 LEELQKENKELRSEAERlgRELQQAglkTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGK 1695
Cdd:PRK04863 1046 LGVPADSGAEERARARR--DELHAR---LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLER 1102
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1387-1613 |
2.19e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1387 AAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEvELD 1466
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA-ELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1467 QAREKYVQELAAVRTDAETHLAEMrQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKltaQVEQLEVFQREQTKQ 1546
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRAL-YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAELAAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1547 VEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKA 1613
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
275-752 |
2.39e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 2.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 275 ELEELRGKNESltvRLHETLKQCQNLKTEKSQMDRKI----SQLSEENG---DLSFKVREFANHLQQLQGAFNDLIEEHS 347
Cdd:pfam01576 72 ELEEILHELES---RLEEEEERSQQLQNEKKKMQQHIqdleEQLDEEEAarqKLQLEKVTTEAKIKKLEEDILLLEDQNS 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 348 KASQEWAEKQARLeNELSTALQDKkclEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDN 427
Cdd:pfam01576 149 KLSKERKLLEERI-SEFTSNLAEE---EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 428 TQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGA-------------QL 494
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKaekqrrdlgeeleAL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 495 TAQLTSMTGLNATLQ----QRDQELASLK----EQAKKEQAQMLQTMQEQEQAAQGLRQQVEQlsssLKLKEQQLEEAAK 566
Cdd:pfam01576 305 KTELEDTLDTTAAQQelrsKREQEVTELKkaleEETRSHEAQLQEMRQKHTQALEELTEQLEQ----AKRNKANLEKAKQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 567 EQEATRQDHAQQLAIVAEAREASLRERDTARQQL----------ETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQ 636
Cdd:pfam01576 381 ALESENAELQAELRTLQQAKQDSEHKRKKLEGQLqelqarlsesERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 637 QEKAELSQKIGELHACIEASHQEQRQVQARVTELEA-------QLKAEQQKTTEREKVVQE-KAQLQEQLRALEESLKIT 708
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDernslqeQLEEEEEAKRNVERQLSTlQAQLSDMKKKLEEDAGTL 540
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2214681115 709 KGsLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:pfam01576 541 EA-LEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELD 583
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
343-1090 |
2.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 343 IEEHSKASQEWAEKQARLENELSTALQDKKCL-EEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAA 421
Cdd:pfam02463 158 IEEEAAGSRLKRKKKEALKKLIEETENLAELIiDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 422 KLATDNTQLQTRVETLECERGKQEAQllAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQasqaQGAQLTAQLTSM 501
Cdd:pfam02463 238 RIDLLQELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK----SELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 502 TGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEaakEQEATRQDHAQQLAI 581
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEE---ELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 582 VAEAREASLRERDTARQQLETvEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQR 661
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQL-LLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 662 QvQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLM 741
Cdd:pfam02463 468 K-KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 742 EQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEAtasQHRAESECERLIREVESRQKRFEARQQEEARY 821
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL---KSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 822 GAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNK 901
Cdd:pfam02463 624 VVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKK 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 902 EVACLKTLVLKAGEQQETASLELLKEPPRAANRASDQLGEQQGRPFS-STHAAVKAMEREAEQMGGELERLRAALIKSQG 980
Cdd:pfam02463 704 KEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKEKELAEEREKT 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 981 QQQEERGQQEREVARLTQERGQAQADLaQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQE 1060
Cdd:pfam02463 784 EKLKVEEEKEEKLKAQEEELRALEEEL-KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
730 740 750
....*....|....*....|....*....|
gi 2214681115 1061 AAQRTELKELQQTLEQLKIQLVKKEKEHPA 1090
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKE 892
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
491-722 |
3.54e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 491 GAQLTAQLTSMTGLNATLQQRDQELASLK---EQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKE 567
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 568 QEATRQDHAQQLAIVAEAREASLRERDTARQQLeTVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIG 647
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 648 ELHACIEASHQEQRQVQARvteLEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADA 722
Cdd:COG4942 171 AERAELEALLAELEEERAA---LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
620-1169 |
4.31e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 4.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 620 AANDARDNAQTSVTQAQQEKAELSQKigELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLR 699
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 700 ALEES---LKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEE------ 770
Cdd:PRK02224 255 TLEAEiedLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDrleecr 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 771 ----AHQAETEALRH---------------------ELAEATASQHRAESECERLIREVESRQKRFE---ARQQEEARYG 822
Cdd:PRK02224 335 vaaqAHNEEAESLREdaddleeraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRERFGdapVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 823 AMFQEQLMALKGE--------KTGQEVQEEAVEIHSEGQ-PGQQQSQLAQLHASlakaiqQVQEKEVRAQKLVDDLSALQ 893
Cdd:PRK02224 415 EELREERDELREReaeleatlRTARERVEEAEALLEAGKcPECGQPVEGSPHVE------TIEEDRERVEELEAELEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 894 EKMAATNKEVACLKTLVlkageqqetaslELLKEPPRAANRASD--QLGEQQgrpfsstHAAVKAMEREAEQMGGELERL 971
Cdd:PRK02224 489 EEVEEVEERLERAEDLV------------EAEDRIERLEERREDleELIAER-------RETIEEKRERAEELRERAAEL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 972 RAAliksqgqqqeergqqerevARLTQERGQAQADLAQEKAAK-AELEMRLQnTLNEQRVEFAALQEALAhALTEKEGTD 1050
Cdd:PRK02224 550 EAE-------------------AEEKREAAAEAEEEAEEAREEvAELNSKLA-ELKERIESLERIRTLLA-AIADAEDEI 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1051 QELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQ 1130
Cdd:PRK02224 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688
|
570 580 590
....*....|....*....|....*....|....*....
gi 2214681115 1131 QCQQQQqqveglthSLKSERACRAEQDKALETLQGQLEE 1169
Cdd:PRK02224 689 ELEELE--------ELRERREALENRVEALEALYDEAEE 719
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
584-1314 |
4.53e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 584 EAREASLRE------RDTARQQLETVEKEKDAKLESLQQQLQAAndarDNAQTSVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:PRK03918 145 ESREKVVRQilglddYENAYKNLGEVIKEIKRRIERLEKFIKRT----ENIEELIKEKEKELEEVLREINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLE--EEKRRAADALKEQQCRATEMEA 735
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 736 ESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQAETEALRHElaeatasqhraESECERLIREVESRQKRFEARQ 815
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-EERLEELKKK-----------LKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 816 QEearygamfQEQLMALKGEKTGQEVQeeaveihsegqpgqqqsqlaqlhaslaKAIQQVQEKEVRAQKLVDDLSALQEK 895
Cdd:PRK03918 369 AK--------KEELERLKKRLTGLTPE---------------------------KLEKELEELEKAKEEIEEEISKITAR 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 896 MAATNKEVACLKTLVLKageqqetasLELLKEPPRAANRASDQlgEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAAL 975
Cdd:PRK03918 414 IGELKKEIKELKKAIEE---------LKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 976 IKSQGQQQEERgqqerevaRLTQERGQAQadlaQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAK 1055
Cdd:PRK03918 483 RELEKVLKKES--------ELIKLKELAE----QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1056 LRGQEaaqrTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDasgpgtqsetagktdapgpelqALRAEISKLEQQCQQQ 1135
Cdd:PRK03918 551 LEELK----KKLAELEKKLDELEEELAELLKELEELGFESVE----------------------ELEERLKELEPFYNEY 604
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1136 QqqveglthSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAqdhskAEEEWKaqvaRGQQE 1215
Cdd:PRK03918 605 L--------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY-----SEEEYE----ELREE 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1216 AERKSSLISSLEEEVSILNRQVLEKEGESKELKRlvvaESEKSQKLEERLRLLQvetasnsaRAAERSSALREEVQSLRE 1295
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKE----ELEEREKAKKELEKLE--------KALERVEELREKVKKYKA 735
|
730
....*....|....*....
gi 2214681115 1296 EVEKQrvvSENSRQELASQ 1314
Cdd:PRK03918 736 LLKER---ALSKVGEIASE 751
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1243-1684 |
4.92e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 4.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1243 ESKELKRLVVAESEKSQKLEERLRLLQvETASNSARAAERSSALREEVQSLREEVEKQRVVSENS--RQELASQAERAEE 1320
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEalEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1321 LGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQR 1400
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1401 ELGELGSLRQKIVEQERAaQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVR 1480
Cdd:COG4717 228 ELEQLENELEAAALEERL-KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1481 TDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEER-QRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQ 1559
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRiEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1560 AskvqqqklkafqAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAkthydakkQQNQKLQEQLQDLEELQK 1639
Cdd:COG4717 387 L------------RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--------ELEEELEELEEELEELEE 446
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2214681115 1640 ENKELRSEAERLGRELQQAGLKTK--EAEQTCRHLTAQVRSLEAQVA 1684
Cdd:COG4717 447 ELEELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWA 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1155-1655 |
5.09e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1155 EQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAErksslISSLEEEVSILN 1234
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAE-----LAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1235 RQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQ 1314
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1315 AERAEELGQELKAWQEKFFQKEQA-LSALQLEHTSTQALVSELLPAkhlcqqlqaeqaaaekrfreeleqskqAAGGLQA 1393
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAaLLALLGLGGSLLSLILTIAGV---------------------------LFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1394 ELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYV 1473
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1474 QELaavrtdaETHLAEMRQEAQSTSRElevmtakyegakvkVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKK 1553
Cdd:COG4717 366 EEL-------EQEIAALLAEAGVEDEE--------------ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEA 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1554 LTEHDQASKVQQ--QKLKAFQAQRGESQQEVQRLQTQLNELQAQ--LSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQE 1629
Cdd:COG4717 425 LDEEELEEELEEleEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
490 500
....*....|....*....|....*.
gi 2214681115 1630 QLQDLEELQKEnkELRSEAERLGREL 1655
Cdd:COG4717 505 AREEYREERLP--PVLERASEYFSRL 528
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
993-1537 |
5.32e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 993 VARLTQERGQAQADLAQEKAAKAELEmrLQNTLNEQRVEFAALQEALAHALTEKE---GTDQELAKLRGQEAAQRTELKE 1069
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKD--LHERLNGLESELAELDEEIERYEEQREqarETRDEADEVLEEHEERREELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1070 LQQTLEQL--KIQLVKKEKEHPAGGASGEDASGPGTQSE---TAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGL-- 1142
Cdd:PRK02224 256 LEAEIEDLreTIAETEREREELAEEVRDLRERLEELEEErddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrv 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1143 ---THSLKSERAcrAEQDKALETLQGQLEEKARELGhnqAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERK 1219
Cdd:PRK02224 336 aaqAHNEEAESL--REDADDLEERAEELREEAAELE---SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1220 SSLISSLEEEVSILNRQVLEKEGESKELKRLVvaesEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEK 1299
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARERV----EEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1300 QRVvsenSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHlcqqlqaeqaAAEKRFRE 1379
Cdd:PRK02224 487 LEE----EVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR----------ERAAELEA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1380 ELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLR---AEKASYAEQLSMLKKAHGLLAEENR----GLGE 1452
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRtllAAIADAEDEIERLREKREALAELNDerreRLAE 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1453 RANLGRQfLEVELDQARekyVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKvLEERQRFQEERQKLTAQ 1532
Cdd:PRK02224 632 KRERKRE-LEAEFDEAR---IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE-LEELEELRERREALENR 706
|
....*
gi 2214681115 1533 VEQLE 1537
Cdd:PRK02224 707 VEALE 711
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
407-640 |
5.68e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.64 E-value: 5.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 407 LGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSR-----FEDEKQQLASLIADLQSSvsnLSQAKE 481
Cdd:COG3206 157 LAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQ---LAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 482 ELEQAsQAQGAQLTAQLTSMTGLNATLQQrDQELASLKEQ---AKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKlke 558
Cdd:COG3206 234 ELAEA-EARLAALRAQLGSGPDALPELLQ-SPVIQQLRAQlaeLEAELAELSARYTPNHPDVIALRAQIAALRAQLQ--- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 559 QQLEEAAKEQEATRQdhaqqlaiVAEAREASLRER-DTARQQLETVeKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQ 637
Cdd:COG3206 309 QEAQRILASLEAELE--------ALQAREASLQAQlAQLEARLAEL-PELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
...
gi 2214681115 638 EKA 640
Cdd:COG3206 380 AEA 382
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
305-567 |
6.88e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.25 E-value: 6.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 305 SQMDR----KISQLSEENGDLSFKVrefaNHLQQLQGAFNDLIEEHSKAS-QEWAEKQARLENELSTALQDKKCLEEKNE 379
Cdd:PHA02562 166 SEMDKlnkdKIRELNQQIQTLDMKI----DHIQQQIKTYNKNIEEQRKKNgENIARKQNKYDELVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 380 ILQGKLSQLEDQATRLQEspapekgevlgdalqldtLKQEAAKLATDNTQLQTRVETLE----CERGKQeaQLLAERSRF 455
Cdd:PHA02562 242 ELLNLVMDIEDPSAALNK------------------LNTAAAKIKSKIEQFQKVIKMYEkggvCPTCTQ--QISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQlaslIADLQSSVSNLSQAKEELEQasqaQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMlqtmqE 535
Cdd:PHA02562 302 TKIKDK----LKELQHSLEKLDTAIDELEE----IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI-----E 368
|
250 260 270
....*....|....*....|....*....|...
gi 2214681115 536 QEQAAQGLR-QQVEQLSSSLKLKEQQLEEAAKE 567
Cdd:PHA02562 369 ELQAEFVDNaEELAKLQDELDKIVKTKSELVKE 401
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
218-1087 |
7.42e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 7.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 218 KKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQC 297
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 298 QNLKTEKSQ--------MDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQ 369
Cdd:pfam02463 260 IEKEEEKLAqvlkenkeEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 370 DKKCLEEKnEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQtrvetlecERGKQEAQLL 449
Cdd:pfam02463 340 LEKELKEL-EIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK--------SEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 450 AERSrfedekQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQM 529
Cdd:pfam02463 411 LELA------RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 530 LQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA 609
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 610 KLeslqqqLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ 689
Cdd:pfam02463 565 KL------VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 690 EKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 770 EahqAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEaveih 849
Cdd:pfam02463 719 A---EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE----- 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 850 segqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQETASLELLKEpp 929
Cdd:pfam02463 791 ------EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE-- 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 930 raaNRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQ 1009
Cdd:pfam02463 863 ---ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1010 EKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKE 1087
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
533-775 |
7.52e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.25 E-value: 7.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 533 MQEQEQAAQGLRQQVEQLssslklkEQQLEEAAKEQEATRQDHAqqlaIVAeareaslrerdtarqqLETVEKEKDAKLE 612
Cdd:COG3206 170 REEARKALEFLEEQLPEL-------RKELEEAEAALEEFRQKNG----LVD----------------LSEEAKLLLQQLS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 613 SLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacieASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQeka 692
Cdd:COG3206 223 ELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVI--- 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 693 QLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLME---QREREQKELEQE-KAGRKGLEARIQQL 768
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREvEVARELYESLLQRL 374
|
....*..
gi 2214681115 769 EEAHQAE 775
Cdd:COG3206 375 EEARLAE 381
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
253-649 |
8.79e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 8.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 253 QQRIDHLALLNEKQAASSQEPSELEELRGKNESLtVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHL 332
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 333 QQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQ-ESPAPEKGEVLGDAL 411
Cdd:COG4717 170 AELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEnELEAAALEERLKEAR 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4717 250 LLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 AQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLrQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4717 330 LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV-EDEEELRAALEQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTS--VTQAQQEKAELSQKIGEL 649
Cdd:COG4717 409 EQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELREL 488
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
444-906 |
9.97e-07 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 54.42 E-value: 9.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 444 QEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtglnATLQQRDQELASLKEQAK 523
Cdd:PRK10246 217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQAL--------AAEEKAQPQLAALSLAQP 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 524 KEQAQML-QTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEE-------AAKEQEATRQDHAQQLAIVAEAR--------- 586
Cdd:PRK10246 289 ARQLRPHwERIQEQSAALAHTRQQIEEVNTRLQSTMALRARirhhaakQSAELQAQQQSLNTWLAEHDRFRqwnnelagw 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 587 EASLRERDTARQQLETVEkekdAKLESLQQQLQAAND------ARDNAQTSVTQAQQEKaeLSQKIGELHACIEASHQEQ 660
Cdd:PRK10246 369 RAQFSQQTSDREQLRQWQ----QQLTHAEQKLNALPAitltltADEVAAALAQHAEQRP--LRQRLVALHGQIVPQQKRL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 661 RQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKgSLEEEKRRAADALKEQQCRATEMEAESrsl 740
Cdd:PRK10246 443 AQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIK-DLEAQRAQLQAGQPCPLCGSTSHPAVE--- 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 741 meqrEREQKELEQEKAGRKGLEARIQQLEEahqaETEALRHELAEATASQHRAESECERLIREvesRQKRFEARQQEEAR 820
Cdd:PRK10246 519 ----AYQALEPGVNQSRLDALEKEVKKLGE----EGAALRGQLDALTKQLQRDESEAQSLRQE---EQALTQQWQAVCAS 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 821 YGAMFQEQlMALKGEKTGQEVQEEAVEihsegQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATN 900
Cdd:PRK10246 588 LNITLQPQ-DDIQPWLDAQEEHERQLR-----LLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQED 661
|
....*.
