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Conserved domains on  [gi|1333886224|ref|NP_001346911|]
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sperm-associated antigen 1 isoform 1 [Mus musculus]

Protein Classification

3a0801s09 and RPAP3_C domain-containing protein( domain architecture ID 13518458)

protein containing domains 3a0801s09, PLN03088, and RPAP3_C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 790-881 5.87e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 790 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 868
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886224 869 FKTMLTLINKGQK 881
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
230-343 1.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.75  E-value: 1.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 230 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 308
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886224 309 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 214-698 1.22e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.65  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 214 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 293
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 294 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 370
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 371 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 444
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 445 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 524
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 525 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 597
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 598 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 669
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886224 670 EAKLDCEQALQIDGENVKASHRLA--LAQKG 698
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 631-807 7.81e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 7.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 631 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 710
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 711 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 790
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886224 791 TNAYEFGQ----VLSTISARK 807
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 790-881 5.87e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 790 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 868
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886224 869 FKTMLTLINKGQK 881
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
230-343 1.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.75  E-value: 1.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 230 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 308
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886224 309 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 214-698 1.22e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.65  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 214 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 293
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 294 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 370
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 371 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 444
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 445 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 524
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 525 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 597
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 598 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 669
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886224 670 EAKLDCEQALQIDGENVKASHRLA--LAQKG 698
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
487-704 1.21e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.58  E-value: 1.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 487 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 566
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 567 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 646
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 647 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 704
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 443-603 2.27e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 443 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 522
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 523 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 602
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886224 603 P 603
Cdd:PLN03088  148 P 148
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 231-351 4.60e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.58  E-value: 4.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1333886224 310 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 351
Cdd:PLN03088   88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 232-343 1.42e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 311
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1333886224 312 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
258-291 2.35e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 291
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
654-685 2.47e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.47e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886224 654 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 654-685 7.94e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 7.94e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886224  654 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 258-291 8.84e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.84e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886224  258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 291
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 631-807 7.81e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 7.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 631 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 710
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 711 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 790
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886224 791 TNAYEFGQ----VLSTISARK 807
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 265-329 2.82e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 265 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 329
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 790-881 5.87e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 790 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 868
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1333886224 869 FKTMLTLINKGQK 881
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
230-343 1.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.75  E-value: 1.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 230 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 308
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333886224 309 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
239-343 2.76e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                          90       100
                  ....*....|....*....|....*.
gi 1333886224 318 VLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG0457   102 ALELDPDDAEALYNLGLALLELGRYD 127
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
207-350 4.34e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.11  E-value: 4.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 207 IETKIETAGLTEKEKSFLANRekgkGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKAL 285
Cdd:COG4785    59 AAERIDRALALPDLAQLYYER----GVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886224 286 ELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSELQT 350
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 214-698 1.22e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.65  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 214 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 293
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 294 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 370
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 371 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 444
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 445 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 524
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 525 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 597
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 598 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 669
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 1333886224 670 EAKLDCEQALQIDGENVKASHRLA--LAQKG 698
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 232-328 3.79e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 3.79e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 310
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90
                  ....*....|....*...
gi 1333886224 311 AVDDLRKVLQVEPDNDLA 328
Cdd:COG3914   199 AIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 223-325 4.58e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 4.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 223 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATT 301
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100
                  ....*....|....*....|....
gi 1333886224 302 YKHQNKLQEAVDDLRKVLQVEPDN 325
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDN 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
487-704 1.21e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.58  E-value: 1.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 487 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 566
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 567 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 646
Cdd:COG0457    73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 647 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 704
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 232-326 2.44e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 2.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 310
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*.
gi 1333886224 311 AVDDLRKVLQVEPDND 326
Cdd:COG4235   104 AIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
230-328 2.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 69.94  E-value: 2.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 230 GKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:COG4785    45 ALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124

                          90
                  ....*....|....*....
gi 1333886224 310 EAVDDLRKVLQVEPDNDLA 328
Cdd:COG4785   125 AALEDFDRALELDPDYAYA 143
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 225-343 3.86e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.52  E-value: 3.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 225 ANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYK 303
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1333886224 304 HQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
258-343 7.29e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 7.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 337
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87


