NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|597436925|ref|NP_001277931|]
View 

N-acetylgalactosamine kinase isoform a [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PLN02521 super family cl33510
galactokinase
18-456 2.41e-160

galactokinase


The actual alignment was detected with superfamily member PLN02521:

Pssm-ID: 215285 [Multi-domain]  Cd Length: 497  Bit Score: 462.64  E-value: 2.41e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHT-LQLANTDPLYP--DFSTT 94
Cdd:PLN02521  31 RYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKkLRIANVNDKYTtcTFPAD 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  95 ANNiCIDKTKPLWHNYFLCGFKGIQEHFGLSK--LP---GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKV 169
Cdd:PLN02521 111 PDQ-EVDLANHKWGNYFICGYKGVFEFLKSKGvdVGppvGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKK 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 170 ELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLPSGAVFVIANSCMEMNKAATSH--FNVRVMEC 247
Cdd:PLN02521 190 EVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAAtnYNNRVVEC 269
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 248 RLAAKVLAKHKGLQWD----NVLRLEEVQsKLGISLEE------MLLVTEDALHPEPYSREEICRCLGISLERLRTQilT 317
Cdd:PLN02521 270 RLAAIVLAVKLGMSAEeaisKVKTLSDVE-GLCVSFAGshgssdPAVAVKELLHEGPYTAEEIEEILGESLTSIFKN--S 346
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 318 PNTQDELT----FKLYQRAKHVYSEAARVLQFKQVCEDAPDNAVQL--LGELMNQSHRSCRDMYECSCPELDQLVDICRK 391
Cdd:PLN02521 347 PTSLAVLKaakhFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLkkLGDLMNESHYSCSVLYECSCPELEELVKVCRD 426
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597436925 392 FGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQgntSRLAQEKHS-------LFATKPGGGALVFR 456
Cdd:PLN02521 427 NGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYK---SRIEKGVIKeedlglyVFASKPSSGAAILK 495
 
Name Accession Description Interval E-value
PLN02521 PLN02521
galactokinase
18-456 2.41e-160

galactokinase


Pssm-ID: 215285 [Multi-domain]  Cd Length: 497  Bit Score: 462.64  E-value: 2.41e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHT-LQLANTDPLYP--DFSTT 94
Cdd:PLN02521  31 RYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKkLRIANVNDKYTtcTFPAD 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  95 ANNiCIDKTKPLWHNYFLCGFKGIQEHFGLSK--LP---GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKV 169
Cdd:PLN02521 111 PDQ-EVDLANHKWGNYFICGYKGVFEFLKSKGvdVGppvGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKK 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 170 ELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLPSGAVFVIANSCMEMNKAATSH--FNVRVMEC 247
Cdd:PLN02521 190 EVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAAtnYNNRVVEC 269
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 248 RLAAKVLAKHKGLQWD----NVLRLEEVQsKLGISLEE------MLLVTEDALHPEPYSREEICRCLGISLERLRTQilT 317
Cdd:PLN02521 270 RLAAIVLAVKLGMSAEeaisKVKTLSDVE-GLCVSFAGshgssdPAVAVKELLHEGPYTAEEIEEILGESLTSIFKN--S 346
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 318 PNTQDELT----FKLYQRAKHVYSEAARVLQFKQVCEDAPDNAVQL--LGELMNQSHRSCRDMYECSCPELDQLVDICRK 391
Cdd:PLN02521 347 PTSLAVLKaakhFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLkkLGDLMNESHYSCSVLYECSCPELEELVKVCRD 426
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597436925 392 FGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQgntSRLAQEKHS-------LFATKPGGGALVFR 456
Cdd:PLN02521 427 NGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYK---SRIEKGVIKeedlglyVFASKPSSGAAILK 495
GalK COG0153
Galactokinase [Carbohydrate transport and metabolism];
18-452 9.48e-87

Galactokinase [Carbohydrate transport and metabolism];