gi 2214681115 901 KEVACL 906
Cdd:PRK10246 662 EEASWL 667
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
412-712 |
1.03e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLEC--ERGKQEAQLLAERSRFEDEKQQLASLIADLQS-SVSNLSQAKEELEQASQ 488
Cdd:PRK11281 44 QLDALNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLSTLSL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 489 AQ-GAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQM---LQTMQEQEQAAQGLRQQVEQLSSSLKLK---EQQL 561
Cdd:PRK11281 124 RQlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALRPSQRVLlqaEQAL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 562 EEAAKEQEATRQDHAQQLAIVAEAReaslRERDTARQQLetvekekdakLESLQQQLQAANDARDNAQTSVTQAQQEKAE 641
Cdd:PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQ----RDYLTARIQR----------LEHQLQLLQEAINSKRLTLSEKTVQEAQSQD 269
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 642 LSQKIGE---LHACIEASHQ-EQRQVQArvTELEAQLKAEQQKTtereKVVQEKAQlQEQlRALEESLKITKGSL 712
Cdd:PRK11281 270 EAARIQAnplVAQELEINLQlSQRLLKA--TEKLNTLTQQNLRV----KNWLDRLT-QSE-RNIKEQISVLKGSL 336
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
294-882 |
1.13e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 294 LKQCQNLKTEKSQMDRKISQLSEENGDLsfkvrefaNHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQD--- 370
Cdd:TIGR00606 500 KKEVKSLQNEKADLDRKLRKLDQEMEQL--------NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpn 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 371 KKCLEEKNEILQGKLSQLEDQATRLQESPAPekgevlGDALQLDTLKQEAAKLATDNTQLQTRVETLECErgKQEAQLLA 450
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDRLAKLNKELAS------LEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ--DEESDLER 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 451 ERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQA---------SQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQ 521
Cdd:TIGR00606 644 LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 522 AKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAtrqdhaQQLAIVAEAREASLRERD-TARQQL 600
Cdd:TIGR00606 724 RRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET------LLGTIMPEEESAKVCLTDvTIMERF 797
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 601 ETVEKEKDAKLESLQQQLQAANDARdnAQTSVTQAQQEKAE----LSQKIGELHACIEASHQEQRQVQARVTELEAQLKA 676
Cdd:TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDR--TVQQVNQEKQEKQHeldtVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 677 EQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKA 756
Cdd:TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 757 GRKGLEARIQQLEEAHQAETEalrHELAEATASQHRAESECERLIREVESRQKRFEARQQEEarygAMFQEQLMALKGEK 836
Cdd:TIGR00606 956 YMKDIENKIQDGKDDYLKQKE---TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE----RWLQDNLTLRKREN 1028
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2214681115 837 TGQEVQEEAVEihSEGQPGQQQ-SQLAQLHASLAKAIQQVQEKEVRA 882
Cdd:TIGR00606 1029 ELKEVEEELKQ--HLKEMGQMQvLQMKQEHQKLEENIDLIKRNHVLA 1073
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1452-1658 |
1.20e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1452 ERANLGRQFLEVELDQAREKYVQ-ELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLT 1530
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEaEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1531 AQVEQLEVFQreQTKQVEELSKKLTEhdqaskvQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAehyklqM 1610
Cdd:COG3206 251 SGPDALPELL--QSPVIQQLRAQLAE-------LEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI------L 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2214681115 1611 EKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQA 1658
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1281-1683 |
1.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1281 ERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELkawqekffqkEQALSALQLEHTSTQALvsellpak 1360
Cdd:PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER----------DDLLAEAGLDDADAEAV-------- 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1361 hlcQQLQAEQAAAEKRFREELEQSKQAAGGLQAElmrAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAH 1440
Cdd:PRK02224 313 ---EARREELEDRDEELRDRLEECRVAAQAHNEE---AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1441 GLLAEENRGLGERANlgrqFLEVELDQArEKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAK-------- 1512
Cdd:PRK02224 387 EELEEEIEELRERFG----DAPVDLGNA-EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpv 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1513 -----VKVLEERQrfqEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQ-----KLKAFQAQRGESQQE- 1581
Cdd:PRK02224 462 egsphVETIEEDR---ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERredleELIAERRETIEEKREr 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1582 VQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTH---YDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQA 1658
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaeLNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618
|
410 420
....*....|....*....|....*
gi 2214681115 1659 GLKTKEAEQTCRHLTAQVRSLEAQV 1683
Cdd:PRK02224 619 AELNDERRERLAEKRERKRELEAEF 643
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1117-1651 |
1.43e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEqdkaLETLQGQLEEKarelghnQAASASAQRELQALRAKAQ 1196
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREE----LETLEAEIEDL-------RETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQvlekegeskelkrlvvaESEKSQKLEERlRLLQVETASNS 1276
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR-----------------DEELRDRLEEC-RVAAQAHNEEA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1277 ARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEL 1356
Cdd:PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1357 LPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGElgsLRQKIVEQERAAQQLRAEKASYAEQLSML 1436
Cdd:PRK02224 425 REREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE---DRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1437 KKAHGLLAEENRgLGERanlgRQFLEVELDQAREKyvqelAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVL 1516
Cdd:PRK02224 502 EDLVEAEDRIER-LEER----REDLEELIAERRET-----IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1517 EERQRFQEERQKLTAQVEQLEvfqreqtkQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQA-- 1594
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLE--------RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAef 643
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1595 ------QLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQK----LQEQLQDLEELQKENKELRSEAERL 1651
Cdd:PRK02224 644 dearieEAREDKERAEEYLEQVEEKLDELREERDDLQAeigaVENELEELEELRERREALENRVEAL 710
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1211-1659 |
1.68e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1211 RGQQEAERKSSLISSLEEEVSILNRQVLEKEGE----SKELKRLVVAESEKSQKLE---ERLRLLQvetasNSARAAERS 1283
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRlvemARELEELSARESDLEQDYQaasDHLNLVQ-----TALRQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1284 SALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLC 1363
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1364 qqlqaeqaaaekrfrEELEQSKQAAGGLQAELMRAQRELGE-LGSLRQKIVEQERAAQQlraekasYAEQLSMLKKAHGl 1442
Cdd:COG3096 430 ---------------GLPDLTPENAEDYLAAFRAKEQQATEeVLELEQKLSVADAARRQ-------FEKAYELVCKIAG- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1443 laeenrglgeranlgrqflEVELDQAREKYVQELAAVRTDAetHLAEMRQEAQSTSRELEvmtakyegakvkvleerQRF 1522
Cdd:COG3096 487 -------------------EVERSQAWQTARELLRRYRSQQ--ALAQRLQQLRAQLAELE-----------------QRL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1523 qEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQA 1602
Cdd:COG3096 529 -RQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAA 607
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1603 AEHY-KLQMEKAKTHYDAKKQQNQkLQEQLQDLEELQKENKELRSEAERLG---RELQQAG 1659
Cdd:COG3096 608 QDALeRLREQSGEALADSQEVTAA-MQQLLEREREATVERDELAARKQALEsqiERLSQPG 667
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
206-777 |
1.73e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 206 ILQTPQFQMRRLKKQLADERSNRDDLELELSESLKLLTekdaqiamMQQRIDHLALLNEKQAA----SSQEPSELEELRG 281
Cdd:TIGR00618 312 IHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT--------LHSQEIHIRDAHEVATSireiSCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 282 KNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVRefANHLQQLQGAFNDLIEEHSKASQEWAEKQARLE 361
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH--AKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 362 NELSTALQDKKCLEEKNEILQGKLSQL----EDQATRLQESPAPEKGEVLGDALQLdTLKQEAAKLATDNTQLQTRVETL 437
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKkavvLARLLELQEEPCPLCGSCIHPNPAR-QDIDNPGPLTRRMQRGEQTYAQL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 438 ECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASqaqgaQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:TIGR00618 541 ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ-----NITVRLQDLTEKLSEAEDMLACEQH 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSS-SLKLKEQQLEEAAKeqeATRQDHAQQLAIvaeaREASLRERDTA 596
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAlQLTLTQERVREHAL---SIRVLPKELLAS----RQLALQKMQSE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 597 RQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACI-EASHQEQRQVQARVTELEA--- 672
Cdd:TIGR00618 689 KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLkELMHQARTVLKARTEAHFNnne 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 673 QLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELE 752
Cdd:TIGR00618 769 EVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
570 580
....*....|....*....|....*
gi 2214681115 753 QEKagrKGLEARIQQLEEAHQAETE 777
Cdd:TIGR00618 849 HQL---LKYEECSKQLAQLTQEQAK 870
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
405-1081 |
2.34e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 405 EVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAE----------RSRFEDEKQQLASLIADLQSSVS 474
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAEtelcaeaeemRARLAARKQELEEILHELESRLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 475 NLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLqTMQEQEQAAQGLRQQVEQLSSSL 554
Cdd:pfam01576 86 EEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIL-LLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 555 KLKEQQLEEAAKEQEATRQDHAQQLAIVaearEASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQ 634
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDL----EERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 635 AQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQEQLRA----LEESLKITKG 710
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERA---ARNKAEKQRRDLGEELEAlkteLEDTLDTTAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 711 SLEEEKRRAADALKEQQCRATEMEAESRSLMEQRERE-------QKELEQEKAGRKGLEARIQQLEEAhqaetealRHEL 783
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelTEQLEQAKRNKANLEKAKQALESE--------NAEL 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 784 AEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGE---KTGQEVQEEAVEIHSEGQPGQQQSQ 860
Cdd:pfam01576 390 QAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSElesVSSLLNEAEGKNIKLSKDVSSLESQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 861 LAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKM-------AATNKEVACLKTLV--LKAGEQQETASLELLKEPPRA 931
Cdd:pfam01576 470 LQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLeeeeeakRNVERQLSTLQAQLsdMKKKLEEDAGTLEALEEGKKR 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 932 ANRASDQLGEQqgrpFSSTHAAVKAMEREAEQMGGELE----------RLRAALIKSQGQQQEERGQQEREVARLTQERG 1001
Cdd:pfam01576 550 LQRELEALTQQ----LEEKAAAYDKLEKTKNRLQQELDdllvdldhqrQLVSNLEKKQKKFDQMLAEEKAISARYAEERD 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1002 QAQADlAQEKAAKAELEMRLQNTLNEQRVEF----AALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQL 1077
Cdd:pfam01576 626 RAEAE-AREKETRALSLARALEEALEAKEELertnKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704
|
....
gi 2214681115 1078 KIQL 1081
Cdd:pfam01576 705 EDEL 708
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1140-1672 |
3.31e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1140 EGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARgQQEAERK 1219
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR-IEELRAQ 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1220 SSLISSLEEEVSiLNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEK 1299
Cdd:TIGR00618 276 EAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1300 QRVVSENSRQEL-ASQAERAEELGQELKAWQEK---FFQKEQALSALQLEHTSTQALVSEL----------LPAKHLCQQ 1365
Cdd:TIGR00618 355 IHIRDAHEVATSiREISCQQHTLTQHIHTLQQQkttLTQKLQSLCKELDILQREQATIDTRtsafrdlqgqLAHAKKQQE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1366 LQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKAS-YAEQLSMLKKAHGLLA 1444
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLeLQEEPCPLCGSCIHPN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1445 EENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAET-HLAEMRQEAQSTSRELEVMTAKYEGAKV---KVLEERQ 1520
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERkQRASLKEQMQEIQQSFSILTQCDNRSKEdipNLQNITV 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1521 RFQEERQKLTAQVEQLEVFQREQTKQVEE---LSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLS 1597
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPeqdLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL 674
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1598 QKEQAAEHYKLQMEKAKTHYDAK--KQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHL 1672
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ 751
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
653-1690 |
3.62e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 653 IEASHQEQRQVQARVTELEAQLKAEQQKTTErekVVQEKAQLQEQLRALEESLKitkgslEEEKRRAADALKEQQCRATE 732
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQ---LCEEKNALQEQLQAETELCA------EAEEMRARLAARKQELEEIL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 733 MEAESRslMEQREREQKELEQEKagrKGLEARIQQLEEaHQAETEALRHELaeatasqHRAESECERLIREVESRQKRFE 812
Cdd:pfam01576 78 HELESR--LEEEEERSQQLQNEK---KKMQQHIQDLEE-QLDEEEAARQKL-------QLEKVTTEAKIKKLEEDILLLE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 813 ARQQEEARYGAMFQEQLmalkGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:pfam01576 145 DQNSKLSKERKLLEERI----SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 893 QEKMAATNKEVACLKTLVLKAGEQQETASLELLKEPPRAANRASdqlgeqqgrpfssthaAVKAMEREAEQMGGELERLR 972
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALK----------------KIRELEAQISELQEDLESER 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 973 AALIKSQgqqqeergqqerevarltqergQAQADLAQE-KAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQ 1051
Cdd:pfam01576 285 AARNKAE----------------------KQRRDLGEElEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1052 ELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGpgtqsetagktdapgpELQALRAEISKLEQQ 1131
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA----------------ELRTLQQAKQDSEHK 406
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1132 CQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQD-HSKAEEEWKAQVA 1210
Cdd:pfam01576 407 RKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDtQELLQEETRQKLN 486
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1211 ---RGQQEAERKSSLISSLEEEVSI---LNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSS 1284
Cdd:pfam01576 487 lstRLRQLEDERNSLQEQLEEEEEAkrnVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1285 A---LREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQ---ELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP 1358
Cdd:pfam01576 567 AydkLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaEEKAISARYAEERDRAEAEAREKETRALSLARALE 646
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1359 AKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQREL-GELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLK 1437
Cdd:pfam01576 647 EALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALeQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALK 726
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1438 KAH--GLLAEENRGLGERANLGRQF--LEVELDQAREKYVQELAAvRTDAETHLAEMRQEAQSTSRelevmtakyegAKV 1513
Cdd:pfam01576 727 AQFerDLQARDEQGEEKRRQLVKQVreLEAELEDERKQRAQAVAA-KKKLELDLKELEAQIDAANK-----------GRE 794
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1514 KVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLN--- 1590
Cdd:pfam01576 795 EAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIAsga 874
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1591 -----------ELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQqag 1659
Cdd:pfam01576 875 sgksalqdekrRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELK--- 951
|
1050 1060 1070
....*....|....*....|....*....|..
gi 2214681115 1660 LKTKEAEQTCR-HLTAQVRSLEAQVAHADQQL 1690
Cdd:pfam01576 952 AKLQEMEGTVKsKFKSSIAALEAKIAQLEEQL 983
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1526-1693 |
4.32e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 4.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1526 RQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEH 1605
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1606 YKL--QMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTK-EAEQTCRHLTAQVRSLEAQ 1682
Cdd:COG4717 128 LPLyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQR 207
|
170
....*....|.
gi 2214681115 1683 VAHADQQLRDL 1693
Cdd:COG4717 208 LAELEEELEEA 218
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
504-898 |
5.38e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 5.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHaQQLAIVA 583
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-EKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 584 EAREAsLRERDTARQQLETVE------KEKDAKLESLQQQLQAANDARDNAQTSVTQA-QQEKAELSQKIGELHACIEAS 656
Cdd:COG4717 126 QLLPL-YQELEALEAELAELPerleelEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 657 HQEQRQVQARVTELEAQLKAEQQKTTEREKvVQEKAQLQEQLRALEESLKI---------TKGSLEEEKRRAADALKEQQ 727
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLEN-ELEAAALEERLKEARLLLLIaaallallgLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 728 CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAE------------ATASQHRAES 795
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLElldrieelqellREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 796 ECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKtgQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQV 875
Cdd:COG4717 364 QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEEL--EELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420
....*....|....*....|...
gi 2214681115 876 QEKEVRAQKLVDDLSALQEKMAA 898
Cdd:COG4717 442 EELEEELEELREELAELEAELEQ 464
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1183-1711 |
6.04e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1183 SAQRELQALRAKAQDHSKAEEEWKAQVARGQQEaerKSSLISSLEEEVsilNRQVLEKEGESKELKRLVVAESEKSQKLE 1262
Cdd:pfam12128 255 SAELRLSHLHFGYKSDETLIASRQEERQETSAE---LNQLLRTLDDQW---KEKRDELNGELSAADAAVAKDRSELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1263 ERLRLLQVETASNSARAAERSSALREEVQSLREEVE-----KQRVVSENSRQELASQAERAEELgQELKAWQEKffQKEQ 1337
Cdd:pfam12128 329 DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKaltgkHQDVTAKYNRRRSKIKEQNNRDI-AGIKDKLAK--IREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1338 ALSALQLEHTSTQALVSELlpakhlcqqlQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQER 1417
Cdd:pfam12128 406 RDRQLAVAEDDLQALESEL----------REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1418 AAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGeRANLGRQFLEVELDQAREKYVQE----LAAVRTDA---ETHLAEM 1490
Cdd:pfam12128 476 AREEQEAANAEVERLQSELRQARKRRDQASEALR-QASRRLEERQSALDELELQLFPQagtlLHFLRKEApdwEQSIGKV 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1491 RQEAQ-------------STSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEH 1557
Cdd:pfam12128 555 ISPELlhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1558 DQASKVQQQKLKAFQAQRgesqqevQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAkkQQNQKLQEQLQDLEEL 1637
Cdd:pfam12128 635 EKASREETFARTALKNAR-------LDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEA--QLKQLDKKHQAWLEEQ 705
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1638 QKENKELRSEAERLGRELQQAgLKTKEAEQTCRHLTAQVrSLEAQVAHADQQL-RDLGKFQVATDALKSREPQVK 1711
Cdd:pfam12128 706 KEQKREARTEKQAYWQVVEGA-LDAQLALLKAAIAARRS-GAKAELKALETWYkRDLASLGVDPDVIAKLKREIR 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
628-845 |
6.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 628 AQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKI 707
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE---QELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 708 TKGSLEEEKRRAADALKEQQ--------------CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAhQ 773
Cdd:COG4942 95 LRAELEAQKEELAELLRALYrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-R 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 774 AETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEA 845
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1008-1537 |
7.40e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1008 AQEKAAKAELEMRLQNTLnEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLvkkeke 1087
Cdd:COG4913 260 LAERYAAARERLAELEYL-RAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------ 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1088 hpaggasgedasgpgtqsetagkTDAPGPELQALRAEISKLEQQCQQQQQQveglthslkseracRAEQDKALETLQGQL 1167
Cdd:COG4913 333 -----------------------RGNGGDRLEQLEREIERLERELEERERR--------------RARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1168 EEKARELGHNQAASASAQRELQALRAKAQDhskAEEEWKAQVARGQQEAERKSSLISSLEEEVS------ILNRQVLEKE 1241
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASLERRKSniparlLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1242 -----------GESKELK-------------------RLVVAESEKSQ--------KLEERLRLLQVETASNSARAAE-- 1281
Cdd:COG4913 453 lgldeaelpfvGELIEVRpeeerwrgaiervlggfalTLLVPPEHYAAalrwvnrlHLRGRLVYERVRTGLPDPERPRld 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1282 ----------RSSALREEVQSL----------------------------------------REEVEKQRVVSENSRQEL 1311
Cdd:COG4913 533 pdslagkldfKPHPFRAWLEAElgrrfdyvcvdspeelrrhpraitragqvkgngtrhekddRRRIRSRYVLGFDNRAKL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1312 ASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALvsellpakhlcqqlqaeqaaaekrfrEELEQSKQAAGGL 1391
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRL--------------------------AEYSWDEIDVASA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1392 QAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEEnrglgeranlgRQFLEVELDQAREK 1471
Cdd:COG4913 667 EREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE-----------LEQAEEELDELQDR 735
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 1472 YVQELAAVRTDAETHLAEMRQEAQSTSRELEVmtakyegakvkvleeRQRFQEERQKLTAQVEQLE 1537
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAAALGDAVEREL---------------RENLEERIDALRARLNRAE 786
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
136-717 |
9.54e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 9.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 136 DHEESLNLTEDLESFLEKVPYTHASTLSE--ELSPPSHQTKRKIRFLEiQRIASSSSENNFLSGSPSSpmgdilqtpqfq 213
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREreELAEEVRDLRERLEELE-EERDDLLAEAGLDDADAEA------------ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 214 mrrLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLAllnekqaassqepSELEELRGKNESLTVRLHET 293
Cdd:PRK02224 312 ---VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE-------------ERAEELREEAAELESELEEA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 294 LKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEhskasqewaekqarlENELSTALQDKKC 373
Cdd:PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER---------------EAELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 374 LEEKNEILqgklsqledqatrLQESPAPEKGEVLGDALQLDTL---KQEAAKLATDNTQLQTRVETLE--CERGKQEAQL 448
Cdd:PRK02224 441 RVEEAEAL-------------LEAGKCPECGQPVEGSPHVETIeedRERVEELEAELEDLEEEVEEVEerLERAEDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 449 LAERSRFEDEKQQLASLIADLQssvsnlsqakeeleqasqaqgaqltaqltsmtglnATLQQRDQELASLKEQAKKEQAQ 528
Cdd:PRK02224 508 EDRIERLEERREDLEELIAERR-----------------------------------ETIEEKRERAEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 529 mlqtMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRqDHAQQLAIVAEAREA--SLRERDTARQQLETVEKE 606
Cdd:PRK02224 553 ----AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEieRLREKREALAELNDERRE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 607 KDAKLESLQQQLQAANDArdnaqTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKaEQQKTTEREK 686
Cdd:PRK02224 628 RLAEKRERKRELEAEFDE-----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE-ELEELRERRE 701
|
570 580 590
....*....|....*....|....*....|.
gi 2214681115 687 VVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:PRK02224 702 ALENRVEALEALYDEAEELESMYGDLRAELR 732
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
521-814 |
9.84e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 9.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 521 QAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEA----AKEQEATRQ----DHAQQ--------LAIVAE 584
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlNLVQTALRQqekiERYQEdleelterLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 585 AREASLRERDTARQQLETVEKEKDakleSLQQQLQAANDARDNAQTSVTQAQQEKaelsQKIGELHACIEASHQEQRQVQ 664
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVD----SLKSQLADYQQALDVQQTRAIQYQQAV----QALEKARALCGLPDLTPENAE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 665 ARVTELEAQlkaEQQKTTEREKVVQEKAQLQEQLRALEESLK-ITKGSLEEEKRRAADALKEQQCRATEMEAESRSL--- 740
Cdd:COG3096 441 DYLAAFRAK---EQQATEEVLELEQKLSVADAARRQFEKAYElVCKIAGEVERSQAWQTARELLRRYRSQQALAQRLqql 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 741 ------MEQREREQ-------KELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQhraeSECERLIREVESR 807
Cdd:COG3096 518 raqlaeLEQRLRQQqnaerllEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR----SELRQQLEQLRAR 593
|
....*..