                  ....*.
gi 1333886224 338 DLKNSE 343
Cdd:COG0457    88 ALGRYE 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 231-325 8.21e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 8.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:COG4783    44 LGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                          90
                  ....*....|....*.
gi 1333886224 310 EAVDDLRKVLQVEPDN 325
Cdd:COG4783   124 EAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
239-328 8.95e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 8.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG0457    90 GRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90
                  ....*....|.
gi 1333886224 318 VLQVEPDNDLA 328
Cdd:COG0457   170 LEAAALAALLA 180
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
432-582 1.12e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 1.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 432 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRAL 511
Cdd:COG4785    63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886224 512 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCgiqlaSDSANRIARILTE--LDGSKWRERLPPIPA 582
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-----NDPERALWLYLAErkLDPEKALALLLEDWA 202
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
239-324 1.31e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.42  E-value: 1.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEdCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG3063     6 GDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1333886224 318 VLQVEPD 324
Cdd:COG3063    85 ALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 235-323 1.86e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 66.14  E-value: 1.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 235 AFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVD 313
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1333886224 314 DLRKVLQVEP 323
Cdd:COG5010   144 ALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 232-343 3.50e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 3.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 310
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886224 311 AVDDLRKVLQVEPDNDlAKKTLSEVERDLKNSE 343
Cdd:COG2956   231 ALELLRKALELDPSDD-LLLALADLLERKEGLE 262
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
440-700 1.45e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 1.45e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 440 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 519
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 520 PLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaaetp 599
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELD--------------------------------------------------- 106

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 600 dqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQAL 679
Cdd:COG0457   107 -----PDD----------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                         250       260
                  ....*....|....*....|.
gi 1333886224 680 QIDGENVKASHRLALAQKGLE 700
Cdd:COG0457   172 AAALAALLAAALGEAALALAA 192
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 443-603 2.27e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 443 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 522
Cdd:PLN03088    3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 523 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 602
Cdd:PLN03088   75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                  .
gi 1333886224 603 P 603
Cdd:PLN03088  148 P 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 238-343 2.48e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.14  E-value: 2.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 238 SGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 316
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                          90       100
                  ....*....|....*....|....*..
gi 1333886224 317 KVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG2956   203 RALEQDPDYLPALPRLAELYEKLGDPE 229
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 231-351 4.60e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.58  E-value: 4.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1333886224 310 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 351
Cdd:PLN03088   88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
614-725 1.83e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 614 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 693
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886224 694 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 725
Cdd:COG0457   118 LALLELGRYDEAIEAYERALeLDPDDADALYNL 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-325 3.09e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 3.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 243 EAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 321
Cdd:COG4235     1 EAIARLRQALAANPNdAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....
gi 1333886224 322 EPDN 325
Cdd:COG4235    81 DPDN 84
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
614-725 1.30e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 1.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 614 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 693
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1333886224 694 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 725
Cdd:COG0457    84 LALQALGRYEEALEDYDKALeLDPDDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 239-343 1.97e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 1.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAeALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          90       100
                  ....*....|....*....|....*.
gi 1333886224 318 VLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYE 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 239-343 5.34e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.20  E-value: 5.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG2956    56 GEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135

                          90       100
                  ....*....|....*....|....*.
gi 1333886224 318 VLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG2956   136 LLKLGPENAHAYCELAELYLEQGDYD 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 571-708 5.63e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 5.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 571 SKWRERLPPIPAVPTSEPlrvwlpAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 650
Cdd:TIGR00990  86 GKTEEKKSTAPKNAPVEP------ADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 651 AcAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVD 708
Cdd:TIGR00990 160 P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 628-704 8.20e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 8.20e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 628 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 704
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
619-697 1.41e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 1.41e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886224 619 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQK 697
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 258-341 1.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 337
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                  ....
gi 1333886224 338 DLKN 341
Cdd:COG3914   158 RLGR 161
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 443-701 1.99e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 443 SGLKRRGNELFRGGQFAEAAAQYsVAIAQLEPtgsANADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 522
Cdd:COG2956     9 LGWYFKGLNYLLNGQPDKAIDLL-EEALELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 523 RRAMAYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELdgSKWRErlppipAVPTSEPLrvwlpAAETPDQD 602
Cdd:COG2956    81 ELAQDYLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQE--GDWEK------AIEVLERL-----LKLGPENA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 603 pcpnncmpsitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 682
Cdd:COG2956   145 ----------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                         250
                  ....*....|....*....
gi 1333886224 683 GENVKASHRLALAQKGLEN 701
Cdd:COG2956   209 PDYLPALPRLAELYEKLGD 227
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
610-695 2.45e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 2.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 610 PSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKAS 689
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144