Pssm-ID: 439923 [Multi-domain]  Cd Length: 380  Bit Score: 270.10  E-value: 9.48e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANTDplYPD-FSTTAN 96
Cdd:COG0153    1 RLERLIEAFEEAFGEEPEGVFSAPGRVNLIGEHTDYNGGFVLPAAIDRGTYAAARPRDDRKVRVYSAD--FDEeVEFDLD 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  97 NICIDKTKPlWHNYFLcG-FKGIQEHfGLsKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEIC 175
Cdd:COG0153   79 DLEPGEEDG-WANYVR-GvAWALQER-GY-KLGGFDLVIDGDVPLGAGLSSSAALEVAVALALNDLFGLGLDPVELAKIG 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 176 AKSE-RYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLP-SGAVFVIANScmemNK---AATSHFNVRVMECRLA 250
Cdd:COG0153  155 QRAEnEFVGVPCGIMDQFASALGKKGHALLLDCRSLEYEYVPLPlEGYALVIVDT----NVkhsLADSEYNERRAECEAA 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 251 AKVLAKhkglqwdNVLRleEVqsklgiSLEEmllvtedalhpepysreeicrclgisLERLRTQILTPntqdeltfKLYQ 330
Cdd:COG0153  231 AAILGV-------KSLR--DV------TLED--------------------------LEAARARLGDE--------VLRR 261
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 331 RAKHVYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKF-GAKGSRLTGAGWGGCTV 409
Cdd:COG0153  262 RARHVVTENQRVLEAVEALR---AGDLEAFGKLMNASHASLRDDYEVSCPELDTLVELALAEaGVLGARMTGGGFGGCTI 338
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 597436925 410 SLVPADMLSSFLASVHEAYYQGntsrlAQEKHSLFATKPGGGA 452
Cdd:COG0153  339 ALVPKDAVDEFIEAVAEAYAEK-----TGLEPDFYVVKPSDGA 376
gal_kin TIGR00131
galactokinase; Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, ...
20-428 1.88e-79

galactokinase; Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity. [Energy metabolism, Sugars]


Pssm-ID: 272924 [Multi-domain]  Cd Length: 386  Bit Score: 251.67  E-value: 1.88e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925   20 LKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTH--TLQLANTDPLYPDFSTtanN 97
Cdd:TIGR00131   2 ESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKnvRIYLANADNKFAERSL---D 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925   98 ICIDKTKPL-WHNYFLCGFKGIQEHFGLSKLpGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELA-EIC 175
Cdd:TIGR00131  79 LPLDGSEVSdWANYFKGVLHVAQERFNSFPL-GADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILlRIQ 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  176 AKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLP-SGAVFVIANSCMEMNkAATSHFNVRVMECRLAAKVL 254
Cdd:TIGR00131 158 VAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPqLGIAFVIANTNVKRT-LAPSNYNTRRQECTTAANFL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  255 AKhkglqwDNVLRLEEVQsklgisleemllvtedalhPEPYSREEicrclgislERLrtQILTPNTQdeltfklyQRAKH 334
Cdd:TIGR00131 237 AA------TDKGALRDFM-------------------NEYFARYI---------ARL--TKMLPLVE--------ERAKH 272
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  335 VYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICR-KFGAKGSRLTGAGWGGCTVSLVP 413
Cdd:TIGR00131 273 VVSENLRVLKAVKAMK---DNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAAlVNGSGGSRMTGAGFGGCTVHLVP 349
                         410
                  ....*....|....*
gi 597436925  414 ADMLSSFLASVHEAY 428
Cdd:TIGR00131 350 NENVDKVRQAVADKY 364
GalKase_gal_bdg pfam10509
Galactokinase galactose-binding signature; This is the highly conserved galactokinase ...
26-73 3.44e-21

Galactokinase galactose-binding signature; This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry. The function of this domain appears to be to bind galactose, and the domain is normally at the N-terminus of the enzymes, EC:2.7.1.6. This domain is associated with the families GHMP_kinases_C, pfam08544 and GHMP_kinases_N, pfam00288.