gi 2214681115 808 QKRFEAR 814
Cdd:COG3096 594 IKELAAR 600
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1189-1321 |
1.09e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.63 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1189 QALRaKAQDHSKAEEEWKAQVARGQQEAERkssliSSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLL 1268
Cdd:COG2433 380 EALE-ELIEKELPEEEPEAEREKEHEEREL-----TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1269 QVEtASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELasqaERAEEL 1321
Cdd:COG2433 454 RSE-ERREIRKDREISRLDREIERLERELEEERERIEELKRKL----ERLKEL 501
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
211-764 |
1.15e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.94 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHLA----LLNEKQAASSQEPSELEE-------L 279
Cdd:pfam01576 102 QQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSkerkLLEERISEFTSNLAEEEEkakslskL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 280 RGKNESLTVRLHETLKQC----QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQ----LQGAFNDLIEEHSKASQ 351
Cdd:pfam01576 182 KNKHEAMISDLEERLKKEekgrQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKkeeeLQAALARLEEETAQKNN 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 352 ----------EWAEKQARLENEL---STALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVlgdALQLDTLKQ 418
Cdd:pfam01576 262 alkkireleaQISELQEDLESERaarNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEV---TELKKALEE 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 419 EAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLtaql 498
Cdd:pfam01576 339 ETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQL---- 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 499 tsmtglnatlqqrdQELASLKEQAKKEQaqmlqtmQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATrqdhAQQ 578
Cdd:pfam01576 415 --------------QELQARLSESERQR-------AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----ESQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 579 LAIVAEAREASLRERDTARQQLETVEKEKDakleSLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQ 658
Cdd:pfam01576 470 LQDTQELLQEETRQKLNLSTRLRQLEDERN----SLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEE 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 659 EQRQVQarvTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRAL---EESLKITKGSLEEEKRRAADALKEQQ-CRATEME 734
Cdd:pfam01576 546 GKKRLQ---RELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvdLDHQRQLVSNLEKKQKKFDQMLAEEKaISARYAE 622
|
570 580 590
....*....|....*....|....*....|
gi 2214681115 735 AESRSLMEQREREQKELEQEKAGRKGLEAR 764
Cdd:pfam01576 623 ERDRAEAEAREKETRALSLARALEEALEAK 652
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
260-907 |
1.16e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 260 ALLNEKQAASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAF 339
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQL 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 340 NDL---IEEHSKASQEWAEKQARLENELSTALQdkkCLEEKNEilqgKLSQLEDQATRLQEspapekgEVLGDALQLDTL 416
Cdd:pfam01576 527 SDMkkkLEEDAGTLEALEEGKKRLQRELEALTQ---QLEEKAA----AYDKLEKTKNRLQQ-------ELDDLLVDLDHQ 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 417 KQeaakLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTA 496
Cdd:pfam01576 593 RQ----LVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMED 668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 497 QLTSMTGLNATLQqrdqELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHA 576
Cdd:pfam01576 669 LVSSKDDVGKNVH----ELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKR 744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 577 QQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEAS 656
Cdd:pfam01576 745 RQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEI 824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 657 HQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAAD-------ALKEQQCR 729
Cdd:pfam01576 825 LAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEAriaqleeELEEEQSN 904
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 730 ATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQaETEALRHELAEATASQHRA-----ESECERLIREV 804
Cdd:pfam01576 905 TELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNK-ELKAKLQEMEGTVKSKFKSsiaalEAKIAQLEEQL 983
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 805 ESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQK 884
Cdd:pfam01576 984 EQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAE--------KGNSRMKQLKRQLEEAEEEASRANAARRK 1055
|
650 660
....*....|....*....|...
gi 2214681115 885 LVDDLSALQEKMAATNKEVACLK 907
Cdd:pfam01576 1056 LQRELDDATESNESMNREVSTLK 1078
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1278-1694 |
1.17e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1278 RAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELL 1357
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1358 PAKhlcqQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERaaqqLRAEKASYAEQLSMLK 1437
Cdd:PRK03918 242 ELE----KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK----LSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1438 KAHGLLAEENRGLGER-ANLGRQFLEV-ELDQAREKYVQELAAVRTDAETH------LAEMRQ-EAQSTSRELEVMTAKY 1508
Cdd:PRK03918 314 KRLSRLEEEINGIEERiKELEEKEERLeELKKKLKELEKRLEELEERHELYeeakakKEELERlKKRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1509 EGAKvkvlEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSK----------KLTEHDQASKVQQ--QKLKAFQAQRG 1576
Cdd:PRK03918 394 EELE----KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrELTEEHRKELLEEytAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1577 ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQ 1656
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430
....*....|....*....|....*....|....*...
gi 2214681115 1657 qaglKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLG 1694
Cdd:PRK03918 550 ----KLEELKKKLAELEKKLDELEEELAELLKELEELG 583
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1571-1693 |
1.20e-05 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 49.66 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1571 FQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhYKLQMEKAKTHYDAKKQQ---NQKLQEQ----LQDLEELQKENKE 1643
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELGAEAEIAA-AEAQLAAAQAQLDLAQRElerYQALYKKgavsQQELDEARAALDA 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1644 LRSEAERLGRELQQAGLKTKEAEQTcRHLTAQVRSLEAQVAHADQQLRDL 1693
Cdd:COG1566 160 AQAQLEAAQAQLAQAQAGLREEEEL-AAAQAQVAQAEAALAQAELNLART 208
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
503-619 |
1.30e-05 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 48.73 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 503 GLNATLQQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGlRQQVEQLSSSLKLKEQQLEEAAKEQEaTRQDHAQQLAIV 582
Cdd:NF038305 98 HLNNTRRLSTQALQQINQQAGQQETQ-LQQQLNQLQAQTS-PQQLNQLLKSEQKQGQALASGQLPEE-QKEQLQQFKSNP 174
|
90 100 110
....*....|....*....|....*....|....*..
gi 2214681115 583 AEAREASLRERDTARQQLETVEKEkdAKLESLQQQLQ 619
Cdd:NF038305 175 QALDKFLAQQLTQIRTQAEEAEKQ--ARLEALKSSLR 209
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1117-1667 |
1.31e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERL---RLLQVETA 1273
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKeeeLELKSEEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1274 SNSARAAERSSALREEVQSLREEVEKQRVVSENSRQ-ELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQAL 1352
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIElKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1353 VSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGEL--GSLRQKIVEQERAAQQLRAEKASYA 1430
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAveNYKVAISTAVIVEVSATADEVEERQ 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1431 EQLSMLKKAHGLLAEENRGLGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQE-AQSTSRELEVMTAKYE 1509
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGiLKDTELTKLKESAKAK 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1510 GAKVKVLEERQRFQEERQKLTAQVEQLevfQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQL 1589
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSEL---TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1590 NELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQ 1667
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1452-1738 |
1.47e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1452 ERANLGRQFLEVELDQAREKYVQELAAV--RTDAETH--LAEMRQEAQSTSRELEVMTAKYEGAK------VKVLEERQR 1521
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQIeeKEEKDLHerLNGLESELAELDEEIERYEEQREQARetrdeaDEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1522 FQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQ 1601
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1602 AaehyklqMEKAKTHYDAKKQQNQKLQEQLQDLEElqkENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEA 1681
Cdd:PRK02224 329 R-------LEECRVAAQAHNEEAESLREDADDLEE---RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1682 QVAHADQQLRDLGKFQVATDALKSREPQVKPQLDLSIDSLDLSLEEGTPCSVASKLP 1738
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP 455
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
856-1087 |
1.69e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 856 QQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEvaclktlvLKAGEQQETASLELLKEPPRAANRA 935
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR--------IRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 936 SDQLGEQQgrpfssthAAVKAMEREAEQMGgeleRLRAALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKA 1015
Cdd:COG4942 96 RAELEAQK--------EELAELLRALYRLG----RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1016 ELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKE 1087
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
558-756 |
1.75e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 558 EQQLEEAAKEQEATRQDhaqqlaIVAEAREaslrERDTARQQLETVEKEKDAKLESLQQQLqaandardnaqtsvtqaQQ 637
Cdd:PRK12704 41 KRILEEAKKEAEAIKKE------ALLEAKE----EIHKLRNEFEKELRERRNELQKLEKRL-----------------LQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 638 EKAELSQKIGELhacieashqEQRqvQARVTELEAQLKAEQQKTTEREKVVQEKaqLQEQLRALEESLKITKgslEEEKR 717
Cdd:PRK12704 94 KEENLDRKLELL---------EKR--EEELEKKEKELEQKQQELEKKEEELEEL--IEEQLQELERISGLTA---EEAKE 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 2214681115 718 RAADALKEqqcratEMEAESRSLMEQREREQKELEQEKA 756
Cdd:PRK12704 158 ILLEKVEE------EARHEAAVLIKEIEEEAKEEADKKA 190
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1158-1349 |
1.78e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1158 KALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQ--VARGQQEAERKSSLISSLEE---EVSI 1232
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAELERLDAssdDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1233 LNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEvqsLREEVEKQRvvsensRQELA 1312
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE---LRALLEERF------AAALG 760
|
170 180 190
....*....|....*....|....*....|....*....
gi 2214681115 1313 SQAER--AEELGQELKAWQEKFFQKEQALSALQLEHTST 1349
Cdd:COG4913 761 DAVERelRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
385-803 |
1.90e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 385 LSQLEDQATRLQESPApEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLE---------CERGKQEAQLLAERSRF 455
Cdd:COG4717 70 LKELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKLEkllqllplyQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQLASlIADLQSSVSNLSQAKEELEQASQAQGAQLT-AQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQ 534
Cdd:COG4717 149 EELEERLEE-LRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 535 -----EQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDA 609
Cdd:COG4717 228 eleqlENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 610 KLESLQQQLQAA--NDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKV 687
Cdd:COG4717 308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 688 VQeKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQcrATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQ 767
Cdd:COG4717 388 RA-ALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
410 420 430
....*....|....*....|....*....|....*.
gi 2214681115 768 LEEAhqaetealrHELAEATASQHRAESECERLIRE 803
Cdd:COG4717 465 LEED---------GELAELLQELEELKAELRELAEE 491
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
412-816 |
1.93e-05 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 50.18 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASL---------IADLQSSVSNLSQAKEE 482
Cdd:PRK10246 427 RLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVkticeqearIKDLEAQRAQLQAGQPC 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 483 LEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQ---MLQTMQEQEQAAQGLRQQVEQLSS------- 552
Cdd:PRK10246 507 PLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQldaLTKQLQRDESEAQSLRQEEQALTQqwqavca 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 553 SLKLKEQQLEEAAKEQEAtRQDHAQQLAIVAEARE------ASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND--- 623
Cdd:PRK10246 587 SLNITLQPQDDIQPWLDA-QEEHERQLRLLSQRHElqgqiaAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEeas 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 624 ---ARDNAQTSVTQAQQEKAELSQKIGELHACIE--------------ASHQEQRQVQARVTELEAQLKAEQQKTTerek 686
Cdd:PRK10246 666 wlaTRQQEAQSWQQRQNELTALQNRIQQLTPLLEtlpqsddlphseetVALDNWRQVHEQCLSLHSQLQTLQQQDV---- 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 687 vvQEKAQLQEQLRALEESLkitKGSLEEEKRRAADALkeqqcrateMEAESRSLMEQRereQKELEQEKAGRKGLEARIQ 766
Cdd:PRK10246 742 --LEAQRLQKAQAQFDTAL---QASVFDDQQAFLAAL---------LDEETLTQLEQL---KQNLENQRQQAQTLVTQTA 804
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2214681115 767 QLEEAHQAETEALRHELAEATASQHRAESECERLiREVESRQKrfEARQQ 816
Cdd:PRK10246 805 QALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQL-RENTTRQG--EIRQQ 851
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1378-1682 |
2.34e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1378 REELEQSKQAAGGLQAELMRAQRELGELGSlRQKIVEQE-----------RAAQQLRAEKASYAEQLSMLKKAhgllAEE 1446
Cdd:COG3096 291 RRELFGARRQLAEEQYRLVEMARELEELSA-RESDLEQDyqaasdhlnlvQTALRQQEKIERYQEDLEELTER----LEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1447 NRGLGERANLGRQFLEVELDQAREKyVQELAAVRTDAETHLAEMR------QEAQSTSRELEVMTAKYEGAKVKVLEERQ 1520
Cdd:COG3096 366 QEEVVEEAAEQLAEAEARLEAAEEE-VDSLKSQLADYQQALDVQQtraiqyQQAVQALEKARALCGLPDLTPENAEDYLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1521 RFQEERQKLTAQVEQLEV------FQREQTKQVEELSKKL---TEHDQASKVQQQKLKAFQAQRGESQQEVQrLQTQLNE 1591
Cdd:COG3096 445 AFRAKEQQATEEVLELEQklsvadAARRQFEKAYELVCKIageVERSQAWQTARELLRRYRSQQALAQRLQQ-LRAQLAE 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1592 LQAQLSQKEQAAEhyklqmekakthydAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRH 1671
Cdd:COG3096 524 LEQRLRQQQNAER--------------LLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQ 589
|
330
....*....|.
gi 2214681115 1672 LTAQVRSLEAQ 1682
Cdd:COG3096 590 LRARIKELAAR 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
354-570 |
2.41e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 354 AEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTR 433
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 434 VETLECERGKQ--EAQLLAERSRFE-----DEKQQLASLIADLQSSVSNLSQAKEELEQASQ---AQGAQLTAQLTSMTG 503
Cdd:COG4942 99 LEAQKEELAELlrALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAelaALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEA 570
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
412-640 |
2.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLlaerSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI----AALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 AQLTAQLTSMtglnATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG4942 104 EELAELLRAL----YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 572 RQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKA 640
Cdd:COG4942 180 LAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1461-1653 |
2.52e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1461 LEVELDQAREKyVQELAAVRTDAETHlAEMRQEAQSTSRELEVMTAKYEGAKVKVLEER-QRFQEERQKLTAQVEQLEVF 1539
Cdd:COG4913 240 AHEALEDAREQ-IELLEPIRELAERY-AAARERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1540 QREQTKQVEELSKKLTEHDQASKvqqQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQA-AEHYKLQMEKAKTHYD 1618
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRL---EQLEREIERLERELEERERRRARLEALLAALGLPLPAsAEEFAALRAEAAALLE 394
|
170 180 190
....*....|....*....|....*....|....*....
gi 2214681115 1619 AKKQQNQKLQEQL----QDLEELQKENKELRSEAERLGR 1653
Cdd:COG4913 395 ALEEELEALEEALaeaeAALRDLRRELRELEAEIASLER 433
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
630-796 |
2.61e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 49.10 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 630 TSVTQAQQEKAELSQKIGELHacIEASHQEQRQVQA-RVTELEAQLKAEQQKttEREKVVQEKAQLQEQLRAL-EESLKI 707
Cdd:COG2268 195 AEIIRDARIAEAEAERETEIA--IAQANREAEEAELeQEREIETARIAEAEA--ELAKKKAEERREAETARAEaEAAYEI 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 708 TkgslEEEKRRAADALKEQQCRATEMEAEsrslmeQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHE-LAEA 786
Cdd:COG2268 271 A----EANAEREVQRQLEIAEREREIELQ------EKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKgLAEA 340
|
170
....*....|
gi 2214681115 787 TASQHRAESE 796
Cdd:COG2268 341 EGKRALAEAW 350
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1477-1706 |
2.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1477 AAVRTDAETHLAEMRQEAQSTSRELevmtAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTE 1556
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKEL----AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1557 HDQASKVQQQKLKAF--QAQRGE---------SQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQ 1625
Cdd:COG4942 95 LRAELEAQKEELAELlrALYRLGrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1626 KLQEQLQDLEELQKENKELRSEAERLGRELQQaglKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDALKS 1705
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
.
gi 2214681115 1706 R 1706
Cdd:COG4942 252 K 252
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
685-1474 |
2.86e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 685 EKVVQEKAQlqeQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEkagRKGLEAR 764
Cdd:pfam15921 77 ERVLEEYSH---QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 765 IQQLEEAHQAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEarqqEEARYGAMFQEQLMALKGEKTGQEVQEE 844
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEIRSILVDFE----EASGKKIYEHDSMSTMHFRSLGSAISKI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 845 AVEIHSE-----GQPGQQQSQLAQLHASLAKAIQQV-QEKEVRAQKLVDD----LSALQEKMAATNKEVACLKTlvlkag 914
Cdd:pfam15921 226 LRELDTEisylkGRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEheveITGLTEKASSARSQANSIQS------ 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 915 eqqetaSLELLKEPPRAANrasdQLGEQQGRPFSSTHAAVKAMEREAEQM-GGELERLRAALIKSQgqqqeergqqerev 993
Cdd:pfam15921 300 ------QLEIIQEQARNQN----SMYMRQLSDLESTVSQLRSELREAKRMyEDKIEELEKQLVLAN-------------- 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 994 ARLTQERGQaQADLAQEKAAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQT 1073
Cdd:pfam15921 356 SELTEARTE-RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1074 LEQLKIQlVKKEKEHPAGGASGEDASGPGTQSETAgKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACR 1153
Cdd:pfam15921 435 LKAMKSE-CQGQMERQMAAIQGKNESLEKVSSLTA-QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1154 AEQDKALETLQGQLEEKARELGHNQAAS---ASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEV 1230
Cdd:pfam15921 513 EATNAEITKLRSRVDLKLQELQHLKNEGdhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1231 SILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREevqsLREEVEKQRVVSENSRQE 1310
Cdd:pfam15921 593 AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD----IKQERDQLLNEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1311 LASQAERAEELGQELKAWQEKFfqkEQALSALQLEHTSTQalvSELlpakhlcqqlqAEQAAAEKRFREELEQSKQAAGG 1390
Cdd:pfam15921 669 LNSLSEDYEVLKRNFRNKSEEM---ETTTNKLKMQLKSAQ---SEL-----------EQTRNTLKSMEGSDGHAMKVAMG 731
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1391 LQAELMrAQRelGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLA-EENRGLGERANLGRQ---------F 1460
Cdd:pfam15921 732 MQKQIT-AKR--GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAtEKNKMAGELEVLRSQerrlkekvaN 808
|
810
....*....|....
gi 2214681115 1461 LEVELDQAREKYVQ 1474
Cdd:pfam15921 809 MEVALDKASLQFAE 822
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1211-1654 |
2.94e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1211 RGQQEAERKSS-LISSLEEEVSilnrQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSAL--- 1286
Cdd:pfam05557 27 RARIELEKKASaLKRQLDRESD----RNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLada 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1287 REEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqql 1366
Cdd:pfam05557 103 REVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRI---------- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1367 qaeqaaaekrfrEELEQSKQAAGGLQAELMRAQRELGelgslrqKIVEQERAAQQLRAEKasyaEQLSMLKKAHGLLAEE 1446
Cdd:pfam05557 173 ------------KELEFEIQSQEQDSEIVKNSKSELA-------RIPELEKELERLREHN----KHLNENIENKLLLKEE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1447 NRGLgeRANLGRQfleveldqarEKYVQELAAVRTDAEtHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQR---FQ 1523
Cdd:pfam05557 230 VEDL--KRKLERE----------EKYREEAATLELEKE-KLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQReivLK 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1524 EERQKLTAQVEQLEVFQRE-------QTKQVEELSKKLTEHD-QASKVQQQKLKAFQAQRG------------------- 1576
Cdd:pfam05557 297 EENSSLTSSARQLEKARREleqelaqYLKKIEDLNKKLKRHKaLVRRLQRRVLLLTKERDGyrailesydkeltmsnysp 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1577 -------ESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQL--QDLEELQKENKELRSE 1647
Cdd:pfam05557 377 qllerieEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYskEEVDSLRRKLETLELE 456
|
....*..