                  ....*.
gi 1333886224 690 HRLALA 695
Cdd:COG4785   145 LNRGIA 150
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 619-725 3.27e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 3.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 619 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA--- 695
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAlrr 158

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1333886224 696 ----QKGLENCRESgvdpsqVLLSPDSSEAARHL 725
Cdd:COG3914   159 lgrlEEAIAALRRA------LELDPDNAEALNNL 186
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 234-337 3.86e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 3.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 234 EAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK---ALLRRATTYKHQN 306
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPnsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1333886224 307 KLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 337
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 412-697 4.80e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 4.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 412 RAEQQGGLRETATASTGDSHYPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIA-QLEPTGSANADELSILYSNR 490
Cdd:COG3914     5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 491 AACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldg 570
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---------------------- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 571 skwrerlppipavptseplrvwlpaaetPDqdpcpnncmpsitdekMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 650
Cdd:COG3914   143 ----------------------------PD----------------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1333886224 651 ACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKA-SHRLALAQK 697
Cdd:COG3914   179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQ 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 240-343 6.31e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 6.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 240 DYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVL 319
Cdd:COG5010    36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                          90       100
                  ....*....|....*....|....
gi 1333886224 320 QVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG5010   116 ALSPDNPNAYSNLAALLLSLGQDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 440-548 1.65e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.16  E-value: 1.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 440 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 519
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPD---NAD----ALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                          90       100
                  ....*....|....*....|....*....
gi 1333886224 520 PLLRRAMAYETLEQYRNAYVDYKTVLQID 548
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 231-572 1.91e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 310 EAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensgdeggkgsaderedggSDEAAmgNIQ 389
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGD--------------------------------------WEKAI--EVL 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 390 KKLmvrrseggrrsrrgrtpgpraeqqgglretATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAI 469
Cdd:COG2956   134 ERL------------------------------LKLGPENAHA------------YCELAELYLEQGDYDEAIEALEKAL 171

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 470 aQLEPtGSANAdelsilYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDC 549
Cdd:COG2956   172 -KLDP-DCARA------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                         330       340
                  ....*....|....*....|...
gi 1333886224 550 GiqlaSDSANRIARILTELDGSK 572
Cdd:COG2956   244 S----DDLLLALADLLERKEGLE 262
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
267-343 3.95e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 3.95e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 267 AEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVdDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 614-699 5.70e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 5.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 614 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 693
Cdd:COG3914   108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187


                  ....*.
gi 1333886224 694 LAQKGL 699
Cdd:COG3914   188 NALQDL 193
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 619-704 8.28e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 8.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 619 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKG 698
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                  ....*.
gi 1333886224 699 LENCRE 704
Cdd:COG4783   119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
628-695 1.32e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 1.32e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 628 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCEQALQIDGENVKASHRLALA 695
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 232-343 1.42e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 311
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1333886224 312 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
258-291 2.35e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 291
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
654-685 2.47e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.47e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886224 654 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 619-695 3.21e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 3.21e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 619 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 695
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 410-548 5.00e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 5.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 410 GPRAEQQGGLRETATASTGDSHYPEEPRAADNPSGL----KRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSI 485
Cdd:COG3914    42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallELAALLLQALGRYEEALALYRRALA-LNP-------DNAE 113

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886224 486 LYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 548
Cdd:COG3914   114 ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 277-348 5.75e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 5.75e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1333886224 277 ALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 348
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 654-685 7.94e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 7.94e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1333886224  654 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 258-291 8.84e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.84e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886224  258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 291
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 238-672 1.03e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 238 SGDYEEAVMYYTRSLSALPTAIA-YNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 316
Cdd:TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 317 KVLQVEPDNDLAKKTLSEVERDLKNSEpvselqtKGKRMVIEEVENSGDeggkgsaderedggSDEAAMGNIQKKLmvrr 396
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYA-------KAITSLKRALELKPD--------------NTEAQIGLAQLLL---- 680

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 397 seggrrsrrgrtpgpraeqqggLRETATASTGDSHYPEEPRAADnPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTg 476
Cdd:TIGR02917 681 ----------------------AAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPS- 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 477 SANADELsilysnrAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLqidcgiQLASD 556
Cdd:TIGR02917 736 SQNAIKL-------HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV------KKAPD 802