Pssm-ID: 463125 [Multi-domain]  Cd Length: 50  Bit Score: 86.35  E-value: 3.44e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 597436925   26 FNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEP 73
Cdd:pfam10509   3 FEELFGKEPVGVASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSP 50
 
Name Accession Description Interval E-value
PLN02521 PLN02521
galactokinase
18-456 2.41e-160

galactokinase


Pssm-ID: 215285 [Multi-domain]  Cd Length: 497  Bit Score: 462.64  E-value: 2.41e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHT-LQLANTDPLYP--DFSTT 94
Cdd:PLN02521  31 RYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKkLRIANVNDKYTtcTFPAD 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  95 ANNiCIDKTKPLWHNYFLCGFKGIQEHFGLSK--LP---GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKV 169
Cdd:PLN02521 111 PDQ-EVDLANHKWGNYFICGYKGVFEFLKSKGvdVGppvGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKK 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 170 ELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLPSGAVFVIANSCMEMNKAATSH--FNVRVMEC 247
Cdd:PLN02521 190 EVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAAtnYNNRVVEC 269
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 248 RLAAKVLAKHKGLQWD----NVLRLEEVQsKLGISLEE------MLLVTEDALHPEPYSREEICRCLGISLERLRTQilT 317
Cdd:PLN02521 270 RLAAIVLAVKLGMSAEeaisKVKTLSDVE-GLCVSFAGshgssdPAVAVKELLHEGPYTAEEIEEILGESLTSIFKN--S 346
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 318 PNTQDELT----FKLYQRAKHVYSEAARVLQFKQVCEDAPDNAVQL--LGELMNQSHRSCRDMYECSCPELDQLVDICRK 391
Cdd:PLN02521 347 PTSLAVLKaakhFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLkkLGDLMNESHYSCSVLYECSCPELEELVKVCRD 426
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597436925 392 FGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQgntSRLAQEKHS-------LFATKPGGGALVFR 456
Cdd:PLN02521 427 NGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYK---SRIEKGVIKeedlglyVFASKPSSGAAILK 495
GalK COG0153
Galactokinase [Carbohydrate transport and metabolism];
18-452 9.48e-87

Galactokinase [Carbohydrate transport and metabolism];


Pssm-ID: 439923 [Multi-domain]  Cd Length: 380  Bit Score: 270.10  E-value: 9.48e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANTDplYPD-FSTTAN 96
Cdd:COG0153    1 RLERLIEAFEEAFGEEPEGVFSAPGRVNLIGEHTDYNGGFVLPAAIDRGTYAAARPRDDRKVRVYSAD--FDEeVEFDLD 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  97 NICIDKTKPlWHNYFLcG-FKGIQEHfGLsKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEIC 175
Cdd:COG0153   79 DLEPGEEDG-WANYVR-GvAWALQER-GY-KLGGFDLVIDGDVPLGAGLSSSAALEVAVALALNDLFGLGLDPVELAKIG 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 176 AKSE-RYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLP-SGAVFVIANScmemNK---AATSHFNVRVMECRLA 250
Cdd:COG0153  155 QRAEnEFVGVPCGIMDQFASALGKKGHALLLDCRSLEYEYVPLPlEGYALVIVDT----NVkhsLADSEYNERRAECEAA 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 251 AKVLAKhkglqwdNVLRleEVqsklgiSLEEmllvtedalhpepysreeicrclgisLERLRTQILTPntqdeltfKLYQ 330
Cdd:COG0153  231 AAILGV-------KSLR--DV------TLED--------------------------LEAARARLGDE--------VLRR 261
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 331 RAKHVYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKF-GAKGSRLTGAGWGGCTV 409
Cdd:COG0153  262 RARHVVTENQRVLEAVEALR---AGDLEAFGKLMNASHASLRDDYEVSCPELDTLVELALAEaGVLGARMTGGGFGGCTI 338
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 597436925 410 SLVPADMLSSFLASVHEAYYQGntsrlAQEKHSLFATKPGGGA 452
Cdd:COG0153  339 ALVPKDAVDEFIEAVAEAYAEK-----TGLEPDFYVVKPSDGA 376
gal_kin TIGR00131
galactokinase; Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, ...
20-428 1.88e-79

galactokinase; Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity. [Energy metabolism, Sugars]