gi 2214681115 1648 AERLGRE 1654
Cdd:pfam05557 457 RQRLREQ 463
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
572-1425 |
3.07e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLES---LQQQLQAANDARDNAQTSVtqAQQEKAElsqkige 648
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSAResdLEQDYQAASDHLNLVQTAL--RQQEKIE------- 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 649 lhacieashqeqrQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKITKGSLEEEKRraadALKEQQC 728
Cdd:COG3096 351 -------------RYQEDLEELTERLEEQEEVVEEAA---EQLAEAEARLEAAEEEVDSLKSQLADYQQ----ALDVQQT 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 729 RATEMEAESRSLmeqrEREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRH-----ELAEATASQHRAESE-CERLIR 802
Cdd:COG3096 411 RAIQYQQAVQAL----EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEleqklSVADAARRQFEKAYElVCKIAG 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 803 EVESRQKRFEARQQ-EEARYGAMFQEQLMALKgektgQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQVQEKEVR 881
Cdd:COG3096 487 EVERSQAWQTARELlRRYRSQQALAQRLQQLR-----AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 882 AQKLVDDLSALQEkmAATNKEVACLKTLVLKAGEQQETASlellKEPP-RAANRASDQLGEQQGRPFSSTHAAVKAMERE 960
Cdd:COG3096 562 LEAQLEELEEQAA--EAVEQRSELRQQLEQLRARIKELAA----RAPAwLAAQDALERLREQSGEALADSQEVTAAMQQL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 961 aeqmggeLERLRAALIkSQGQQQEERGQQEREVARLTQERGQAQADLAQekaakaeLEMRLQNTLNEQRVEFAALQEA-- 1038
Cdd:COG3096 636 -------LEREREATV-ERDELAARKQALESQIERLSQPGGAEDPRLLA-------LAERLGGVLLSEIYDDVTLEDApy 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1039 -------LAHAL---------------------------------------TEKEGTDqeLAKLRGQE------------ 1060
Cdd:COG3096 701 fsalygpARHAIvvpdlsavkeqlagledcpedlyliegdpdsfddsvfdaEELEDAV--VVKLSDRQwrysrfpevplf 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1061 ---------AAQRTELKELQQTLEQLKIQLVKKEKEHPAGGASgedasgPGTQSETAGKTDaPGPELQALRAEISKLEQQ 1131
Cdd:COG3096 779 graarekrlEELRAERDELAEQYAKASFDVQKLQRLHQAFSQF------VGGHLAVAFAPD-PEAELAALRQRRSELERE 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1132 cqqqqqqveglthsLKSERACRAEQDKALETLQGQLEEKARELGHnqaASASAQRELQALRAKAQDHSKAEEEWKAQVAR 1211
Cdd:COG3096 852 --------------LAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQ---ANLLADETLADRLEELREELDAAQEAQAFIQQ 914
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1212 GQQEAERksslissLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQ 1291
Cdd:COG3096 915 HGKALAQ-------LEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNE 987
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1292 SLREEVEkqrvvsensrqelasQAERA-EELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLP-----AKHLCQQ 1365
Cdd:COG3096 988 KLRARLE---------------QAEEArREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQeleelGVQADAE 1052
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1366 LQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRelgELGSLRQKIVEQERAAQQLRAE 1425
Cdd:COG3096 1053 AEERARIRRDELHEELSQNRSRRSQLEKQLTRCEA---EMDSLQKRLRKAERDYKQEREQ 1109
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1397-1658 |
3.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1397 RAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAhgllaEENRGLGERANLGRQFLEVELDQARekyVQEL 1476
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERL-----AELEYLRAALRLWFAQRRLELLEAE---LEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1477 AAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKvkvleerqrfqeerqklTAQVEQLEvfqreqtKQVEELSKKLTE 1556
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNG-----------------GDRLEQLE-------REIERLERELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1557 HDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEhyklqmekakthyDAKKQQNQKLQEQLQDLEE 1636
Cdd:COG4913 357 RERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE-------------EALAEAEAALRDLRRELRE 423
|
250 260
....*....|....*....|..
gi 2214681115 1637 LQKENKELRSEAERLGRELQQA 1658
Cdd:COG4913 424 LEAEIASLERRKSNIPARLLAL 445
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
313-649 |
3.43e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 313 QLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDQA 392
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 393 TRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQ------------ 460
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQsekeqltywkem 698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 461 --QLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtglNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ 538
Cdd:TIGR00618 699 laQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAR-------EDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 539 AAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQL 618
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851
|
330 340 350
....*....|....*....|....*....|.
gi 2214681115 619 QAANDARDNAQtsvtQAQQEKAELSQKIGEL 649
Cdd:TIGR00618 852 LKYEECSKQLA----QLTQEQAKIIQLSDKL 878
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
319-699 |
3.79e-05 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 48.90 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 319 GDLSFKVREFANHLQQLQGAFNDLIEEHS-KASQEWAEKQARLENELSTAlqDKKCLEEKNEILQGKLSQLEDQATRLQ- 396
Cdd:pfam13166 88 GEESIEIQEKIAKLKKEIKDHEEKLDAAEaNLQKLDKEKEKLEADFLDEC--WKKIKRKKNSALSEALNGFKYEANFKSr 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 397 -----ESPAPEKGEVLGDAlqldtlkQEAAKLATDNTQLQTRVETLECerGKQEAQLLAERSRFEDEKQQLASLIADLQS 471
Cdd:pfam13166 166 llreiEKDNFNAGVLLSDE-------DRKAALATVFSDNKPEIAPLTF--NVIDFDALEKAEILIQKVIGKSSAIEELIK 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 472 SVSNLSQAKEELEQASQAQG----------AQLTAQLTSMTGLNATLQQRD-QELASLKEQAKKEQAQMLQTMQEQEQAA 540
Cdd:pfam13166 237 NPDLADWVEQGLELHKAHLDtcpfcgqplpAERKAALEAHFDDEFTEFQNRlQKLIEKVESAISSLLAQLPAVSDLASLL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 541 QGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIvaeareaslrerdtarqqletveKEKDAKLESLQQQLQA 620
Cdd:pfam13166 317 SAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIEL-----------------------DSVDAKIESINDLVAS 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 621 AND--ARDNAQTSVTQAQQEKAELS---QKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQ 695
Cdd:pfam13166 374 INEliAKHNEITDNFEEEKNKAKKKlrlHLVEEFKSEIDEYKDKYAGLEKAINSLEKEIKNLEA---EIKKLREEIKELE 450
|
....
gi 2214681115 696 EQLR 699
Cdd:pfam13166 451 AQLR 454
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
577-954 |
4.50e-05 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 49.06 E-value: 4.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 577 QQLAIVAEAREASLRERDTARQQ-LETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGElhaciea 655
Cdd:NF012221 1503 KTLKLTAKAGSNRLEFKGTGHNDgLGYILDNVVATSESSQQADAVSKHAKQDDAAQNALADKERAEADRQRLE------- 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 656 shQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGsleeekrraADALKEQQCRATEMEA 735
Cdd:NF012221 1576 --QEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEESRAVTKELTTLAQG---------LDALDSQATYAGESGD 1644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 736 ESRSLMEQR--EREQKELEQEKagrKGLEARIQQLEEAHQAETEALRHELAEATASQHRAesecERLIREVESRQKrfEA 813
Cdd:NF012221 1645 QWRNPFAGGllDRVQEQLDDAK---KISGKQLADAKQRHVDNQQKVKDAVAKSEAGVAQG----EQNQANAEQDID--DA 1715
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 814 RQQEEARYGAMFQEQLMALKGEKTGQEVQEEAveihseGQPGQQQSQLAQLHASLAKAiqqvqekevraqklvDDLSALQ 893
Cdd:NF012221 1716 KADAEKRKDDALAKQNEAQQAESDANAAANDA------QSRGEQDASAAENKANQAQA---------------DAKGAKQ 1774
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 894 EKMAATNKEVACLKTLVLKAGEQQETA--SLELLKEPPRAAN-RASDQLGEQQGRPFSSTHAAV 954
Cdd:NF012221 1775 DESDKPNRQGAAGSGLSGKAYSVEGVAepGSHINPDSPAAADgRFSEGLTEQEQEALEGATNAV 1838
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
511-834 |
4.60e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 4.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 511 RDQELASLKEQAKKEQAQMLQT---MQEQEQAAQGLRQQV------------EQLSSSLKLKEQQLEEAAKEQEATRQDH 575
Cdd:COG3096 783 REKRLEELRAERDELAEQYAKAsfdVQKLQRLHQAFSQFVgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQL 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 576 AQQLaivaeareaslrerDTARQQLETVEK-EKDAKL---ESLQQQLQAANDARDNAQtsvtQAQQEKAELSQKIGELH- 650
Cdd:COG3096 863 RQQL--------------DQLKEQLQLLNKlLPQANLladETLADRLEELREELDAAQ----EAQAFIQQHGKALAQLEp 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 651 --ACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQ--------EKAQLQEQLRALEESLKITKGSLEEEKRRAA 720
Cdd:COG3096 925 lvAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQrrphfsyeDAVGLLGENSDLNEKLRARLEQAEEARREAR 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 721 DALKEQQCRATEMEAESRSLMEQREREQKELeqekagrKGLEARIQQLEEAHQAETEAL----RHELAEAtASQHRA--- 793
Cdd:COG3096 1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTL-------QELEQELEELGVQADAEAEERarirRDELHEE-LSQNRSrrs 1076
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2214681115 794 ESECERLIREVESRQKRFEARQQEEaRYGAMFQEQLMALKG 834
Cdd:COG3096 1077 QLEKQLTRCEAEMDSLQKRLRKAER-DYKQEREQVVQAKAG 1116
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1375-1716 |
5.14e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1375 KRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLGER- 1453
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKi 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1454 ANLGRQFLEVELD-QAREKYVQELAAVRTDAETHlaemrqeaqstsRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQ 1532
Cdd:PRK03918 262 RELEERIEELKKEiEELEEKVKELKELKEKAEEY------------IKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1533 VEQLEvfqrEQTKQVEELSKKLTEHDQASKVQQQKLKAFQaqrgesqqEVQRLQTQLNELQAQLSQKEqaAEHYKLQMEK 1612
Cdd:PRK03918 330 IKELE----EKEERLEELKKKLKELEKRLEELEERHELYE--------EAKAKKEELERLKKRLTGLT--PEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1613 AKThydAKKQQNQKLQEQLQDLEELQKENKELRSEAERL----------GRELQQaglktKEAEQTCRHLTAQVRSLEAQ 1682
Cdd:PRK03918 396 LEK---AKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcGRELTE-----EHRKELLEEYTAELKRIEKE 467
|
330 340 350
....*....|....*....|....*....|....
gi 2214681115 1683 VAHADQQLRDLGKFQVATDALKSREPQVKPQLDL 1716
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-790 |
5.52e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 608 DAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKV 687
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 688 VQEK--------------------------AQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLM 741
Cdd:COG3883 95 LYRSggsvsyldvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2214681115 742 EQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQ 790
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1534-1704 |
5.98e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1534 EQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRG---------ESQQEVQRLQTQLNELQAQLSQKEQAAE 1604
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1605 HYKLQMEKAKTH---------YDAKKQQNQKLQEQLQDLEELQKEN----KELRSEAERLGRELQQAGLKTK-EAEQTCR 1670
Cdd:COG3206 244 ALRAQLGSGPDAlpellqspvIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQEAQRILaSLEAELE 323
|
170 180 190
....*....|....*....|....*....|....
gi 2214681115 1671 HLTAQVRSLEAQVAHADQQLRDLGKFQVATDALK 1704
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
374-551 |
6.18e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 6.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 374 LEEKNEILQGKLSQLEDQATRLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNT--QLQTRVETLECERGKQEAQLLAE 451
Cdd:COG3206 210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLRAQLAELEAELAELSARYTPN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 452 RSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQ 531
Cdd:COG3206 290 HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
170 180
....*....|....*....|
gi 2214681115 532 TMQEQEQAAQGLRQQVEQLS 551
Cdd:COG3206 370 LLQRLEEARLAEALTVGNVR 389
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-923 |
7.61e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 7.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 244 EKDAQIAMMQQRIDHLALLNEKQAASSQEPseleelrgkneslTVRLHETLKQCQNLKTEKSQMDRKISQLSEengDLSF 323
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNELHEKQKFYLRQS-------------VIDLQTKLQEMQMERDAMADIRRRESQSQE---DLRN 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 324 KVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQARLE---NELSTALQDKKCLEEKNEILQGKLSQLEDQAT------- 393
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEgvlQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLgsaiski 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 394 --RLQESPAPEKGEVLGDALQLDTLKQEAaklatdntqlQTRVETLECERGKQEAQLLAERsrfEDEKQQLASLIADLQS 471
Cdd:pfam15921 226 lrELDTEISYLKGRIFPVEDQLEALKSES----------QNKIELLLQQHQDRIEQLISEH---EVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 472 SVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQE--------LASLKEQAKKEQAQMLQTMQEQEQAAQ-- 541
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmyedkIEELEKQLVLANSELTEARTERDQFSQes 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 542 -GLRQQVEQLSSSLKLKEQQLeEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLE----TVEKEKDAKLESLQQ 616
Cdd:pfam15921 373 gNLDDQLQKLLADLHKREKEL-SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEallkAMKSECQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 617 QLQAANDARDNAQTSVTQAQQEKAELSQKIGELHA---CIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 694 LQEQLRALEESLKITKGSLE------EEKRRAADALKEQQCRATE-----------MEAESRSLMEQREREQKELEQEKA 756
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQTECEalklqmAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDRRLELQEFKI 611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 757 GRKGLEARIQQLeEAHQAETEALRHELAEATASQHRA----ESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMAL 832
Cdd:pfam15921 612 LKDKKDAKIREL-EARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 833 KGEKTGQEVQEEAVEIHSEgqpgQQQSQLAQLHASLAKAI-------QQVQEKEVRAQKLVDDLSALQEKMAATNKEVAC 905
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELE----QTRNTLKSMEGSDGHAMkvamgmqKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
|
730
....*....|....*...
gi 2214681115 906 LKTLVLKAGEQQETASLE 923
Cdd:pfam15921 767 LKEEKNKLSQELSTVATE 784
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
469-736 |
8.34e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 469 LQSSVSNLSQAKEELEqasQAQGAQLTAQLTSMTGLNATLQQRDQELASLkEQAKKEQaqmlQTMQEQEQAAQGLRQQVE 548
Cdd:PRK10929 18 YAATAPDEKQITQELE---QAKAAKTPAQAEIVEALQSALNWLEERKGSL-ERAKQYQ----QVIDNFPKLSAELRQQLN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 549 QLSSSLKLKEQQLEEAAKEQEaTRQDHAQQLaivAEAREASlRERDTARQ------QLETVEKEKDAKLESLQQQLQAAN 622
Cdd:PRK10929 90 NERDEPRSVPPNMSTDALEQE-ILQVSSQLL---EKSRQAQ-QEQDRAREisdslsQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 623 dardNAQTSVTQAQ--QEKAELSQKigelhacieashqeqrqvQARVTELE-AQLKA--EQQKTTEREKVVQEKA-QLQE 696
Cdd:PRK10929 165 ----TPNTPLAQAQltALQAESAAL------------------KALVDELElAQLSAnnRQELARLRSELAKKRSqQLDA 222
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2214681115 697 QLRALEESLKITKgsleeeKRRAADALKEqqcraTEMEAE 736
Cdd:PRK10929 223 YLQALRNQLNSQR------QREAERALES-----TELLAE 251
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
655-904 |
8.48e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 8.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 655 ASHQEQRQVQARVTELEAQLKAEQQkttEREKVVQEKAQLQEQLRALEESLKitkgsleeekrRAADALKEQQCRATEME 734
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEK---ELAALKKEEKALLKQLAALERRIA-----------ALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 735 AESRSLMEQREREQKELEQEkagRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESEcERLIREVESRQKRFEAR 814
Cdd:COG4942 83 AELAELEKEIAELRAELEAQ---KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL-KYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 815 QQEEARYGAMFQEQLMALKGEKTGQEVQEEAVeihsEGQPGQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSALQE 894
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAAL----EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
250
....*....|
gi 2214681115 895 KMAATNKEVA 904
Cdd:COG4942 235 EAAAAAERTP 244
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1167-1690 |
8.49e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 8.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1167 LEEKARElGHNQAASASAQRELQALRAKAQD-----HSKAEEEWKAQVARGQQEAERK-SSLISSLEEEVSILNRQVLEK 1240
Cdd:pfam15921 283 LTEKASS-ARSQANSIQSQLEIIQEQARNQNsmymrQLSDLESTVSQLRSELREAKRMyEDKIEELEKQLVLANSELTEA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1241 EGESKELKRLVVAESEKSQKL----EERLRLLQVETASNSaRAAERSSA-------LREEVQSLREEVEKQRVVSENSRQ 1309
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLladlHKREKELSLEKEQNK-RLWDRDTGnsitidhLRRELDDRNMEVQRLEALLKAMKS 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1310 ELASQAER--------------AEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEK 1375
Cdd:pfam15921 441 ECQGQMERqmaaiqgkneslekVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEIT 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1376 RFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEkasyAEQLSMLKKAHGLLAeeNRGLGERAN 1455
Cdd:pfam15921 521 KLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQ----IENMTQLVGQHGRTA--GAMQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1456 LGRQFLEVELDqarekyVQELAAVRTDAETHLAEMrqEAQSTSRELEvmTAKYEGAKVKVLEERQRFQEERQKLTAQVEQ 1535
Cdd:pfam15921 595 LEKEINDRRLE------LQEFKILKDKKDAKIREL--EARVSDLELE--KVKLVNAGSERLRAVKDIKQERDQLLNEVKT 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1536 LEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAfqaQRGESQQEVQRLQTQLNELQAQLSQKEQAAehykLQMEKAKT 1615
Cdd:pfam15921 665 SRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKSMEGSDGHAMKVA----MGMQKQIT 737
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 1616 hydAKKQQNQKLQEQLQDLEEL----QKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQL 1690
Cdd:pfam15921 738 ---AKRGQIDALQSKIQFLEEAmtnaNKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
341-581 |
8.98e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.98 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 341 DLIEEHSKASQEWAEKQARLENELSTaLQDKKCLEEKNEILQ-------GKLSQLEDQATRLQESPAPEKGEVLgDALQL 413
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLAL-LDKIDRQKEETEQLKqqlaqapAKLRQAQAELEALKDDNDEETRETL-STLSL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 414 DTLKQeaaKLATDNTQLQTRVETLecerGKQEAQLLAERSRFE----------DEKQQLASLIADLQSSVSNLS---QAK 480
Cdd:PRK11281 124 RQLES---RLAQTLDQLQNAQNDL----AEYNSQLVSLQTQPEraqaalyansQRLQQIRNLLKGGKVGGKALRpsqRVL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 481 EELEQAS-QAQGAQLTAQLTSMTGLNATLQQRdQELASLKEQakkEQAQMLQTMQEqeqAAQGLRqqveqlsssLKLKEQ 559
Cdd:PRK11281 197 LQAEQALlNAQNDLQRKSLEGNTQLQDLLQKQ-RDYLTARIQ---RLEHQLQLLQE---AINSKR---------LTLSEK 260
|
250 260
....*....|....*....|....*.
gi 2214681115 560 QLEEAAKEQEATRQDH----AQQLAI 581
Cdd:PRK11281 261 TVQEAQSQDEAARIQAnplvAQELEI 286
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
456-621 |
9.10e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.88 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQLASLIADLQSSVSNLSQAKEELeqasQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQE 535
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDL----QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 536 QEQAAQGLRQQVEQLSsslklkeQQLeeaakeqEATRqdhaQQLAIVAEAREASlrerdtarqqlETVEKEKDAKLESLQ 615
Cdd:PRK09039 128 EKQVSARALAQVELLN-------QQI-------AALR----RQLAALEAALDAS-----------EKRDRESQAKIADLG 178
|
....*.