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 557 SA---NRIARILTELDGSKwrerlppipavptsePLRVWLPAAETPDQDPcpnncmpsitdekmfQALKEEGNQLVKDKN 633
Cdd:TIGR02917 803 NAvvlNNLAWLYLELKDPR---------------ALEYAERALKLAPNIP---------------AILDTLGWLLVEKGE 852

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 1333886224 634 YKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAK 672
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
285-577 1.04e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.08  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 285 LELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensg 364
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------- 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 365 deggkgsaderedggsDEAAMGNIQKKLMVrrseggrrsrrgrtpgpraeqqgglretatastgdshypeeprAADNPSG 444
Cdd:COG0457    58 ----------------YEEALADYEQALEL-------------------------------------------DPDDAEA 78

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 445 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 524
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1333886224 525 AMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSKWRERL 577
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 437-700 1.08e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 1.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 437 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPF 516
Cdd:COG2956    71 RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 517 SVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaa 596
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLD------------------------------------------------ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 597 etpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCE 676
Cdd:COG2956   175 --------PDC----------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

                         250       260
                  ....*....|....*....|....*.
gi 1333886224 677 QALQIDGEN--VKASHRLALAQKGLE 700
Cdd:COG2956   237 KALELDPSDdlLLALADLLERKEGLE 262
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 440-548 1.83e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 440 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK 519
Cdd:COG4783    36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100
                  ....*....|....*....|....*....
gi 1333886224 520 PLLRRAMAYETLEQYRNAYVDYKTVLQID 548
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 239-322 2.67e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 2.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:COG3914   160 GRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239


                  ....*
gi 1333886224 318 VLQVE 322
Cdd:COG3914   240 LAALA 244
TPR_12 pfam13424
Tetratricopeptide repeat;
257-321 2.93e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.93e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333886224 257 TAIAYNNRAQAEIKLQRWSSALEDCEKALEL--------DPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 321
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 232-325 3.32e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 3.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALPTAiAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRS-LYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210

                          90
                  ....*....|....*.
gi 1333886224 310 EAVDDLRKVLQVEPDN 325
Cdd:TIGR02917 211 LALAAYRKAIALRPNN 226
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 625-695 3.55e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 3.55e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333886224 625 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 695
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
614-682 3.84e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 3.84e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886224 614 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 682
Cdd:COG3063    22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 452-548 4.11e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 4.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 452 LFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 531
Cdd:COG5010    64 YNKLGDFEESLALLEQAL-QLDP-------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....*..
gi 1333886224 532 EQYRNAYVDYKTVLQID 548
Cdd:COG5010   136 GQDDEAKAALQRALGTS 152
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
645-721 5.85e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 5.85e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 645 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 721
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 631-807 7.81e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 7.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 631 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 710
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 711 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 790
Cdd:PLN03088   85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                         170       180
                  ....*....|....*....|.
gi 1333886224 791 TNAYEFGQ----VLSTISARK 807
Cdd:PLN03088  156 KYRHEFYQkpeeVVVTVFAKG 176
TPR_17 pfam13431
Tetratricopeptide repeat;
281-312 1.05e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 1.05e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1333886224 281 CEKALELDPGNVKALLRRATTYKHQNKLQEAV 312
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
452-548 1.07e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 452 LFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQdCNRALELHPFSVKPLLRRAMAYETL 531
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALE-LDP-------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....*..
gi 1333886224 532 EQYRNAYVDYKTVLQID 548
Cdd:COG3063    73 GDYDEALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 451-564 1.38e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 451 ELFRGGQFAEAAAQYSvAIAQLEPTGSANADelsILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK---PLLRRAMA 527
Cdd:COG1729     2 ALLKAGDYDEAIAAFK-AFLKRYPNSPLAPD---ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886224 528 YETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARI 564
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
TPR_1 pfam00515
Tetratricopeptide repeat;
292-325 1.42e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.42e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1333886224 292 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 325
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 490-685 2.43e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 490 RAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteld 569
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 570 gskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINS 649
Cdd:COG4783    69 -----------------------------------PDE----------PEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1333886224 650 KACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 232-341 2.49e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLSALPTA-IAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 310
Cdd:TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSpLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1333886224 311 AVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 341
Cdd:TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 231-348 2.65e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKA-LLRRATTYKHQNKL 308
Cdd:COG3071    22 EGLLALAEGRYARAEKLLSKAAEHSEApLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQA 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1333886224 309 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 348
Cdd:COG3071   102 EQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEL 141
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 254-548 2.81e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 2.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 254 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 331
Cdd:COG2956     2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 332 LSEVERDLKNSEpvselqtkgkrmvieevensgdeggkgsaderedggsdeaamgniqkklmvrrseggrrsrrgrtpgp 411
Cdd:COG2956    82 LAQDYLKAGLLD-------------------------------------------------------------------- 93