Pssm-ID: 272924 [Multi-domain]  Cd Length: 386  Bit Score: 251.67  E-value: 1.88e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925   20 LKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTH--TLQLANTDPLYPDFSTtanN 97
Cdd:TIGR00131   2 ESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKnvRIYLANADNKFAERSL---D 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925   98 ICIDKTKPL-WHNYFLCGFKGIQEHFGLSKLpGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELA-EIC 175
Cdd:TIGR00131  79 LPLDGSEVSdWANYFKGVLHVAQERFNSFPL-GADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILlRIQ 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  176 AKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLP-SGAVFVIANSCMEMNkAATSHFNVRVMECRLAAKVL 254
Cdd:TIGR00131 158 VAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPqLGIAFVIANTNVKRT-LAPSNYNTRRQECTTAANFL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  255 AKhkglqwDNVLRLEEVQsklgisleemllvtedalhPEPYSREEicrclgislERLrtQILTPNTQdeltfklyQRAKH 334
Cdd:TIGR00131 237 AA------TDKGALRDFM-------------------NEYFARYI---------ARL--TKMLPLVE--------ERAKH 272
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  335 VYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICR-KFGAKGSRLTGAGWGGCTVSLVP 413
Cdd:TIGR00131 273 VVSENLRVLKAVKAMK---DNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAAlVNGSGGSRMTGAGFGGCTVHLVP 349
                         410
                  ....*....|....*
gi 597436925  414 ADMLSSFLASVHEAY 428
Cdd:TIGR00131 350 NENVDKVRQAVADKY 364
PRK05101 PRK05101
galactokinase; Provisional
21-430 3.19e-48

galactokinase; Provisional


Pssm-ID: 179937 [Multi-domain]  Cd Length: 382  Bit Score: 169.72  E-value: 3.19e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  21 KLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQL--ANTDPLYPDFSTTAnNI 98
Cdd:PRK05101   6 KTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRViaADYDNQQDEFSLDA-PI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  99 CIDKTKpLWHNYFLCGFKGIQEHfgLSKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEICAKS 178
Cdd:PRK05101  85 VPHPEQ-QWANYVRGVVKHLQER--NPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 179 E-RYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLPSGAVFVIANScmemNKA---ATSHFNVRVMECRLAAKVL 254
Cdd:PRK05101 162 EnQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINS----NVKrglVDSEYNTRRQQCETAARFF 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 255 akhkglqwdNVLRLEEVqsklgisleemllvtedalhpepysreeicrclgiSLERLRTQiltpntQDELTFKLYQRAKH 334
Cdd:PRK05101 238 ---------GVKALRDV-----------------------------------TLEQFNAV------AAELDPVVAKRARH 267
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 335 VYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICR-KFGAKGS-RLTGAGWGGCTVSLV 412
Cdd:PRK05101 268 VITENARTLEAASALA---AGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKaVIGDQGGvRMTGGGFGGCIVALV 344
                        410
                 ....*....|....*...
gi 597436925 413 PADMLSSFLASVHEAYYQ 430
Cdd:PRK05101 345 PEELVEAVRQAVAEQYEA 362
PRK05322 PRK05322
galactokinase; Provisional
21-428 8.27e-47