gi 2214681115 616 QQLQAA 621
Cdd:PRK09039 179 RRLNVA 184
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
333-637 |
1.00e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.74 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 333 QQLQGAFNDLieEHSKASQEWAEKQARLENE---LSTALQDKKCLEEKN---------------EILQGKlSQLEDQATR 394
Cdd:PRK10929 48 EALQSALNWL--EERKGSLERAKQYQQVIDNfpkLSAELRQQLNNERDEprsvppnmstdaleqEILQVS-SQLLEKSRQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 395 LQESPapEKGEVLGDAL-QLDTLKQEAAKLATD-------------------NTQLQT-------RVETLECergkqeAQ 447
Cdd:PRK10929 125 AQQEQ--DRAREISDSLsQLPQQQTEARRQLNEierrlqtlgtpntplaqaqLTALQAesaalkaLVDELEL------AQ 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 448 LLAE------RSRFEDEKQQLASLIADLQSSVSNL-SQAKEELEQASQA------QGAQLTAQLTSMTGLNATLQQrdqe 514
Cdd:PRK10929 197 LSANnrqelaRLRSELAKKRSQQLDAYLQALRNQLnSQRQREAERALEStellaeQSGDLPKSIVAQFKINRELSQ---- 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 515 laslkeqAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRqdhaQQLAIVAEAREASLRERD 594
Cdd:PRK10929 273 -------ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR----AQVARLPEMPKPQQLDTE 341
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2214681115 595 TARQQLETVekekdaKLESLQQQLQAANDARDNAQTSVTQAQQ 637
Cdd:PRK10929 342 MAQLRVQRL------RYEDLLNKQPQLRQIRQADGQPLTAEQN 378
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1272-1657 |
1.22e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1272 TASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKfFQKEQALSALQLEHTSTQA 1351
Cdd:PRK04863 277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1352 LVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELgslrQKIVEQERAAQQL--RAEKASY 1429
Cdd:PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQAleRAKQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1430 AEQLSmLKKAHGLLAE---ENRGLGERANLGRQFLEVElDQAREKYVQELAAVRTDAethlAEM-RQEAQSTSRELEVMT 1505
Cdd:PRK04863 432 LPDLT-ADNAEDWLEEfqaKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIA----GEVsRSEAWDVARELLRRL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1506 AKYEGAKVKVLEERQRFQEERQKLTAQ---VEQLEVFQREQTKQV---EELSKKLTEHDQaskvQQQKLKAFQAQRGESQ 1579
Cdd:PRK04863 506 REQRHLAEQLQQLRMRLSELEQRLRQQqraERLLAEFCKRLGKNLddeDELEQLQEELEA----RLESLSESVSEARERR 581
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1580 QEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQ 1657
Cdd:PRK04863 582 MALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
448-760 |
1.23e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 47.00 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 448 LLAERSRFEDEKQQLASLIADLqssvsnlsQAKEELEQASQaqgaqltaqltsmtglnatlQQRDQELASLKEQaKKEQA 527
Cdd:PRK11637 35 LCAFSAHASDNRDQLKSIQQDI--------AAKEKSVRQQQ--------------------QQRASLLAQLKKQ-EEAIS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 528 QMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQleeaakeqeatrqdHAQQLAIVAEAREASLRERDTARQQLeTVEKEK 607
Cdd:PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQ--------------QAAQERLLAAQLDAAFRQGEHTGLQL-ILSGEE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 608 DAKLESLQQQLQAANDARdnaQTSVTQAQQEKAELSQKIGELhaciEASHQEQRQVqarVTELEAQLKAEQQKTTEREKV 687
Cdd:PRK11637 151 SQRGERILAYFGYLNQAR---QETIAELKQTREELAAQKAEL----EEKQSQQKTL---LYEQQAQQQKLEQARNERKKT 220
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 688 vqekaqlqeqLRALEESLKITKGSLEEEKRRAAdALKEQQCRAtEMEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:PRK11637 221 ----------LTGLESSLQKDQQQLSELRANES-RLRDSIARA-EREAKARAEREAREAARVRDKQKQAKRKG 281
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
464-904 |
1.39e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 46.82 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 464 SLIADLQSSVSNLSQAKEELEQASQAQGAQLtAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGL 543
Cdd:COG5278 76 SFLEPYEEARAEIDELLAELRSLTADNPEQQ-ARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEI 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 544 RQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAAND 623
Cdd:COG5278 155 RARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALEL 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 624 ARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEE 703
Cdd:COG5278 235 LAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAA 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 704 SLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHEL 783
Cdd:COG5278 315 AAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 784 AEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQ 863
Cdd:COG5278 395 IAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAAL 474
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2214681115 864 LHASLAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVA 904
Cdd:COG5278 475 AALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEA 515
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1467-1689 |
1.50e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1467 QAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQ 1546
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1547 VEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQK 1626
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1627 LQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTcrhLTAQVRSLEAQVAHADQQ 1689
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE---LEALIARLEAEAAAAAER 242
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
503-725 |
1.60e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 503 GLNATLQQRDQELASLKEQAK-------------KEQAQMLQTMQEQE-QAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQ 568
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKtynknieeqrkknGENIARKQNKYDELvEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 569 EATRQDHAQQLAIVAE-AREASLRERD----TARQQLET----VEKEKDaKLESLQQQLQAANDARDNAQ---TSVTQAQ 636
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQfQKVIKMYEKGgvcpTCTQQISEgpdrITKIKD-KLKELQHSLEKLDTAIDELEeimDEFNEQS 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 637 QEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKaeqQKTTEREKVVQEKaqlqeqlraleESLKITKGSLEEEK 716
Cdd:PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV---DNAEELAKLQDEL-----------DKIVKTKSELVKEK 402
|
250
....*....|..
gi 2214681115 717 RR---AADALKE 725
Cdd:PHA02562 403 YHrgiVTDLLKD 414
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1281-1695 |
1.75e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1281 ERSSALREEVQSLREEVEkqrvvsensrqELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSEllpak 1360
Cdd:PRK02224 206 ERLNGLESELAELDEEIE-----------RYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAE----- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1361 hlcqqlqaeQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGeLGSLRQKIVEQERAAqqLRAEKASYAEQLSMLKKAH 1440
Cdd:PRK02224 270 ---------TEREREELAEEVRDLRERLEELEEERDDLLAEAG-LDDADAEAVEARREE--LEDRDEELRDRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1441 GLLAEENRGLGERANLgrqfLEVELDQAREKyVQELAAVRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKV---KVLE 1517
Cdd:PRK02224 338 QAHNEEAESLREDADD----LEERAEELREE-AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdlgNAED 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1518 ERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLS 1597
Cdd:PRK02224 413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1598 QKEQAAEHYKlQMEKAKTHYDAKKQQNQKLQEQLQD----LEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLT 1673
Cdd:PRK02224 493 EVEERLERAE-DLVEAEDRIERLEERREDLEELIAErretIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420
....*....|....*....|..
gi 2214681115 1674 AQVRSLEAQVAHADQQLRDLGK 1695
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLER 593
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
608-702 |
1.77e-04 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 46.26 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 608 DAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV-QARVTELEAQLK-AEQQKTTERE 685
Cdd:TIGR04320 260 QAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALAnAEARLAKAKE 339
|
90
....*....|....*..
gi 2214681115 686 KVVQEKAQLQEQLRALE 702
Cdd:TIGR04320 340 ALANLNADLAKKQAALD 356
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
430-803 |
2.09e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.04 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQaqgaQLTAQLTSMTGLNATLQ 509
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELR----QSREKHEELEEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 510 QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKeQEATRQDHAQQLAIVAEAREAS 589
Cdd:pfam07888 108 ASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGA-QRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 590 LRERDTARQQLETVEKEKDAKLESLQqqlqaanDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTE 669
Cdd:pfam07888 187 LRSLSKEFQELRNSLAQRDTQVLQLQ-------DTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 670 LEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESrslmeqrEREQK 749
Cdd:pfam07888 260 LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAEL-------QRLEE 332
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 750 ELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIRE 803
Cdd:pfam07888 333 RLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAE 386
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
554-908 |
2.26e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 554 LKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVT 633
Cdd:COG4372 18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 634 QAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREkvvQEKAQLQEQLRALEESLKITKGSLE 713
Cdd:COG4372 98 QAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAERE---EELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 714 EEKRRAADALKEQQCRATEMEAEsrSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRA 793
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAE--KEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 794 ESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQ 873
Cdd:COG4372 253 EEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELAL 332
|
330 340 350
....*....|....*....|....*....|....*
gi 2214681115 874 QVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKT 908
Cdd:COG4372 333 AILLAELADLLQLLLVGLLDNDVLELLSKGAEAGV 367
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
578-903 |
2.29e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.83 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 578 QLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASH 657
Cdd:pfam19220 31 QLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQARVTELEAQLKAEqqkTTEREKVVQEKAQLQEQLRALEESLKITKGSL----------EEEKRRAADALKEQQ 727
Cdd:pfam19220 111 IELRDKTAQAEALERQLAAE---TEQNRALEEENKALREEAQAAEKALQRAEGELatarerlallEQENRRLQALSEEQA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 728 CRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEAT----ASQHRAES------EC 797
Cdd:pfam19220 188 AELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRmkleALTARAAAteqllaEA 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 798 ERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEihsegqpgQQQSQLAQLHASLAKAIqqvQE 877
Cdd:pfam19220 268 RNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQ--------RARAELEERAEMLTKAL---AA 336
|
330 340
....*....|....*....|....*.
gi 2214681115 878 KEVRAQKLVDDLSALQEKMAATNKEV 903
Cdd:pfam19220 337 KDAALERAEERIASLSDRIAELTKRF 362
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
508-677 |
2.36e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 508 LQQRDQELASLKEQAKKEQAQmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEARE 587
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAE-LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 588 ASLRERD-----TARQQLETVEKEKDAKLESLQQQLQAANDARDnaqtsvtqaqQEKAELSQKIGELHACIEASHQEQRQ 662
Cdd:COG1579 91 YEALQKEieslkRRISDLEDEILELMERIEELEEELAELEAELA----------ELEAELEEKKAELDEELAELEAELEE 160
|
170
....*....|....*
gi 2214681115 663 VQARVTELEAQLKAE 677
Cdd:COG1579 161 LEAEREELAAKIPPE 175
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
1572-1694 |
2.43e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 46.48 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1572 QAQRGESQQEVQRLQTQLnELQAQlsQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEA-ER 1650
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQL-ELQAR--EKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERkQK 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2214681115 1651 LGRELQQAGLKTKEAEQTCRHLTaqvrsleaqvahaDQQLRDLG 1694
Cdd:PRK11448 218 RKEITDQAAKRLELSEEETRILI-------------DQQLRKAG 248
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
462-837 |
2.61e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.83 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 462 LASLIADLQSSVSNLSQAKEELEQAsQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQ 541
Cdd:pfam19220 22 LRSLKADFSQLIEPIEAILRELPQA-KSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 542 GLRQQVEQLSSSLKLKEQQLEEAAKeqeatrqdhaqQLAIVAEAREASLRERDTARQQLETVEK---EKDAKLESLQQQL 618
Cdd:pfam19220 101 EAEAAKEELRIELRDKTAQAEALER-----------QLAAETEQNRALEEENKALREEAQAAEKalqRAEGELATARERL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 619 QAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQAR-VTELEAQLKAEQQKTTEREKVVQEKAQLQEQ 697
Cdd:pfam19220 170 ALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQlAAEQAERERAEAQLEEAVEAHRAERASLRMK 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 698 LRALEESLKITKgSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETE 777
Cdd:pfam19220 250 LEALTARAAATE-QLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAE 328
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 778 ALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKT 837
Cdd:pfam19220 329 MLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAERA 388
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
381-756 |
2.67e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 381 LQGKLSQLEDQATRL-----QESPAPEKGEVLGDALQLDtlKQEAAKLATDNTQLQTRVETLECERGKQEAQLLaersRF 455
Cdd:pfam10174 298 LSKKESELLALQTKLetltnQNSDCKQHIEVLKESLTAK--EQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ----DL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQLASLIAD--------------LQSSVSNLSQA-------KEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQE 514
Cdd:pfam10174 372 TEEKSTLAGEIRDlkdmldvkerkinvLQKKIENLQEQlrdkdkqLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERI 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 515 LASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAakeqeatrQDHAQQLAivaeareASLRERD 594
Cdd:pfam10174 452 IERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDL--------KEHASSLA-------SSGLKKD 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTsvtqaqqeKAELSQKIGELHACIEASHQEQRQVQARVTELEAQL 674
Cdd:pfam10174 517 SKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRT--------NPEINDRIRLLEQEVARYKEESGKAQAEVERLLGIL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 675 K-AEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESR-----SLMEQREREQ 748
Cdd:pfam10174 589 ReVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQqlqleELMGALEKTR 668
|
....*...
gi 2214681115 749 KELEQEKA 756
Cdd:pfam10174 669 QELDATKA 676
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
513-817 |
2.87e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.66 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 513 QELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKL---KEQQLEEAAKEQEATRQDHAQQLAIVAEAREAS 589
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQsreKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 590 ---LRERDTARQQLETVEKEKDAKLESLQQ-------QLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQE 659
Cdd:pfam07888 128 earIRELEEDIKTLTQRVLERETELERMKErakkagaQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQ 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 660 QRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEE---EKRRAADALKEQQCRATEME-- 734
Cdd:pfam07888 208 VLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSmaaQRDRTQAELHQARLQAAQLTlq 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 735 -AESRSLM--------EQREREQKELEQEKAGRKGLEARIQQLEEAHQAET---EALRHELAEATASQHRAESECERLIR 802
Cdd:pfam07888 288 lADASLALregrarwaQERETLQQSAEADKDRIEKLSAELQRLEERLQEERmerEKLEVELGREKDCNRVQLSESRRELQ 367
|
330
....*....|....*
gi 2214681115 803 EVESRQKRFEARQQE 817
Cdd:pfam07888 368 ELKASLRVAQKEKEQ 382
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1153-1357 |
2.95e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1153 RAEQDKALETLQGQLEEKARELghnqaasASAQRELQALRAKAQdhskaeeewkaqVARGQQEAERKSSLISSLEEEVSI 1232
Cdd:COG3206 170 REEARKALEFLEEQLPELRKEL-------EEAEAALEEFRQKNG------------LVDLSEEAKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1233 LNRQVLEKEGESKELKRLV---------VAESEKSQKLEERLRLLQVETASNSARAAERSS---ALREEVQSLREEVEKQ 1300
Cdd:COG3206 231 ARAELAEAEARLAALRAQLgsgpdalpeLLQSPVIQQLRAQLAELEAELAELSARYTPNHPdviALRAQIAALRAQLQQE 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 1301 -RVVSENSRQELASQAERAEELGQELKAWQEKFF---QKEQALSALQLEHTSTQALVSELL 1357
Cdd:COG3206 311 aQRILASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVARELYESLL 371
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1033-1667 |
2.98e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1033 AALQEALAHALTEKEGTDQELAKLRgqeaaQRTELKELQQTLEQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAgktd 1112
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLT-----QKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKA---- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1113 APGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAasasaQRELQALR 1192
Cdd:TIGR00618 293 APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD-----AHEVATSI 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1193 AKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:TIGR00618 368 REISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1273 ASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERAEELgQELKAWQEKFFQKEQALSALQLEHTSTQAL 1352
Cdd:TIGR00618 448 TCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL-LELQEEPCPLCGSCIHPNPARQDIDNPGPL 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1353 VSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQaaggLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQ 1432
Cdd:TIGR00618 527 TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS----LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1433 LSMLKKAhglLAEENRGLGERAN--LGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELEvmtAKYEG 1510
Cdd:TIGR00618 603 LSEAEDM---LACEQHALLRKLQpeQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLP---KELLA 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1511 AKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQ-TQL 1589
Cdd:TIGR00618 677 SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQArTVL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1590 NEL---QAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQL---------------------------------QD 1633
Cdd:TIGR00618 757 KARteaHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLktleaeigqeipsdedilnlqcetlvqeeeqflSR 836
|
650 660 670
....*....|....*....|....*....|....
gi 2214681115 1634 LEELQKENKELRSEAERLGRELQQAGLKTKEAEQ 1667
Cdd:TIGR00618 837 LEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1257-1707 |
3.11e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1257 KSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSENSRQELASQAERA--EELGQELKAWQEKFFQ 1334
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLkkQQLLKQLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1335 KEQALSALQLEHTSTQALVSELLPAKHL--CQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKI 1412
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIKAVtqIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1413 VEQERAAQQLRAEKASYAEQLSMLKKAHGlLAEENRGLGERANLGRQFLEVE---------LDQAREKYVQELAAVRTDA 1483
Cdd:TIGR00618 355 IHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILqreqatidtRTSAFRDLQGQLAHAKKQQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1484 ETHLAEMRQEAQSTSRELEVMTAKyegaKVKVLEERQRFQEERQKLT---------AQVEQLEVFQREQTKQVEELSKKL 1554
Cdd:TIGR00618 434 ELQQRYAELCAAAITCTAQCEKLE----KIHLQESAQSLKEREQQLQtkeqihlqeTRKKAVVLARLLELQEEPCPLCGS 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1555 TEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEqlqDL 1634
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE---DI 586
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1635 EELQKENKELRSEAERLGR-ELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQVATDALKSRE 1707
Cdd:TIGR00618 587 PNLQNITVRLQDLTEKLSEaEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERV 660
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1146-1342 |
3.25e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.82 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1146 LKSERACRAEQDKA------LETLQGQLEEKARELghnqaasASAQRELQALRAKAQDHSKAeeewkaQVARGQQEAERK 1219
Cdd:PRK10929 119 LEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQL-------NEIERRLQTLGTPNTPLAQA------QLTALQAESAAL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1220 SSLISSLE-EEVSILNRQvlekegeskELKRLvvaESEKSQKLEERL--RLLQVETASNSAR------AAERSSALREEV 1290
Cdd:PRK10929 186 KALVDELElAQLSANNRQ---------ELARL---RSELAKKRSQQLdaYLQALRNQLNSQRqreaerALESTELLAEQS 253
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1291 QSLREEVEKQRVVSENSRQELASQAERAEELGQELKAWQEKFFQKEQALSAL 1342
Cdd:PRK10929 254 GDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTL 305
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
357-571 |
3.74e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 357 QARLENELSTALQDKKCLEEKNEILQGKLSQLEDQATRLQES----PAPEKGEVLGDalQLDTLKQEAAKLATDNTQLQT 432
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQ--QLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 433 RVETLE--CERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLS-------QAKEELEQASQAQGAQLTAQLTSMTG 503
Cdd:COG3206 241 RLAALRaqLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 504 LNATLQQRDQELASLKEQAKKEqaqmLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEAR----LAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALT 384
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
445-584 |
3.93e-04 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 45.23 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 445 EAQLLAERSRFEDEKQQLASL-----IADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLK 519
Cdd:COG3524 183 EEEVERAEERLRDAREALLAFrnrngILDPEATAEALLQLIATLEGQLAELEAELAALRSYLSPNSPQVRQLRRRIAALE 262
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 520 EQAKKEQAQMlqTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQ---LAIVAE 584
Cdd:COG3524 263 KQIAAERARL--TGASGGDSLASLLAEYERLELEREFAEKAYTSALAALEQARIEAARQqryLAVIVQ 328
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1517-1658 |
4.07e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1517 EERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGE--SQQEVQRLQTQLNELQA 1594
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEALQKEIESLKR 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1595 QLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLE-ELQKENKELRSEAERLGRELQQA 1658
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKaELDEELAELEAELEELEAEREEL 168
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
543-680 |
4.28e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 44.65 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 543 LRQQVEQLSSSLKLKEQQLEeAAKEQEATRQDHAQQLAIVAEAREaslrERDTARQQLETVEKEKDAKLESlQQQLQAAN 622
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLA-RLEAELGAEAEIAAAEAQLAAAQA----QLDLAQRELERYQALYKKGAVS-QQELDEAR 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 623 DARDNAQTSVTQAQqekAELSQKIGELhacieASHQEQRQVQARVTELEAQLKAEQQK 680
Cdd:COG1566 155 AALDAAQAQLEAAQ---AQLAQAQAGL-----REEEELAAAQAQVAQAEAALAQAELN 204
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
211-483 |
4.59e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 211 QFQMRRLKKQLADERSNRDDLELELSESLKLLTEKDAQIAMMQQRIDHL-ALLNEKQAASSQEPSELEELRGKNESLTVR 289
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALrEALDELRAELTLLNEEAANLRERLESLERR 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 290 LHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREF---ANHLQQLQGAFNDLIEEHSKASQEWAEKQARLENELST 366
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseLEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 367 ALQDKKCLEEKNEILQGKLSQLEDQATRLQESpAPEKGEVLgdalqLDTLKQEAAKLATDNTQLQTRVETLECERGK--- 443
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQER-LSEEYSLT-----LEEAEALENKIEDDEEEARRRLKRLENKIKElgp 986
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2214681115 444 ------QEAQLLAERSRFedekqqLASLIADLQSSVSNLSQAKEEL 483
Cdd:TIGR02168 987 vnlaaiEEYEELKERYDF------LTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1523-1693 |
5.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1523 QEERQKLTAQVEQLEVFQREQ----------TKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNEL 1592
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENqsykqeiknlESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1593 QAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQL----QDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQT 1668
Cdd:TIGR04523 439 NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSInkikQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
170 180
....*....|....*....|....*
gi 2214681115 1669 CRHLTAQVRSLEAQVAHADQQLRDL 1693
Cdd:TIGR04523 519 ISSLKEKIEKLESEKKEKESKISDL 543
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
466-693 |
5.73e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 466 IADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQ 545
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 546 QVEQLSSSLKLKEQQ-LEEAAkeqeatrqDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDA 624
Cdd:COG3883 98 SGGSVSYLDVLLGSEsFSDFL--------DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 625 RDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
568-721 |
5.84e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 568 QEATRQDHA-----QQLAIVAEAreASLRERdtARQQLEtvekekdAKLESLQQQLQAANDARDNAQTSVTQAQQEKAEL 642
Cdd:PRK09039 46 REISGKDSAldrlnSQIAELADL--LSLERQ--GNQDLQ-------DSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 643 SQKIGELHACIEASHQEQRQVQARVTELEAQLkaeqqktterekvvqekAQLQEQLRALEESLKITKGSLEEEKRRAAD 721
Cdd:PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQI-----------------AALRRQLAALEAALDASEKRDRESQAKIAD 176
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1537-1657 |
5.90e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1537 EVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQrgesqqeVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTH 1616
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQ-------VERLEAEVEELEAELEEKDERIERLERELSEARSE 456
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2214681115 1617 YDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQ 1657
Cdd:COG2433 457 ERREIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
459-562 |
6.35e-04 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 44.33 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 459 KQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ 538
Cdd:TIGR04320 253 PNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAY----AAAQAALATAQKELANAQAQALQTAQNNLATAQAALA 328
|
90 100
....*....|....*....|....*...