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 412 RAEQqggLRETATAStgdshypeeprAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsanADELSILYSNRA 491
Cdd:COG2956    94 RAEE---LLEKLLEL-----------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELA 151

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 492 ACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 548
Cdd:COG2956   152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 265-329 2.82e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333886224 265 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 329
Cdd:cd24142     5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 258-290 2.82e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.04  E-value: 2.82e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPG 290
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 231-291 3.52e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 3.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 291
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPespdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 614-682 3.65e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 3.65e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1333886224 614 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 682
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 487-515 3.91e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 3.91e-04
                           10        20
                   ....*....|....*....|....*....
gi 1333886224  487 YSNRAACYLKEGNCRDCIQDCNRALELHP 515
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 292-325 6.27e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 6.27e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1333886224  292 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 325
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 432-548 9.23e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 9.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 432 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQDCNRAL 511
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1333886224 512 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 548
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 447-569 1.07e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 447 RRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAM 526
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKAL-ELDPD---NPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1333886224 527 AYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELD 569
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALG 120
TPR_19 pfam14559
Tetratricopeptide repeat;
273-330 1.27e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1333886224 273 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKK 330
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 654-682 1.33e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.33e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886224 654 IYTNRALCYLKLGQFEEAKLDCEQALQID 682
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_8 pfam13181
Tetratricopeptide repeat;
654-682 1.99e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 1.99e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886224 654 IYTNRALCYLKLGQFEEAKLDCEQALQID 682
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 236-299 4.32e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 4.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333886224 236 FYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRA 299
Cdd:COG4235    62 LAAGDTEEAEELLERALALDPDNPeALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 649-695 4.50e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 39.63  E-value: 4.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1333886224 649 SKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 695
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALY 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 239-328 5.18e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 5.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 239 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 317
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90
                  ....*....|.
gi 1333886224 318 VLQVEPDNDLA 328
Cdd:TIGR02917 253 LLKKAPNSPLA 263
TPR_1 pfam00515
Tetratricopeptide repeat;
487-515 5.45e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.45e-03
                          10        20
                  ....*....|....*....|....*....
gi 1333886224 487 YSNRAACYLKEGNCRDCIQDCNRALELHP 515
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 258-351 5.54e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 5.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 258 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 337
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 1333886224 338 DLKNSEPVSELQTK 351
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 632-685 6.94e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.66  E-value: 6.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1333886224 632 KNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 685
Cdd:TIGR02552  65 KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
TPR_9 pfam13371
Tetratricopeptide repeat;
269-328 7.11e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 7.11e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 269 IKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLA 328
Cdd:pfam13371   6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_12 pfam13424
Tetratricopeptide repeat;
236-287 8.49e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 8.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333886224 236 FYSGDYEEAVMYYTRSLSA---------LPTAIAYNNRAQAEIKLQRWSSALEDCEKALEL 287
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIarrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-343 9.23e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 9.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 231 KGNEAFYSGDYEEAVMYYTRSLSALPTAIAYN-NRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 309
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLlALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1333886224 310 EAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 343
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
232-342 9.64e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 9.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333886224 232 GNEAFYSGDYEEAVMYYTRSLsalpTAIAYNN------RAQAEIKLQRWSSALEDCEKALELDPG--NVKALLRRATTYK 303
Cdd:COG4700    96 ADALLELGRYDEAIELYEEAL----TGIFADDphillgLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALE 171

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1333886224 304 HQNKLQEAVDDLRKVLQVEP----------------DNDLAKKTLSEVERDLKNS 342
Cdd:COG4700   172 ALGDLEAAEAELEALARRYSgpearyryakflarqgRTAEAKELLEEILDEAKHM 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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