galactokinase; Provisional


Pssm-ID: 235407 [Multi-domain]  Cd Length: 387  Bit Score: 166.19  E-value: 8.27e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  21 KLKEMFNSKFGSTPK--FYvrAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANTDplYPD---FSTTA 95
Cdd:PRK05322   5 ELKKKFAEVFGEEAEdvFF--SPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSAN--FEDlgiIEFDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  96 NNICIDKtKPLWHNYFLCGFKGIQEHfGLSKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEIC 175
Cdd:PRK05322  81 DDLSFDK-EDDWANYPKGVLKFLQEA-GYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 176 AKSE-RYIGTEGGGMDQSISFLAEEGTAKLI-------EFSPLratnvKLpSGAVFVIANScmemNKA---ATSHFNVRV 244
Cdd:PRK05322 159 QKTEnEFIGVNSGIMDQFAIGMGKKDHAILLdcntleyEYVPL-----DL-GDYVIVIMNT----NKRrelADSKYNERR 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 245 MECRLAakvlakhkglqwdnvlrLEEVQSKLGI-SLEEmllvtedalhpepysreeicrclgislerlrtqiLTPNTQDE 323
Cdd:PRK05322 229 AECEKA-----------------LEELQKKLDIkSLGE----------------------------------LTEEEFDE 257
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 324 LTF-----KLYQRAKHVYSEAARVLQFKQVCEdapDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKF-GAKGS 397
Cdd:PRK05322 258 YSYlikdeTLLKRARHAVTENQRTLKAVKALK---AGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQeGVLGA 334
                        410       420       430
                 ....*....|....*....|....*....|.
gi 597436925 398 RLTGAGWGGCTVSLVPADMLSSFLASVHEAY 428
Cdd:PRK05322 335 RMTGAGFGGCAIAIVKKDKVEAFKENVGKAY 365
PRK03817 PRK03817
galactokinase; Provisional
38-429 9.55e-41

galactokinase; Provisional


Pssm-ID: 235163 [Multi-domain]  Cd Length: 351  Bit Score: 148.99  E-value: 9.55e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  38 VRAPGRVNIIGEHIDYC-GYsVIPMAVEQDMLIAVEPV-KTHtlqlantdpLYPDFSTTANNICIDKTKPL--WHNYFLC 113
Cdd:PRK03817   3 VKSPGRVNLIGEHTDYNdGY-VLPFAINLYTFLEIEKSeKFI---------FYSENFNEEKTFELDKLEKLnsWADYIKG 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 114 GFKGIQEHFGlsKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEICAKSER-YIGTEGGGMDQS 192
Cdd:PRK03817  73 VIWVLEKRGY--EVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENeFVGVPCGIMDQF 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 193 ISFLAEEGTAKLIEFSPLRATNVKLPSGAVFVIANSCMEmNKAATSHFNVRVMECRLAAKVLAKHkglqwdnvlrleevq 272
Cdd:PRK03817 151 AVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDTGVK-RELASSEYNERRQECEEALKILGKK--------------- 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 273 sklgiSLEEmllVTEDalhpepysreeicrclgiSLERLrtqiltpntqDELTFKlyqRAKHVYSEAARVLQFKQVCEda 352
Cdd:PRK03817 215 -----SSKE---VTEE------------------DLSKL----------PPLLRK---RAGYVLRENERVLKVRDALK-- 253
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597436925 353 pDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYY 429
Cdd:PRK03817 254 -EGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYK 329
PRK00555 PRK00555
galactokinase; Provisional
40-452 9.90e-31

galactokinase; Provisional


Pssm-ID: 179063 [Multi-domain]  Cd Length: 363  Bit Score: 121.89  E-value: 9.90e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  40 APGRVNIIGEHIDY-CGYSvIPMAVEQDMLIAVEPVKTHTLQLANtdplypDFSTTANNICIDkTKPL----WHNYFLCG 114
Cdd:PRK00555   7 APGRINLIGEHTDYnLGFA-LPIALPQRTVVTFTPEHTDAITASS------DRADGSARIPLD-TTPGqvtgWAAYAAGV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 115 FKGIQEHFglSKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEICAKSER-YIGTEGGGMDQSI 193
Cdd:PRK00555  79 IWALRGAG--HPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENeYVGAPTGLLDQLA 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 194 SFLAEEGTAKLIEFSPLRATNVKLPSGA--VFVIANSCMEMNKAATSHFNVRVMECRLAAKVLAkhkglqwdnVLRLEEV 271
Cdd:PRK00555 157 ALFGAPKTALLIDFRDLTVRPVAFDPDAagVVLLLMDSRARHRHAGGEYAARRASCERAAADLG---------VSSLRAV 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 272 QSKLGISLEEmllvtedalhpepysreeicrclgislerlrtqiltpnTQDELTFKlyqRAKHVYSEAARVLQFKQVCED 351
Cdd:PRK00555 228 QDRGLAALGA--------------------------------------IADPIDAR---RARHVLTENQRVLDFAAALAD 266
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 352 APDNAVqllGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQG 431
Cdd:PRK00555 267 SDFTAA---GQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA 343
                        410       420
                 ....*....|....*....|.
gi 597436925 432 NTSRlaqekHSLFATKPGGGA 452
Cdd:PRK00555 344 GYPE-----PAVSRTYAAPGA 359
GalKase_gal_bdg pfam10509
Galactokinase galactose-binding signature; This is the highly conserved galactokinase ...
26-73 3.44e-21