gi 2214681115 539 AAQG----LRQQVEQLSSSLKLKEQQLE 562
Cdd:TIGR04320 329 NAEArlakAKEALANLNADLAKKQAALD 356
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
660-874 |
7.52e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.07 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 660 QRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKItkgslEEEKRRAADALKEQQCRATEMEAESRS 739
Cdd:TIGR02794 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ-----AEEKQKQAEEAKAKQAAEAKAKAEAEA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 740 LMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRfEARQQEEA 819
Cdd:TIGR02794 141 ERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAA-KAEAEAAA 219
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 820 RYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHASLAKAIQQ 874
Cdd:TIGR02794 220 AAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDKYAAIIQQAIQQ 274
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
504-674 |
8.07e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 8.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 504 LNATLQQRDQELASLKEQAkkeqAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkeqqleeAAKEQEatrQDHAQQLAIVA 583
Cdd:PRK09039 44 LSREISGKDSALDRLNSQI----AELADLLSLERQGNQDLQDSVANLRASL---------SAAEAE---RSRLQALLAEL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 584 EAREASLRERDTarqqletvekEKDAKLESLQQQlqaanDARDNAQTSVTQAQQekAELSQKIGELHACIEASHQEQRQV 663
Cdd:PRK09039 108 AGAGAAAEGRAG----------ELAQELDSEKQV-----SARALAQVELLNQQI--AALRRQLAALEAALDASEKRDRES 170
|
170
....*....|.
gi 2214681115 664 QARVTELEAQL 674
Cdd:PRK09039 171 QAKIADLGRRL 181
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
357-563 |
8.41e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 8.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 357 QARLE--NELSTALQDKKCLEEKNEILQGKLS---------------------QLEDQATRLQESPAPEKGEVLGDALQL 413
Cdd:PLN02939 149 QARLQalEDLEKILTEKEALQGKINILEMRLSetdariklaaqekihveileeQLEKLRNELLIRGATEGLCVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 414 DTLKQEAAKLATDNTQLQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQ 493
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVA-ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 494 LTAQLTSMTGLNATLQQRDQEL--------ASLKE-QAKKEQAQMLQTMQEQEQAAQG-LRQQVEQLSSSLKLKEQQLEE 563
Cdd:PLN02939 308 LLDRATNQVEKAALVLDQNQDLrdkvdkleASLKEaNVSKFSSYKVELLQQKLKLLEErLQASDHEIHSYIQLYQESIKE 387
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1468-1704 |
8.49e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1468 AREKYVQELAAVRTDAE------THLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQR 1541
Cdd:PHA02562 151 ARRKLVEDLLDISVLSEmdklnkDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1542 EQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQ---------AQLSQKEQAAEHYKLQMEK 1612
Cdd:PHA02562 231 TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1613 AKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRD 1692
Cdd:PHA02562 311 LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
250 260
....*....|....*....|...
gi 2214681115 1693 LGK-----------FQVATDALK 1704
Cdd:PHA02562 391 IVKtkselvkekyhRGIVTDLLK 413
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
994-1213 |
9.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 9.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 994 ARLTQERGQAQADLAQEKAAKAELEMR---LQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKEL 1070
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEekaLLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1071 QQTLEQLKIQLVKKEK-EHPAGGASGEDASGPGTQSETAGK-TDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKS 1148
Cdd:COG4942 103 KEELAELLRALYRLGRqPPLALLLSPEDFLDAVRRLQYLKYlAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1149 ERACR-------AEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQ 1213
Cdd:COG4942 183 LEEERaalealkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
459-1219 |
9.25e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 459 KQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTaqlTSMTGLNATLQQRDQELASLKEQAKKEQaqmlqtmQEQEQ 538
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR---QSVIDLQTKLQEMQMERDAMADIRRRES-------QSQED 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 539 AAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAR-------EAS---LRERDTAR----------- 597
Cdd:pfam15921 143 LRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsilvdfeEASgkkIYEHDSMStmhfrslgsai 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 598 ----QQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAElsQKIGELHACIEASHQEQRQVQARVTELEAQ 673
Cdd:pfam15921 223 skilRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIE--QLISEHEVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 674 LKAEQqktterEKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAEsrsLMEQRErEQKELEQ 753
Cdd:pfam15921 301 LEIIQ------EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE---LTEART-ERDQFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 754 EKAgrkGLEARIQQ-LEEAHQAETE-ALRHELAEATASQHRAESecerliREVESRQKRFEARQQEEARYGAMfqeqLMA 831
Cdd:pfam15921 371 ESG---NLDDQLQKlLADLHKREKElSLEKEQNKRLWDRDTGNS------ITIDHLRRELDDRNMEVQRLEAL----LKA 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 832 LKGEKTGQeVQEEAVEIHSEGQPGQQQSQL-AQLHAS---LAKAIQQVQEKEV---RAQKLVDDLSA-LQEK---MAATN 900
Cdd:pfam15921 438 MKSECQGQ-MERQMAAIQGKNESLEKVSSLtAQLESTkemLRKVVEELTAKKMtleSSERTVSDLTAsLQEKeraIEATN 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 901 KEVACLKTLV-LKAGE--------------QQETASLEL-------LKEPPRAANRASDQLGEQQGRPFSSTHAAVKAME 958
Cdd:pfam15921 517 AEITKLRSRVdLKLQElqhlknegdhlrnvQTECEALKLqmaekdkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 959 REAEQMGGELERLRA------ALIKSQGQQQEERGQQEREVARLTQERGQAQADLAQEKAAKAELEMRLQNTLNEQRVEF 1032
Cdd:pfam15921 597 KEINDRRLELQEFKIlkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1033 AALQEALAHALTEKEGTDQELaklrgqeaaqRTELKELQQTLEQLKIQLVKKEkehpaggasGEDASGPGTQSETAGKTD 1112
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKL----------KMQLKSAQSELEQTRNTLKSME---------GSDGHAMKVAMGMQKQIT 737
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1113 APGPELQALRAEISKLEqqcqqqqqqvEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRelqaLR 1192
Cdd:pfam15921 738 AKRGQIDALQSKIQFLE----------EAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR----LK 803
|
810 820
....*....|....*....|....*..
gi 2214681115 1193 AKAQDHSKAEEEWKAQVARGQQEAERK 1219
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ 830
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
516-638 |
9.41e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 516 ASLKEQAKKeqaqmlqtMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEATRQDHAQQlaIVAEAR-EASLRERD 594
Cdd:PRK00409 523 ASLEELERE--------LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ--AIKEAKkEADEIIKE 592
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2214681115 595 TARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQE 638
Cdd:PRK00409 593 LRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1004-1651 |
9.52e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 9.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1004 QADLAQEKAAKAELE------MRLQNTLNEQRVEFAALQEALAHALTEKEGTDQEL-AKLRGQEAAQRTELKELQQTLEQ 1076
Cdd:pfam12128 247 QQEFNTLESAELRLShlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrDELNGELSAADAAVAKDRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1077 LKIQLVKKEKEHpAGGASGEDASGPGTQSET-------AGKTDAPGPELQALRAEISKLeqqCQQQQQQVEGLTHSLKSE 1149
Cdd:pfam12128 327 LEDQHGAFLDAD-IETAAADQEQLPSWQSELenleerlKALTGKHQDVTAKYNRRRSKI---KEQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1150 RACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAK----AQDHSKAEEEWKAQVARGQQEAERKSSLISS 1225
Cdd:pfam12128 403 REARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGelklRLNQATATPELLLQLENFDERIERAREEQEA 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1226 LEEEVSILNRQVLEKEGESKELKRlvvAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKqrVVSe 1305
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASE---ALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGK--VIS- 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1306 nsrQELASQAERAEELGQELKAWQEKFFQKEQALSALQLE--HTSTQALVSELLPAKhlcqQLQAEQAAAEKRFREELEQ 1383
Cdd:pfam12128 557 ---PELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPewAASEEELRERLDKAE----EALQSAREKQAAAEEQLVQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1384 SKQAAGGLQAELMRAQREL-----------GELGSLRQKIVEQERAAQQLRAEK-ASYAEQLSMLKKAHGLLAEENRG-- 1449
Cdd:pfam12128 630 ANGELEKASREETFARTALknarldlrrlfDEKQSEKDKKNKALAERKDSANERlNSLEAQLKQLDKKHQAWLEEQKEqk 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1450 --LGERANLGRQFLEVELDQAREKYVQELAAVRTDAETHLAEMRQEaqsTSRELevmtakyegAKVKVLEER-QRFQEER 1526
Cdd:pfam12128 710 reARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETW---YKRDL---------ASLGVDPDViAKLKREI 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1527 QKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQAskvqqqklkaFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHY 1606
Cdd:pfam12128 778 RTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR----------LATQLSNIERAISELQQQLARLIADTKLRRAKLEME 847
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 2214681115 1607 KLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERL 1651
Cdd:pfam12128 848 RKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERL 892
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
402-574 |
1.00e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 43.57 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 402 EKGEVLgdaLQLDTLKQEAAKLATDNTQLQTRvetlecergKQEAQLLAERSRFE-------DEKQQLASLIADLQSSVS 474
Cdd:pfam00529 43 KAGDVL---FQLDPTDYQAALDSAEAQLAKAQ---------AQVARLQAELDRLQaleselaISRQDYDGATAQLRAAQA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 475 NLSQAKEELEQA-SQAQGAQLTAQLTSMTGlnATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSS 553
Cdd:pfam00529 111 AVKAAQAQLAQAqIDLARRRVLAPIGGISR--ESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSG 188
|
170 180
....*....|....*....|.
gi 2214681115 554 LklkEQQLEEAAKEQEATRQD 574
Cdd:pfam00529 189 A---QLQIAEAEAELKLAKLD 206
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
850-1120 |
1.03e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.44 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 850 SEGQpgQQQSQLAQlHASLAKAIQQVQEKEVRA-----------QKLVDDLSALQEKMAATNKEVACLKTLVLKAG--EQ 916
Cdd:NF012221 1538 SESS--QQADAVSK-HAKQDDAAQNALADKERAeadrqrleqekQQQLAAISGSQSQLESTDQNALETNGQAQRDAilEE 1614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 917 QETASLELLKEPPR-AANRASDQLGEQQGRPFSsTHAAVKAMEREAEQM-------GGELERLRAALIKSQGQQQEERGQ 988
Cdd:NF012221 1615 SRAVTKELTTLAQGlDALDSQATYAGESGDQWR-NPFAGGLLDRVQEQLddakkisGKQLADAKQRHVDNQQKVKDAVAK 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 989 QEREVARLTQERGQAQADLAQekaAKAELEMRLQNTLNEQRVefAALQEALAHALTEKegtdqelAKLRGQEAAQRTELK 1068
Cdd:NF012221 1694 SEAGVAQGEQNQANAEQDIDD---AKADAEKRKDDALAKQNE--AQQAESDANAAAND-------AQSRGEQDASAAENK 1761
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1069 ELQQTLEQLKIQLVKKEKEHPAgGASGEDASGPGTQSETAGKTD-APGPELQA 1120
Cdd:NF012221 1762 ANQAQADAKGAKQDESDKPNRQ-GAAGSGLSGKAYSVEGVAEPGsHINPDSPA 1813
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
614-777 |
1.03e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.93 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 614 LQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhaCIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQ 693
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKEL--LLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 694 LQEQLRALEESLKITKGSLEEEKRRAADALKEqqcRATEMEAESRSLMEQreREQKELEQEKAgrkgleARIQQLEEAHQ 773
Cdd:PRK12705 103 LENQLEEREKALSARELELEELEKQLDNELYR---VAGLTPEQARKLLLK--LLDAELEEEKA------QRVKKIEEEAD 171
|
....
gi 2214681115 774 AETE 777
Cdd:PRK12705 172 LEAE 175
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1516-1689 |
1.08e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1516 LEERQRFQEERQKLTAQVEQLevfqREQTKQVEELSKKLTEHDQASKVQQQKLKA--FQAQRGESQQEVQRLQTQLNELQ 1593
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEY----AELQEELEELEEELEELEAELEELREELEKleKLLQLLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1594 AQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEELQKEN-KELRSEAERLGRELQQAGLKTKEAEQTCRHL 1672
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170
....*....|....*..
gi 2214681115 1673 TAQVRSLEAQVAHADQQ 1689
Cdd:COG4717 226 EEELEQLENELEAAALE 242
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
298-564 |
1.17e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 298 QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQ---GAFNDLIEEHskasqeWAEKQARLENELSTALQDKKCL 374
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNrllPRLNLLADET------LADRVEEIREQLDEAEEAKRFV 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 375 EEKneilQGKLSQLEDQATRLQESP---APEKGEVLGDALQLDTLKQ------------------EAAKLATDNT----Q 429
Cdd:PRK04863 914 QQH----GNALAQLEPIVSVLQSDPeqfEQLKQDYQQAQQTQRDAKQqafaltevvqrrahfsyeDAAEMLAKNSdlneK 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEqasqaqgaQLTAQLTSmtGLNATLQ 509
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQ--------DLGVPADS--GAEERAR 1059
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 510 QRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEA 564
Cdd:PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
610-796 |
1.22e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 610 KLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKtterekvvQ 689
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ--------L 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 690 EKAQLQEQLRALEESLKitkgSLEEEKRRAADALKEqqcratemeaesrsLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:COG1579 83 GNVRNNKEYEALQKEIE----SLKRRISDLEDEILE--------------LMERIEELEEELAELEAELAELEAELEEKK 144
|
170 180
....*....|....*....|....*..
gi 2214681115 770 EAHQAETEALRHELAEATASQHRAESE 796
Cdd:COG1579 145 AELDEELAELEAELEELEAEREELAAK 171
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
929-1344 |
1.27e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 929 PRAANRASDQLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALikSQGQQQEERGQQEREVARLTQERGQAQADLA 1008
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL--EELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1009 QEKAAKAELEMR------LQNTLNEQRVEFAALQEALAHALTEK--------EGTDQELAKLRGQEAAQRTELKELQQTL 1074
Cdd:COG4717 143 ELPERLEELEERleelreLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1075 EQLKIQLVKKEKEHPAGGASGEDASGPGTQSETAGKTDAPGPELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRA 1154
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1155 EQDK-----ALETLQGQ-LEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEE 1228
Cdd:COG4717 303 EAEElqalpALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1229 EVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVETAsnsARAAERSSALREEVQSLREEVEK--QRVVSEN 1306
Cdd:COG4717 383 DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE---EELEEELEELEEELEELEEELEElrEELAELE 459
|
410 420 430
....*....|....*....|....*....|....*...
gi 2214681115 1307 SRQELASQAERAEELGQELKAWQEKFFQKEQALSALQL 1344
Cdd:COG4717 460 AELEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1375-1679 |
1.27e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1375 KRFREELEQSKQAAGGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGLgerA 1454
Cdd:PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL---V 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1455 NLgrqfleveldQAREKYVQelaAVRTDAETHLAEMRQEAQSTSrelevmtakyEGAKVKVLEERQRFQEERQKLTAQVE 1534
Cdd:PRK11281 153 SL----------QTQPERAQ---AALYANSQRLQQIRNLLKGGK----------VGGKALRPSQRVLLQAEQALLNAQND 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1535 QlevfqreqtkQVEELskkltehdqASKVQQQKLkaFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAaehyklQMEKAk 1614
Cdd:PRK11281 210 L----------QRKSL---------EGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQEAINSKRLT------LSEKT- 261
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 1615 thydAKKQQNQKLQEQLQDLEELQKE---NKELRS---EAERLGRELQQAGLKTKE----AEQTCRHLTAQVRSL 1679
Cdd:PRK11281 262 ----VQEAQSQDEAARIQANPLVAQEleiNLQLSQrllKATEKLNTLTQQNLRVKNwldrLTQSERNIKEQISVL 332
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
460-621 |
1.30e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 460 QQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQA 539
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 540 AqgLRQQVEqlssSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQ 619
Cdd:COG1579 93 A--LQKEIE----SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
..
gi 2214681115 620 AA 621
Cdd:COG1579 167 EL 168
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
669-817 |
1.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 669 ELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQRERE- 747
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEa 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 748 -QKELEQEKAGRKGLEARIQQLE---EAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQE 817
Cdd:COG1579 94 lQKEIESLKRRISDLEDEILELMeriEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1118-1693 |
1.50e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1118 LQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKaLETLQGQLEEKARELGHNQAASASAQRELQALRAKAQD 1197
Cdd:PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1198 HSKAEEEWKAQVARGQQ---EAERKSS----LISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQK---LEERLRL 1267
Cdd:PRK04863 388 AEEEVDELKSQLADYQQaldVQQTRAIqyqqAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEllsLEQKLSV 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1268 L-----QVETASNSARAA----ERSSALREEVQSLREeVEKQRVVSENS----------RQELASQAeRAEELGQELKAW 1328
Cdd:PRK04863 468 AqaahsQFEQAYQLVRKIagevSRSEAWDVARELLRR-LREQRHLAEQLqqlrmrlselEQRLRQQQ-RAERLLAEFCKR 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1329 QEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAGGLQAELMRAQRELGE---- 1404
Cdd:PRK04863 546 LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEefed 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1405 ---LGSLRQKIVEQERAAQQ----LRAEKASYAEQLSMLKKAHGLLAEENRGLGERAN---LGRQFLEVELDQARE---K 1471
Cdd:PRK04863 626 sqdVTEYMQQLLERERELTVerdeLAARKQALDEEIERLSQPGGSEDPRLNALAERFGgvlLSEIYDDVSLEDAPYfsaL 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1472 YVQELAAV----RTDAETHLAEMR-------------QEAQSTSRELEVMtakyEGAKVKVLEERQ----RFQEE----R 1526
Cdd:PRK04863 706 YGPARHAIvvpdLSDAAEQLAGLEdcpedlyliegdpDSFDDSVFSVEEL----EKAVVVKIADRQwrysRFPEVplfgR 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1527 QKLTAQVEQLevfqREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQ------RGESQQEVQRLQTQLNELQAQLSQKE 1600
Cdd:PRK04863 782 AAREKRIEQL----RAEREELAERYATLSFDVQKLQRLHQAFSRFIGShlavafEADPEAELRQLNRRRVELERALADHE 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1601 QAAEHYKLQMEKAKTHYdakkQQNQKLQEQLQDLEE--LQKENKELRSE---AERLGRELQQAGLKTKEAEQ---TCRHL 1672
Cdd:PRK04863 858 SQEQQQRSQLEQAKEGL----SALNRLLPRLNLLADetLADRVEEIREQldeAEEAKRFVQQHGNALAQLEPivsVLQSD 933
|
650 660
....*....|....*....|.
gi 2214681115 1673 TAQVRSLEAQVAHADQQLRDL 1693
Cdd:PRK04863 934 PEQFEQLKQDYQQAQQTQRDA 954
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1311-1576 |
1.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1311 LASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELlpakhlcqqlqaeqaaaekrfREELEQSKQAAGG 1390
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL---------------------ERRIAALARRIRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1391 LQAELMRAQRELGELGSlrqkivEQERAAQQLRAEKASYAEQLSMLKKAHG-------LLAEENRGLGERANLGRQFLev 1463
Cdd:COG4942 74 LEQELAALEAELAELEK------EIAELRAELEAQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLA-- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1464 eldQAREKYVQELAAVRTDaethLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQ 1543
Cdd:COG4942 146 ---PARREQAEELRADLAE----LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
250 260 270
....*....|....*....|....*....|....*
gi 2214681115 1544 TKQVEELSKKLTEHDQASKVQQQKLKA--FQAQRG 1576
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAERTPAagFAALKG 253
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
1609-1692 |
1.56e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 43.11 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1609 QMEKAKTHYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQ 1688
Cdd:smart00435 278 SMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357
|
....
gi 2214681115 1689 QLRD 1692
Cdd:smart00435 358 QATD 361
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1514-1689 |
1.63e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1514 KVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQ 1593
Cdd:COG4372 7 KVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1594 AQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEElqkENKELRSEAERLGRELQQAGLKTKEAEQTCRHLT 1673
Cdd:COG4372 87 EQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQ---QRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
|
170
....*....|....*.
gi 2214681115 1674 AQVRSLEAQVAHADQQ 1689
Cdd:COG4372 164 EELAALEQELQALSEA 179
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1509-1657 |
1.66e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.70 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1509 EGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQASKVQQQK----LKAFQAQRGESQQEVQR 1584
Cdd:smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCdpteLDRAKEKLKKLLQEIMI 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1585 LQTQLNELQAQLSQKEQAAEhyklqmekakthydAKKQQNQKLQEQLQDLEELQKENKEL-RSEAERLGRELQQ 1657
Cdd:smart00787 223 KVKKLEELEEELQELESKIE--------------DLTNKKSELNTEIAEAEKKLEQCRGFtFKEIEKLKEQLKL 282
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
569-761 |
1.70e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.45 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 569 EATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAK---LESLQQQLQAANDARDNAQTSVTQAQQEKAELSQK 645
Cdd:pfam05262 184 EALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKqidADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 646 igelhacieashqeqrqvqARVTEleaqlKAEQQKTTEREKVVQEKAQlQEQLRALEESLKitkgsleeEKRRAADALKe 725
Cdd:pfam05262 264 -------------------ADTSS-----PKEDKQVAENQKREIEKAQ-IEIKKNDEEALK--------AKDHKAFDLK- 309
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2214681115 726 QQCRATEMEAESRSLMEQRERE------QKELEQEKAGRKGL 761
Cdd:pfam05262 310 QESKASEKEAEDKELEAQKKREpvaedlQKTKPQVEAQPTSL 351
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1185-1684 |
1.83e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1185 QRELQALRAKAQDHSKAEEEWKAQVARGQQEAER----KSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKS-Q 1259
Cdd:pfam15921 123 QMERDAMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASgK 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1260 KLEERLRLLQVETASNSARAAERSSALREEVQSLR-------EEVEKQRVVSENSRQELASQ-AERAEELGQE----LKA 1327
Cdd:pfam15921 203 KIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKgrifpveDQLEALKSESQNKIELLLQQhQDRIEQLISEheveITG 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1328 WQEKFFQKEQALSALQ--LEHTSTQALVSELLPAKHLcqqlqAEQAAAEKRFREELEQSKQAAGG----LQAELMRAQRE 1401
Cdd:pfam15921 283 LTEKASSARSQANSIQsqLEIIQEQARNQNSMYMRQL-----SDLESTVSQLRSELREAKRMYEDkieeLEKQLVLANSE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1402 LGELGSLRQKIVEQ----ERAAQQLRAEKASYAEQLSMLKKAHGLLAEENRGlgerANLGRQFLEVELDQaREKYVQELA 1477
Cdd:pfam15921 358 LTEARTERDQFSQEsgnlDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG----NSITIDHLRRELDD-RNMEVQRLE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1478 AVrtdaethLAEMRQEAQStsrELEVMTAKYEGAkvkvleerqrfQEERQKLTAQVEQLEVFQREQTKQVEELS-KKLTE 1556
Cdd:pfam15921 433 AL-------LKAMKSECQG---QMERQMAAIQGK-----------NESLEKVSSLTAQLESTKEMLRKVVEELTaKKMTL 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1557 HDQASKVQ------QQKLKAFQAQRGESQQEVQRLQTQLNELQaQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQ 1630
Cdd:pfam15921 492 ESSERTVSdltaslQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQ 570
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2214681115 1631 LQDLEELQKENKE----LRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVA 1684
Cdd:pfam15921 571 IENMTQLVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVS 628
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1166-1419 |
1.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1166 QLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESK 1245
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1246 ELKRLVVAESEKSQKLEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRvvseNSRQELASQAERAEELGQEL 1325
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1326 KAWQEKFFQKEQALSALQLEHTSTQAlvsellpakhlcqqlqaeqaaaekrfreELEQSKQAAGGLQAELMRAQREL-GE 1404
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLA----------------------------RLEKELAELAAELAELQQEAEELeAL 228
|
250
....*....|....*
gi 2214681115 1405 LGSLRQKIVEQERAA 1419
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
267-491 |
1.87e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 267 AASSQEPSELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEH 346
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 347 SKASQEWAEKQARLENELSTAL--------------QDKKCLEEKNEILQGKLSQLEDQATRLQEspapEKGEVLGDALQ 412
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRA----DLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 413 LDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQG 491
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
669-817 |
1.89e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 42.66 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 669 ELEAQLKAEQQKTTEREKVVQEKAQLQEqlrALEESLKITKGSLEEEKRraadALKEQQCRATEMEAESRSLMEQREREQ 748
Cdd:pfam02841 159 KLEAKYNQVPRKGVKAEEVLQEFLQSKE---AVEEAILQTDQALTAKEK----AIEAERAKAEAAEAEQELLREKQKEEE 231
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 749 KELEQEKagrKGLEARIQQLEEAHQAETEALRHELaEATASQHRAESecERLIRevESRQKRFEARQQE 817
Cdd:pfam02841 232 QMMEAQE---RSYQEHVKQLIEKMEAEREQLLAEQ-ERMLEHKLQEQ--EELLK--EGFKTEAESLQKE 292
|
|
| MreC |
COG1792 |
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ... |
1615-1676 |
1.91e-03 |
|
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];
Pssm-ID: 441397 Cd Length: 282 Bit Score: 42.56 E-value: 1.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 1615 THYDAKKQQNQKLQEQLQDLEELQKENKELRSEAERLgRELqqagLKTKEAEQTcRHLTAQV 1676
Cdd:COG1792 68 RSLFNLREENERLKEENAELRAELQRLEELEAENARL-REL----LDLKERLDY-KFVAAEV 123
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
612-790 |
1.94e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 612 ESLQQQLQAANDARD------NAQTSVTQAQ---QEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTT 682
Cdd:PRK11281 39 ADVQAQLDALNKQKLleaedkLVQQDLEQTLallDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 683 EREKVVQEKAQLQEQLRALEE---------SLKITKGSLEEekrRAADALKEQQCRATE--------------------- 732
Cdd:PRK11281 119 STLSLRQLESRLAQTLDQLQNaqndlaeynSQLVSLQTQPE---RAQAALYANSQRLQQirnllkggkvggkalrpsqrv 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 733 -MEAESRSLMEQREREQKELE-----QE--KAGRKGLEARIQQLEEAHQAETEAL---RHELAEATASQ 790
Cdd:PRK11281 196 lLQAEQALLNAQNDLQRKSLEgntqlQDllQKQRDYLTARIQRLEHQLQLLQEAInskRLTLSEKTVQE 264
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
1510-1648 |
2.03e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 43.11 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1510 GAKVKVLEERQRFQEERQKLTAQVEQL-EVFQREQTKQvEELSKKLtehdqaskvqQQKLKAFQAQ-------RGESQQE 1581
Cdd:pfam10168 568 LQKEQQLQELQSLEEERKSLSERAEKLaEKYEEIKDKQ-EKLMRRC----------KKVLQRLNSQlpvlsdaEREMKKE 636
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 1582 VQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDA---------KKQQNQKLQEQLQDLEELQKENKELRSEA 1648
Cdd:pfam10168 637 LETINEQLKHLANAIKQAKKKMNYQRYQIAKSQSIRKKsslslsekqRKTIKEILKQLGSEIDELIKQVKDINKHV 712
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1407-1614 |
2.04e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1407 SLRQKIVEQERAAQQLRAEKASYAEQL-------SMLKKAHGLLAEENRGLGERANLGRqfLEVELDQAREKYvQELAAV 1479
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELeeaeaalEEFRQKNGLVDLSEEAKLLLQQLSE--LESQLAEARAEL-AEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1480 RTDAETHLAEMRQEAQ--STSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEVFQREQTKQVEELSKKLTEH 1557
Cdd:COG3206 242 LAALRAQLGSGPDALPelLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1558 DQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAK 1614
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
1566-1754 |
2.11e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 43.17 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1566 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQaaehyKLQMEKAKThydakkqqnQKLQEQLQDLeeLQKENKELR 1645
Cdd:PRK06975 357 QRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDG-----KLADAQSAQ---------QALEQQYQDL--SRNRDDWMI 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1646 SEAERLgreLQQAGLKTkeaeqtcrHLTAQVRSLEAQVAHADQQLRDLGKFQVAT---------DALKSrepqvKPQLDL 1716
Cdd:PRK06975 421 AEVEQM---LSSASQQL--------QLTGNVQLALIALQNADARLATSDSPQAVAvrkaiaqdiERLKA-----APSADL 484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1717 S------------IDSLDLSLEEGTPCSVASKLPRTQPDGTSVPGEPASP 1754
Cdd:PRK06975 485 TglaiklddaiakIDALPLSGEALPPHATMAAAPAAAAAAAAAAAAAGEP 534
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
609-740 |
2.12e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.40 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 609 AKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELhacieashqeqrqvQARVTELEAQLKAEQQKTTEREKvv 688
Cdd:PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAEL--------------EEKQQELEAQLEQLQEKAAETSQ-- 212
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2214681115 689 QEKAQLQEQLRALEESLKITkgslEEEKRRAADalkeQQCRATEMEAESRSL 740
Cdd:PRK11448 213 ERKQKRKEITDQAAKRLELS----EEETRILID----QQLRKAGWEADSKTL 256
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1467-1624 |
2.19e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1467 QAREKYVQELAAVRTDAETHLAEMRQEAQSTSRELevMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEvfqrEQTKQ 1546
Cdd:PRK12705 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKEL--LLRERNQQRQEARREREELQREEERLVQKEEQLD----ARAEK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1547 VEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRL-QTQLNELQAQLSQ---KEQAAEHYKLQMEKAKTHYDAKKQ 1622
Cdd:PRK12705 100 LDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLtPEQARKLLLKLLDaelEEEKAQRVKKIEEEADLEAERKAQ 179
|
..
gi 2214681115 1623 QN 1624
Cdd:PRK12705 180 NI 181
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
412-717 |
2.21e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQaQG 491
Cdd:COG4372 32 QLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE-EA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 AQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLklkeQQLEEAAKEQEAT 571
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL----QALSEAEAEQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHA 651
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 652 CIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKR 717
Cdd:COG4372 267 ILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELAL 332
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1117-1341 |
2.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1117 ELQALRAEISKLEQQCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQ 1196
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1197 DH----SKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLRLLQVET 1272
Cdd:COG4942 108 ELlralYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 1273 ASNSARAAERSSALREEVQSLREEvekqrvvsensRQELASQAERAEELGQELKAWQEKFFQKEQALSA 1341
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAEL-----------AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1261-1604 |
2.48e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1261 LEERLRLLQVETASNSARAAERSSALREEVQSLREEVEKQRVVSEnSRQELASQAERAEELGQELKAWQEKFFQKEQALS 1340
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAE-LKEELRQSREKHEELEEKYKELSASSEELSEEKD 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1341 ALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAAG-------GLQAELMRAQREL----GELGSLR 1409
Cdd:pfam07888 119 ALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKeeeaerkQLQAKLQQTEEELrslsKEFQELR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1410 QKIVEQERAAQQLRAEKASYAEQLSMLKK---AHGLLAEENRGLGERANLGRQFLEveldqAREKYVQELAAVRTDAETH 1486
Cdd:pfam07888 199 NSLAQRDTQVLQLQDTITTLTQKLTTAHRkeaENEALLEELRSLQERLNASERKVE-----GLGEELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1487 LAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQ-------EERQKLTAQVEQLEVFQREQTKQVEELSKKLTEHDQ 1559
Cdd:pfam07888 274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQqsaeadkDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2214681115 1560 ASKVQ----QQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAE 1604
Cdd:pfam07888 354 CNRVQlsesRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLE 402
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
632-771 |
2.71e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 632 VTQAQQEKAELSQKIGELhacIEASHQEQRQVQARVTELEaQLKAEQQKTteREKVVQEKAQLQEQLRALeeslkitkgs 711
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNEL---IASLEELERELEQKAEEAE-ALLKEAEKL--KEELEEKKEKLQEEEDKL---------- 567
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 712 LEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAgRKGLEARIQQLEEA 771
Cdd:PRK00409 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEA-RKRLNKANEKKEKK 626
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
576-703 |
2.77e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 42.34 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 576 AQQLAIVAEAREASLRERDTARQQLETVEkekdAKLESLQQQLQAANDARDNAQT-----SVTQAQQEKAElsqkigelh 650
Cdd:COG1566 88 AEAQLAAAEAQLARLEAELGAEAEIAAAE----AQLAAAQAQLDLAQRELERYQAlykkgAVSQQELDEAR--------- 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 651 acieashQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEE 703
Cdd:COG1566 155 -------AALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAALAQ 200
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
938-1657 |
2.81e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 938 QLGEQQGRPFSSTHAAVKAMEREAEQMGGELERLRAALIKSQGQQQEERGQQEREVARLTQERG--QAQADLAQEKAAKA 1015
Cdd:TIGR00606 287 ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGrlQLQADRHQEHIRAR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1016 ELEMRLQNTLNE----QRVEFAALQEALAHALTEKEGTD------QELAKLRGQEAAQ-------RTELKELQQTLEQLK 1078
Cdd:TIGR00606 367 DSLIQSLATRLEldgfERGPFSERQIKNFHTLVIERQEDeaktaaQLCADLQSKERLKqeqadeiRDEKKGLGRTIELKK 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1079 IQLVKKEKEHPAGGASGEDASGpgtQSETAGKTDApgpELQALRAEISKLEQQCQqqqqqVEGLTHSLKSERACRAEQDK 1158
Cdd:TIGR00606 447 EILEKKQEELKFVIKELQQLEG---SSDRILELDQ---ELRKAERELSKAEKNSL-----TETLKKEVKSLQNEKADLDR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1159 ALETLQGQLEEKARELGHNQAASASAQRELQALRAKAQDHSKAEEEWKAQVA------RGQQEAERKSSLISSLEEEVSI 1232
Cdd:TIGR00606 516 KLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1233 LNRQVLEKEGE----SKELKRLVVAESEKSQKLEERLRLLQVEtaSNSARAAERSSALREEVQSLREEVEKQRVVSENSR 1308
Cdd:TIGR00606 596 LNKELASLEQNknhiNNELESKEEQLSSYEDKLFDVCGSQDEE--SDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1309 QELASQAERAEELGQELKAWQEKFFQKEQALSALQLEHTSTQALVSELLPAKHLCQQLQAEQAAAEKRFREELEQSKQAA 1388
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1389 GGLQAELMRAQRELGELGSLRQKIVEQERAAQQLRAEkASYAEQLSMLKKAHGLLAEENRGLGERANLGRQFleVELDQA 1468
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQE 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1469 REKYVQELAAVRTDAEThLAEMRQEAQSTSRELEVMTAKYEGAKVKV---LEERQRFQEERQKLTAQVEQL--------- 1536
Cdd:TIGR00606 831 KQEKQHELDTVVSKIEL-NRKLIQDQQEQIQHLKSKTNELKSEKLQIgtnLQRRQQFEEQLVELSTEVQSLireikdake 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1537 ------EVFQREQTKQVEELSKKLTEHDQAS-KVQQQKLKAFQ-----------AQRGESQQEVQRlQTQLNELQAQLSQ 1598
Cdd:TIGR00606 910 qdspleTFLEKDQQEKEELISSKETSNKKAQdKVNDIKEKVKNihgymkdienkIQDGKDDYLKQK-ETELNTVNAQLEE 988
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 1599 KEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQdLEELQKENKELRSEAERLGRELQQ 1657
Cdd:TIGR00606 989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQ 1046
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
352-863 |
2.97e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 42.37 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 352 EWAEKQARLENELSTALQDKKCLEEKNEILQGKLSQLEDqatrLQESPAPEKGEVLGDALQLDTLKQEAAKLATDNTQLQ 431
Cdd:pfam05622 11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLES----GDDSGTPGGKKYLLLQKQLEQLQEENFRLETARDDYR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 432 TRVETLECE----------------------------------RGKQEAQLLAERSRFEDE---KQQLASLIADLQSSVS 474
Cdd:pfam05622 87 IKCEELEKEvlelqhrneeltslaeeaqalkdemdilressdkVKKLEATVETYKKKLEDLgdlRRQVKLLEERNAEYMQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 475 NLSQAKEELEQASQAQGaQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQ---AAQGLRQQVEQLS 551
Cdd:pfam05622 167 RTLQLEEELKKANALRG-QLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLEALQKEKERliiERDTLRETNEELR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 552 -SSLKLKEQQLEEAAKEQEATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQT 630
Cdd:pfam05622 246 cAQLQQAELSQADALLSPSSDPGDNLAAEIMPAEIREKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELET 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 631 SVTQAQQEKAELSQKIGELhacieashQEQRQVQARVTELEAQLKaeqqktterekvvQEKAQLQEQLRALEESLKITKG 710
Cdd:pfam05622 326 QNRLANQRILELQQQVEEL--------QKALQEQGSKAEDSSLLK-------------QKLEEHLEKLHEAQSELQKKKE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 711 SLEEekrRAADALKEQQCRATEMEAESRS----LMEQREREQKELEQEKAGRKGLEARIQQleeAHQAETEALRHELAEA 786
Cdd:pfam05622 385 QIEE---LEPKQDSNLAQKIDELQEALRKkdedMKAMEERYKKYVEKAKSVIKTLDPKQNP---ASPPEIQALKNQLLEK 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 787 TASQHRAESECE--RLIREVEsrqkrfearqqeearygamfqEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQ 863
Cdd:pfam05622 459 DKKIEHLERDFEksKLQREQE---------------------EKLIVTAWYNMGMALHRKAIEERLAGLSSPGQSFLAR 516
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1377-1682 |
2.99e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1377 FREELEQSKQAAGGLQAELMRAQRELGELgSLRQKIVEQE----RAAQQLRAEKASYAEQLSMLKKAHGLL---AEENRG 1449
Cdd:PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAEL-NEAESDLEQDyqaaSDHLNLVQTALRQQEKIERYQADLEELeerLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1450 LGERANLGRQFLEVELDQAREKYVQ---ELAAVRT--DAETHLAEMRQEAQSTSRELEVMTAKYEGAKVKVLEERQRFQE 1524
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEEEVDElksQLADYQQalDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQA 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1525 ERQKLTAQVEQLEvfQR--------EQTKQVEELSKKL---TEHDQASKVQQQKLKAFQAQRGESQQeVQRLQTQLNELQ 1593
Cdd:PRK04863 450 KEQEATEELLSLE--QKlsvaqaahSQFEQAYQLVRKIageVSRSEAWDVARELLRRLREQRHLAEQ-LQQLRMRLSELE 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1594 aQLSQKEQAAEHyklqmekakthydAKKQQNQKLQEQLQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLT 1673
Cdd:PRK04863 527 -QRLRQQQRAER-------------LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
....*....
gi 2214681115 1674 AQVRSLEAQ 1682
Cdd:PRK04863 593 ARIQRLAAR 601
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
282-655 |
3.05e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 282 KNESLTVRLHETLKQ----CQNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQGAFNDLIEEHSKASQEWAEKQ 357
Cdd:pfam07888 28 RAELLQNRLEECLQEraelLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 358 aRLENELStalQDKKCLEEKNEILQGKLSQLEDQATRLQEspapekgEVLGDALQLDTLKQEAAKLATDNTQLQTRVETL 437
Cdd:pfam07888 108 -ASSEELS---EEKDALLAQRAAHEARIRELEEDIKTLTQ-------RVLERETELERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 438 ECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQgAQLTAQLTSMTGLNATLQQRDQELAS 517
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKE-AENEALLEELRSLQERLNASERKVEG 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 518 LKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLS-SSLKLKEQQlEEAAKEQEATRQ------DHAQQLAIVAEAREASL 590
Cdd:pfam07888 256 LGEELSSMAAQRDRTQAELHQARLQAAQLTLQLAdASLALREGR-ARWAQERETLQQsaeadkDRIEKLSAELQRLEERL 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 591 RERDTARQQLET-VEKEKDAKLESL---QQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEA 655
Cdd:pfam07888 335 QEERMEREKLEVeLGREKDCNRVQLsesRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLET 403
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
615-789 |
3.22e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 615 QQQLQAanDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQE--QRQVQARVTELEAQLKAEQQKTTEREKVVQE-- 690
Cdd:PRK09510 67 QQQQQK--SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKErlAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAaa 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 691 -KAQLQEQLRALEESLKITKgslEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLE 769
Cdd:PRK09510 145 aKAKAEAEAKRAAAAAKKAA---AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|
gi 2214681115 770 EAHQAETEALRHELAEATAS 789
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKA 241
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
566-771 |
3.27e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 566 KEQEATRQDHAQQLAIVAEAREASLRERDTARQQ-LETVEKEKDAKLESLQQQLQAANDARdnaqtsvtQAQQEKAELSQ 644
Cdd:PRK09510 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQErLKQLEKERLAAQEQKKQAEEAAKQAA--------LKQKQAEEAAA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 645 KIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKAQLQEQLRALEESLKitKGSLEEEKRRAADALK 724
Cdd:PRK09510 140 KAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK--KAEAEAKKKAAAEAKK 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2214681115 725 EQqcratemEAESRSLMEQREREQKELEQEKAGRKGLEARIQQLEEA 771
Cdd:PRK09510 218 KA-------AAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
621-823 |
3.37e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 621 ANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQL-KAEQQKTTEREKVVQEKAQLQEQLR 699
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 700 AL-EESLKITKGSLEEEKRRAADALKEQQCRATEMEAEsRSLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEA 778
Cdd:COG3883 94 ALyRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2214681115 779 LRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGA 823
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1550-1698 |
3.53e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1550 LSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQE 1629
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1630 QL----QDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRDLGKFQV 1698
Cdd:COG4372 109 EAeelqEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEA 181
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1464-1667 |
3.76e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1464 ELDQAREKYVQELAAVRTDAETHLAEMRQE-----AQSTSRELEVMTAKYEGAKVKVLEERQRFQEERQKLTAQVEQLEV 1538
Cdd:pfam17380 320 EAEKARQAEMDRQAAIYAEQERMAMERERElerirQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELE 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1539 FQREQTKQVEELSKKLTEHDQAS---KVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQ-----LSQKEQAAEHYKLQM 1610
Cdd:pfam17380 400 AARKVKILEEERQRKIQQQKVEMeqiRAEQEEARQREVRRLEEERAREMERVRLEEQERQqqverLRQQEEERKRKKLEL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2214681115 1611 EKAKTHYDAKKQQNQKLQEqlQDLEELQKENKELRSEAERLGRELQQAGLKTKEAEQ 1667
Cdd:pfam17380 480 EKEKRDRKRAEEQRRKILE--KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEER 534
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
412-635 |
3.77e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 412 QLDTLKQEAAKLATDNTQLQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQg 491
Cdd:COG3883 38 ELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLLGSESFSD- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 492 aqLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLSSSLKLKEQQLEEAAKEQEAT 571
Cdd:COG3883 117 --FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 572 RQDHAQQLAIVAEAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQA 635
Cdd:COG3883 195 EAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1566-1692 |
3.98e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1566 QKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQ------DLEELQK 1639
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnkEYEALQK 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2214681115 1640 ENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSLEAQVAHADQQLRD 1692
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
456-564 |
4.03e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.25 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 456 EDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKeqaqmlqtmQE 535
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE---------TS 211
|
90 100 110
....*....|....*....|....*....|....*..
gi 2214681115 536 QEQAAQgLRQQVEQLSSSLKLKE--------QQLEEA 564
Cdd:PRK11448 212 QERKQK-RKEITDQAAKRLELSEeetrilidQQLRKA 247
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1444-1714 |
4.08e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1444 AEENRGLGERANLGRQflevELDQAREKyvqelaavRTDAETHLAEMRQEAQSTSRELEVMTAKYEGAKvkvlEERQRFQ 1523
Cdd:PRK04863 278 ANERRVHLEEALELRR----ELYTSRRQ--------LAAEQYRLVEMARELAELNEAESDLEQDYQAAS----DHLNLVQ 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1524 EERqkltAQVEQLEVFQREqtkqVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQKEQAA 1603
Cdd:PRK04863 342 TAL----RQQEKIERYQAD----LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1604 ehykLQMEKAKTHYDAKKQQNQK---LQEQLQD-LEELQKENKELRSEAERLGRELQQAGLKTKEAEQTCRHLTAQVRSL 1679
Cdd:PRK04863 414 ----IQYQQAVQALERAKQLCGLpdlTADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV 489
|
250 260 270
....*....|....*....|....*....|....*..
gi 2214681115 1680 EAQVAH--ADQQLRDLGKFQvatdALKSREPQVKPQL 1714
Cdd:PRK04863 490 SRSEAWdvARELLRRLREQR----HLAEQLQQLRMRL 522
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
584-823 |
4.37e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 584 EAREASLRERDTARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV 663
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 664 QARVTELEAQLKAEQ-----QKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESR 738
Cdd:COG3883 99 GGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 739 SLMEQREREQKELEQEKAGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEE 818
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258
|
....*
gi 2214681115 819 ARYGA 823
Cdd:COG3883 259 AGSAG 263
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
473-580 |
4.55e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 41.64 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 473 VSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASlkeqAKKEQAQMLQTM-QEQEQAAQGLRQQVEQLS 551
Cdd:TIGR04320 249 IPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAA----AQAALATAQKELaNAQAQALQTAQNNLATAQ 324
|
90 100
....*....|....*....|....*....
gi 2214681115 552 SSLKLKEQQLEEAAKEQEATRQDHAQQLA 580
Cdd:TIGR04320 325 AALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1012-1264 |
4.55e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1012 AAKAELEMRLQNTLNEQRVEFAALQEALAHALTEKEGTDQELAKLRGQEAAQRTELKELQQTLEQLKIQLVKKEKEhpag 1091
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1092 gasgedasgpgtqsetagkTDAPGPELQALRAEISKL--EQQCQQQQQQVEGLTHSLKSERACRAEQdkALETLQGQLEE 1169
Cdd:COG4942 92 -------------------IAELRAELEAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAVRRLQ--YLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1170 KARELGHNQAASASAQRELQALRAKAQdhsKAEEEWKAQVARGQQEAERKSSLISSLEEEVSILNRQVLEKEGESKELKR 1249
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELE---ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250
....*....|....*
gi 2214681115 1250 LVVAESEKSQKLEER 1264
Cdd:COG4942 228 LIARLEAEAAAAAER 242
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1526-1667 |
4.81e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1526 RQKLTAQVEQLEVFQREQTKQVEELSK-KLTEhdqaSKVQQQKLKA-FQAQRGESQQEVQRLQTQLNELQAQLSQKEQAA 1603
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKeALLE----AKEEIHKLRNeFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1604 EHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEelQKENKELrseaERLgrelqqAGLKTKEAEQ 1667
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELI--EEQLQEL----ERI------SGLTAEEAKE 157
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
486-823 |
4.87e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 486 ASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQAKKEQAQMLQT--MQEQEQAAQGLRQQVeqlssslklkeQQLEE 563
Cdd:PRK04863 783 AREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVafEADPEAELRQLNRRR-----------VELER 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 564 AAKEQEATRQDHAQQLaivaeareaslrerDTARQQLETVEK-EKDAKL---ESLQQQLQAANDARDNAQTSVTQAQQEK 639
Cdd:PRK04863 852 ALADHESQEQQQRSQL--------------EQAKEGLSALNRlLPRLNLladETLADRVEEIREQLDEAEEAKRFVQQHG 917
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 640 AELSQkIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQEKA--------QLQEQLRALEESLKITKGS 711
Cdd:PRK04863 918 NALAQ-LEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaEMLAKNSDLNEKLRQRLEQ 996
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 712 LEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQ---KELEQEKA-----GRKGLEARIQQLEEAHQAETEALRHEL 783
Cdd:PRK04863 997 AEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRqmlQELKQELQdlgvpADSGAEERARARRDELHARLSANRSRR 1076
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2214681115 784 AEATASQHRAESECERLIREVESRQKrfEARQQEEARYGA 823
Cdd:PRK04863 1077 NQLEKQLTFCEAEMDNLTKKLRKLER--DYHEMREQVVNA 1114
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
601-756 |
5.76e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.93 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 601 ETVEKEKDAKLESLQQQLQAANDARDNAQTSvtQAQQEKAELSQkigelhaciEASHQEQRQVqarvteLEAQLKAEQQK 680
Cdd:PTZ00491 636 QSVEPVDERTRDSLQKSVQLAIEITTKSQEA--AARHQAELLEQ---------EARGRLERQK------MHDKAKAEEQR 698
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 681 TTEREkVVQEKAQLQEQLRALEESLKITKGSLEEEkrRAADALKEQQCRATEMEAESRSLMEQREREQkELEQEKA 756
Cdd:PTZ00491 699 TKLLE-LQAESAAVESSGQSRAEALAEAEARLIEA--EAEVEQAELRAKALRIEAEAELEKLRKRQEL-ELEYEQA 770
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
443-780 |
5.77e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 443 KQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQLTSMTGLNATLQQRDQELASLKEQA 522
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 523 KKEQAQMLQTMQEQEQAaqglRQQVEQLSSSLKLKEQQLEEAAKEQEAtRQDHAQQLAIVAEAREASLRERDTARQQLET 602
Cdd:COG4372 83 EELNEQLQAAQAELAQA----QEELESLQEEAEELQEELEELQKERQD-LEQQRKQLEAQIAELQSEIAEREEELKELEE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 603 VEKEKDAKLESLQQQLQAANDARDNAQ--TSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQK 680
Cdd:COG4372 158 QLESLQEELAALEQELQALSEAEAEQAldELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 681 TTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEKAGRKG 760
Cdd:COG4372 238 LLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDAL 317
|
330 340
....*....|....*....|
gi 2214681115 761 LEARIQQLEEAHQAETEALR 780
Cdd:COG4372 318 LAALLELAKKLELALAILLA 337
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1526-1658 |
6.12e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1526 RQKLTAQVEQLEvfqrEQTKQVEELSKKLTEHDQASKVQQQKLKAFQAQRGESQQEVQRLQTQLNELQAQLSQ------- 1598
Cdd:PRK09039 45 SREISGKDSALD----RLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAaegrage 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214681115 1599 KEQAAEHYKLQMEKAKTHYDAKKQQNQKLQEQLQDLEEL----QKENKELRSEAERLGRELQQA 1658
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAldasEKRDRESQAKIADLGRRLNVA 184
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
274-816 |
6.49e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 274 SELEELRGKNESLTVRLHETLKQCQNLKTEKSQMDRKISQLSEENGDLSfkvrefaNHLQQLQGAFNDLieehskASQEw 353
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM-------DDYNNLKSALNEL------SSLE- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 354 aEKQARLENELSTALQDKKCLEEKNEilqgKLSQLEDQATRLQESPAPEKGEVLGDAL----QLDTLKQEAAKLATDNTQ 429
Cdd:PRK01156 249 -DMKNRYESEIKTAESDLSMELEKNN----YYKELEERHMKIINDPVYKNRNYINDYFkyknDIENKKQILSNIDAEINK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 430 LQTRVETLEcERGKQEAQLLAERSRFEDEKQQLASLIA---DLQSSVSNLSQAKEELEQASQAQ---GAQLTAQLTSMTG 503
Cdd:PRK01156 324 YHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGyemDYNSYLKSIESLKKKIEEYSKNIermSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 504 LNATLQQRDQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQQVEQLS---------------SSLKLKEQQLEEAAKEQ 568
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeKSNHIINHYNEKKSRLE 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 569 EATRQDHAQQLAIVAEAREASLRERDTARQQLETVEKEkDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAEL-SQKIG 647
Cdd:PRK01156 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINE-YNKIESARADLEDIKIKINELKDKHDKYEEIKNRYkSLKLE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 648 ELhaciEASHQEQRQVQARVTELEaqLKAEQQKTTEREKVVQEkaqLQEQLRALEESLKITKGSLEEEKRRAADALKEQQ 727
Cdd:PRK01156 562 DL----DSKRTSWLNALAVISLID--IETNRSRSNEIKKQLND---LESRLQEIEIGFPDDKSYIDKSIREIENEANNLN 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 728 CRATEMEAESRsLMEQREREQKELEQEKAGRKGLEARIQQLE-EAHQAETE--ALRHELAEATASQHRAESECERLIREV 804
Cdd:PRK01156 633 NKYNEIQENKI-LIEKLRGKIDNYKKQIAEIDSIIPDLKEITsRINDIEDNlkKSRKALDDAKANRARLESTIEILRTRI 711
|
570
....*....|..
gi 2214681115 805 ESRQKRFEARQQ 816
Cdd:PRK01156 712 NELSDRINDINE 723
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
682-804 |
8.48e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 682 TEREKVVQEKAQLQEQLRALEeslkITKGSLEEEKRRAADAlkeqqcRATEMEAESRSLMEQREREQKELEQEKAGRKGL 761
Cdd:COG0542 404 MEIDSKPEELDELERRLEQLE----IEKEALKKEQDEASFE------RLAELRDELAELEEELEALKARWEAEKELIEEI 473
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2214681115 762 EARIQQLEEAHQaETEALRHELAEATAsqhrAESECERLIREV 804
Cdd:COG0542 474 QELKEELEQRYG-KIPELEKELAELEE----ELAELAPLLREE 511
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
426-572 |
8.67e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.80 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 426 DNTQLQTRVETLECERGKQEAQLLAERSRfEDEKQQLASLIADLQSSVSNLSQAKEELEQASQAQGAQLTAQltsmtgln 505
Cdd:COG1566 77 DPTDLQAALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQ-------- 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2214681115 506 atlqqrdQELASLKEQAKKEQAQMLQTMQEQEQAAQGLRQ--QVEQLSSSLKLKEQQLEEAAKEQEATR 572
Cdd:COG1566 148 -------QELDEARAALDAAQAQLEAAQAQLAQAQAGLREeeELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
636-918 |
8.71e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 636 QQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLKAEQQKTTEREKVVQE-KAQLQEQLRALEESLKITKgsLEE 714
Cdd:pfam17380 302 RQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEeRKRELERIRQEEIAMEISR--MRE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 715 EKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQ----EKAGRKGLEAR---IQQLEEAHQAETEALRHELAEAT 787
Cdd:pfam17380 380 LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQkvemEQIRAEQEEARqreVRRLEEERAREMERVRLEEQERQ 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 788 ASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGEKTGQEVQEEAVEIHSEGQPGQQQSQLAQLHAS 867
Cdd:pfam17380 460 QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAE 539
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2214681115 868 LAKAIQQVQEKEVRAQKLVDDLSALQEKMAATNKEVACLKTLVLKAGEQQE 918
Cdd:pfam17380 540 EERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
588-892 |
9.06e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.17 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 588 ASLRERDTArQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQV--QA 665
Cdd:pfam05667 206 PSLLERNAA-ELAAAQEWEEEWNSQGLASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELlsSF 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 666 RVTELEAQLKAEQQKTTEREKVvqekaQLQEQLRALEESLKITKGSLEEekrraadaLKEQQcratemEAESRSLMEQRE 745
Cdd:pfam05667 285 SGSSTTDTGLTKGSRFTHTEKL-----QFTNEAPAATSSPPTKVETEEE--------LQQQR------EEELEELQEQLE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 746 REQKELEQEKAGRKGLEARIQQLEEaHQAETEALRHELAEATASQHR-------AESECERLIREVESRQKRFE--ARQQ 816
Cdd:pfam05667 346 DLESSIQELEKEIKKLESSIKQVEE-ELEELKEQNEELEKQYKVKKKtldllpdAEENIAKLQALVDASAQRLVelAGQW 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2214681115 817 EEARygAMFQEQLMALKGEKTGQEVQEEaveihsegqpgQQQSQLAQLHASLAKAIQQVQEKEVRAQKLVDDLSAL 892
Cdd:pfam05667 425 EKHR--VPLIEEYRALKEAKSNKEDESQ-----------RKLEEIKELREKIKEVAEEAKQKEELYKQLVAEYERL 487
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1034-1343 |
9.15e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1034 ALQEALAHALTEKEGTDQ--ELAKLRGQEAAQRTELKELQQTLEQL-KIQLVKKEKEHPAGGASGEDASgpgTQSETAGK 1110
Cdd:PRK11281 27 ARAASNGDLPTEADVQAQldALNKQKLLEAEDKLVQQDLEQTLALLdKIDRQKEETEQLKQQLAQAPAK---LRQAQAEL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1111 TDAPGPELQALRAEISKLEqqCQQQQQQVEGLTHSLKSERACRAEQDKALETLQGQLEEkarelghNQAASASAQRELQA 1190
Cdd:PRK11281 104 EALKDDNDEETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER-------AQAALYANSQRLQQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1191 LRAKAQDhSKAEEEWKAQVARGQQEAErksslISSLEEEVSiLNRQVLEKEGESKELKRLVVAE-SEKSQKLEERLRLLQ 1269
Cdd:PRK11281 175 IRNLLKG-GKVGGKALRPSQRVLLQAE-----QALLNAQND-LQRKSLEGNTQLQDLLQKQRDYlTARIQRLEHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 1270 veTASNSARAAErSSALREEVQSLREEVEKQR---VVSENSR-----QELASQAERAEELGQE---LKAWQEKFFQKEQA 1338
Cdd:PRK11281 248 --EAINSKRLTL-SEKTVQEAQSQDEAARIQAnplVAQELEInlqlsQRLLKATEKLNTLTQQnlrVKNWLDRLTQSERN 324
|
....*....
gi 2214681115 1339 L----SALQ 1343
Cdd:PRK11281 325 IkeqiSVLK 333
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
597-785 |
9.24e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 597 RQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEK----------AELSQKIGELHA---------CIEASH 657
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQqvidnfpklsAELRQQLNNERDeprsvppnmSTDALE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 658 QEQRQVQARVTELEAQLKAEQQKTTE-REKVVQEKAQLQEQLRALEE------SLKITKGSLEEEKRRAADA-LKEQQCR 729
Cdd:PRK10929 109 QEILQVSSQLLEKSRQAQQEQDRAREiSDSLSQLPQQQTEARRQLNEierrlqTLGTPNTPLAQAQLTALQAeSAALKAL 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2214681115 730 ATEMEAESRSLMEQRE--REQKELEQEKAGRkgLEARIQ----QLEEAHQAETE-ALRH--ELAE 785
Cdd:PRK10929 189 VDELELAQLSANNRQElaRLRSELAKKRSQQ--LDAYLQalrnQLNSQRQREAErALESteLLAE 251
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
596-848 |
9.37e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 596 ARQQLETVEKEKDAKLESLQQQLQAANDARDNAQTSVTQAQQEKAELSQKIGELHACIEASHQEQRQVQARVTELEAQLK 675
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 676 AEQQKTTEREKVVQEKAQLQEQLRALEESLKITKGSLEEEKRRAADALKEQQCRATEMEAESRSLMEQREREQKELEQEK 755
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 756 AGRKGLEARIQQLEEAHQAETEALRHELAEATASQHRAESECERLIREVESRQKRFEARQQEEARYGAMFQEQLMALKGE 835
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250
|
250
....*....|...
gi 2214681115 836 KTGQEVQEEAVEI 848
Cdd:COG4372 251 LLEEVILKEIEEL 263
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
298-549 |
9.98e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 298 QNLKTEKSQMDRKISQLSEENGDLSFKVREFANHLQQLQ---GAFNDLIEEHSkasqewAEKQARLENELSTALQDKKCL 374
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNkllPQANLLADETL------ADRLEELREELDAAQEAQAFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 375 EEKNEilqgKLSQLEDQATRLQESPAPE---KGEVLGDALQLDTLKQ------------------EAAKLATDNT----Q 429
Cdd:COG3096 913 QQHGK----ALAQLEPLVAVLQSDPEQFeqlQADYLQAKEQQRRLKQqifalsevvqrrphfsyeDAVGLLGENSdlneK 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214681115 430 LQTRVETLECERGKQEAQLLAERSRFEDEKQQLASLIADLQSSVSNLSQAKEELEQ--ASQAQGAQLTAQlTSMTGLNAT 507
Cdd:COG3096 989 LRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgVQADAEAEERAR-IRRDELHEE 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2214681115 508 LQQRDQELASLKEQ---AKKEQAQMLQTMQEQEQAAQGLRQQVEQ 549
Cdd:COG3096 1068 LSQNRSRRSQLEKQltrCEAEMDSLQKRLRKAERDYKQEREQVVQ 1112
|
|
|