Galactokinase galactose-binding signature; This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry. The function of this domain appears to be to bind galactose, and the domain is normally at the N-terminus of the enzymes, EC:2.7.1.6. This domain is associated with the families GHMP_kinases_C, pfam08544 and GHMP_kinases_N, pfam00288.


Pssm-ID: 463125 [Multi-domain]  Cd Length: 50  Bit Score: 86.35  E-value: 3.44e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 597436925   26 FNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEP 73
Cdd:pfam10509   3 FEELFGKEPVGVASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSP 50
PLN02865 PLN02865
galactokinase
38-454 1.24e-17

galactokinase


Pssm-ID: 215466 [Multi-domain]  Cd Length: 423  Bit Score: 84.47  E-value: 1.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  38 VRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEP-----VKTHTLQLANTDPLYPDFSTTANNICIDKTKP--LWHNY 110
Cdd:PLN02865  33 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPsgdpeVLLRSAQFEGEVRFRVDEIQHPIANVSSDSKEesNWGDY 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 111 FLCGFKGIQEhFGLSKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTL-TVLGLRLSKVELAEICAKSE-RYIGTEGGG 188
Cdd:PLN02865 113 ARGAVYALQS-RGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALeNANNLTVSPEDNIELDRLIEnEYLGLRNGI 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 189 MDQSISFLAEEGTAKLIEFSPLRATNVKLPSGAV-------FVIANSCMEMNKAATSHFNVRVMECRLAAKVLAKHKGLq 261
Cdd:PLN02865 192 LDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPggekpfkILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGN- 270
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 262 wdnvlrlEEVQSKLGisleemllvtedALHPEPYSREeicrclgislerlrtqiltpntQDELTFKLYQRAKHVYSEAAR 341
Cdd:PLN02865 271 -------DELEPLLC------------NVEPEVYEAH----------------------KCKLEAVLARRAEHYFSENMR 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 342 VLqfKQVcEDAPDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKF-GAKGSRLTGAGWGGCTVSLVPADMLSSF 420
Cdd:PLN02865 310 VI--KGV-EAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKApGVYGARFSGAGFRGCCVAFVDAEMAEEA 386
                        410       420       430
                 ....*....|....*....|....*....|....*..
gi 597436925 421 LASVHEAYYQGN---TSRLAQEKHSLFaTKPGGGALV 454
Cdd:PLN02865 387 ASFVRDEYEKAQpelASNINGDKPVLI-CEAGDCARV 422
PTZ00290 PTZ00290
galactokinase; Provisional
40-454 1.82e-17

galactokinase; Provisional


Pssm-ID: 240347 [Multi-domain]  Cd Length: 468  Bit Score: 84.49  E-value: 1.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  40 APGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVK---THTLQLANTDPLYPDfsttannicIDKTKPLWHN----YFL 112
Cdd:PTZ00290  42 APGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKhfcDHKLRFATETDEHFV---------LDHLGGAKHNkawtTFV 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 113 CGFKGIQ-EHFGLS----KLPGMNCLVDGNIPPSSGLSSSSAL-VCCAGLVTLTVLGL----------------RLSKVE 170
Cdd:PTZ00290 113 RGAATLRlNRLGVAidapSLQGVCMVVHGTLPMGAGMSASASFgVALLNAINTVVTRRykgcptspgrrysilpPMSKEE 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 171 LAEIcAKSERYIGTEGGG-----MDQSISFLAEEG----------TAKLIEFSPLratnvkLPSGAVFVIANScmemnka 235
Cdd:PTZ00290 193 LIEL-AKQARRIETEFCGvnvgiMDQFISAFAEEDkfmfldckslTFESHDMTPL------LGDGACFLLIDS------- 258
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 236 atshfnvrvmecrlaakvLAKHKGL----QWDNVLR--LEEVQSKLGisleemllvtEDALHPEPYSREEICRCLGISLE 309
Cdd:PTZ00290 259 ------------------MIKHDLLggtaGMYNTVRsdQEGAQKKIG----------KHRYRGKPFTFSDLVRNPKKYTF 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 310 RLRTQILTPNTQDELTFKLYQRAKHVYSEAARVLQFKQVCEDA----PDNAVQLLGELMNQSHRSCRDMYECSCPELDQL 385
Cdd:PTZ00290 311 DGDVVAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPElplsREERFRKAGEILNAGHQGMRDLMKITTPELDFI 390
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 386 VD-ICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYyqgnTSRLAQEkHSLFATKPGGGALV 454
Cdd:PTZ00290 391 HElINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF----KARFGVE-NDVYPVVAGDGAFV 455
ERG12 COG1577
Mevalonate kinase [Lipid transport and metabolism]; Mevalonate kinase is part of the Pathway ...
40-412 9.66e-15

Mevalonate kinase [Lipid transport and metabolism]; Mevalonate kinase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 441185 [Multi-domain]  Cd Length: 277  Bit Score: 74.11  E-value: 9.66e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  40 APGRVNIIGEHID-YcGYSVIPMAVEQDMLIAVEPVKTHTLQLaNTDPLYPDFSTTANnicidkTKPLWHnYFLCGFKGI 118
Cdd:COG1577    1 APGKLILFGEHAVvY-GQPAIAVAVDRRATVTVEPSDDDKLRI-ESPDLGGTLDLDPL------ADAALR-YIKAAIEAA 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 119 QEHFGLsKLPGMNCLVDGNIPPSsglssssalvccAGL-----VT-------LTVLGLRLSKVELAEICAKSERYIGTEG 186
Cdd:COG1577   72 LEYLGL-PLKGFDIEIDSEIPRK------------RGLgssaaVAvaviralAAFYGVELSKEELFKLALEAEKIVHGNP 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 187 GGMDQSISFLaeEGtakLIEF-SPLRATNVKLPSGAVFVIANSCmemNKAATSHfnvrvmecrLAAKVLAkhkglqwdnv 265
Cdd:COG1577  139 SGLDTAASTY--GG---PIYYqRGDRAEPLELPKNLPLVVGDTG---VPASTKE---------LVAKVRK---------- 191
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 266 lRLEEvqsklgisleemllvtedalHPEPYSReeicrclgislerlrtqiltpntqdeltfkLYQRAKHVYSEAARVLQf 345
Cdd:COG1577  192 -LKER--------------------NPELYEA------------------------------FLEEIGDLVEEAIEALE- 219
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597436925 346 kqvcedapDNAVQLLGELMNQSHRSCRDMYeCSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLV 412
Cdd:COG1577  220 --------EGDLEALGELMNENHGLLRALG-VSTPELDRLVEAARKAGALGAKLTGAGGGGCVIALA 277
PTZ00298 PTZ00298
mevalonate kinase; Provisional
327-411 9.79e-12

mevalonate kinase; Provisional


Pssm-ID: 240351 [Multi-domain]  Cd Length: 328  Bit Score: 66.03  E-value: 9.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 327 KLYQRAKHVYSEAARVLQfkqvcedapDNAVQLLGELMNQSHRSCRDMyECSCPELDQLVDICRKFGAKGSRLTGAGWGG 406
Cdd:PTZ00298 218 RLLENYNACVSEAKEALQ---------KGNLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGG 287

                 ....*
gi 597436925 407 CTVSL 411
Cdd:PTZ00298 288 LVVAL 292
mevalon_kin TIGR00549
mevalonate kinase; This model represents mevalonate kinase, the third step in the mevalonate ...
40-411 2.46e-11

mevalonate kinase; This model represents mevalonate kinase, the third step in the mevalonate pathway of isopentanyl pyrophosphate (IPP) biosynthesis. IPP is a common intermediate for a number of pathways including cholesterol biosynthesis. This model covers enzymes from eukaryotes, archaea and bacteria. The related enzyme from the same pathway, phosphmevalonate kinase, serves as an outgroup for this clade. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped. [Central intermediary metabolism, Other]


Pssm-ID: 273130 [Multi-domain]  Cd Length: 273  Bit Score: 63.85  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925   40 APGRVNIIGEHIDYCGYSVIPMAVEQDM-LIAVEPVKTHTLQLANTDPLYPDFSTTANNIcidktkplwhnyFLCGFKGI 118
Cdd:TIGR00549   1 APGKIILFGEHAVVYGEPAIAAPIPLRTtVTVIESSDGSFIESDLGRGSLDDAPDELDGL------------KYVLAEFL 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  119 QeHFGLSKLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEICAKSERYIGTEGGGMDQSISflAE 198
Cdd:TIGR00549  69 S-RFSELNPPPLEITIESEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEKIAHGKPSGIDTATS--TS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  199 EGTAKLIEFSPLRATNVKLPsgAVFVIANScmemnkaatshfnvrvmecrlaakvlakhkglqwdnvlrleevqsklGIS 278
Cdd:TIGR00549 146 GGPVYFEKGEGEFTKLISLD--GYFVIADT-----------------------------------------------GVS 176
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925  279 LEemllvTEDALhpepysreeicrclgislERLRtQILTPNtqDELTFKLYQRAKHVYSEAARVLQfkqvcedapDNAVQ 358
Cdd:TIGR00549 177 GS-----TKEAV------------------ARVR-QLLERF--PELIDSIMDAIGELTLEAKAALQ---------DGDVE 221
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 597436925  359 LLGELMNQSHrSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSL 411
Cdd:TIGR00549 222 SLGELMNINQ-GLLKALGVSHPKLDQLVEIARKAGALGAKLTGAGGGGCMIAL 273
GHMP_kinases_C pfam08544
GHMP kinases C terminal; This family includes homoserine kinases, galactokinases and ...
350-413 8.52e-09

GHMP kinases C terminal; This family includes homoserine kinases, galactokinases and mevalonate kinases.


Pssm-ID: 430063 [Multi-domain]  Cd Length: 85  Bit Score: 52.47  E-value: 8.52e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597436925  350 EDAPDNAVQLLGELMNQSHRSC--RDMYECSCPELDQLVDICRKFGaKGSRLTGAGWGGCTVSLVP 413
Cdd:pfam08544   3 EALLRGDLEELGKLLTESAESLepLLVVGILPPELDELLEALLELG-LGAKLSGSGGGPTVFALFK 67
PRK03926 PRK03926
mevalonate kinase; Provisional
360-415 2.82e-08

mevalonate kinase; Provisional


Pssm-ID: 179677 [Multi-domain]  Cd Length: 302  Bit Score: 55.06  E-value: 2.82e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 597436925 360 LGELMNQSHrSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPAD 415
Cdd:PRK03926 216 LGELMNINQ-GLLDALGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPE 270
COG2605 COG2605
Predicted kinase related to galactokinase and mevalonate kinase [General function prediction ...
330-415 9.02e-04

Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only];


Pssm-ID: 442017 [Multi-domain]  Cd Length: 328  Bit Score: 41.32  E-value: 9.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436925 330 QRAKHVYSEAARVLQFKQVCEDAPD--NAVQ-----LLGELMNQSHRSCRDMYE-CSCPELDQLVDICRKFGAKGSRLTG 401
Cdd:COG2605  205 QVKNVEDGDEATLEALHEMKELALEmkEALLkgdldEFGELLNEGWELKKRLASgISNPAIDEIYELARKAGALGGKLLG 284
                         90
                 ....*....|....
gi 597436925 402 AGWGGCTVSLVPAD 415
Cdd:COG2605  285 AGGGGFLLFYAPPE 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH