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Conserved domains on  [gi|510025462|ref|NP_001265360|]
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complement C1q tumor necrosis factor-related protein 5 precursor [Homo sapiens]

Protein Classification

complement C1q domain-containing protein( domain architecture ID 10448922)

complement C1q domain-containing protein may be involved in the regulation of the inflammatory network

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
 105-232 2.66e-52

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


:

Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 165.54  E-value: 2.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  105 AFSAKRSESRvPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHAT-VYRASLQFDLVKNGESIASFFQFFG 183
Cdd:pfam00386   1 AFSAGRTTGL-TAPNEQPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHITtVDGKSLYVSLVKNGQEVVSFYDQPQ 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 510025462  184 GWpKPASLSGGAMVRLEPEDQVWVQvgVGDYIGIYAS-IKTDSTFSGFLV 232
Cdd:pfam00386  80 KG-SLDVASGSVVLELQRGDEVWLQ--LTGYNGLYYDgSDTDSTFSGFLL 126
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-97 2.87e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 56.45  E-value: 2.87e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510025462  30 GHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:NF038329 144 GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGP 211
 
Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
 105-232 2.66e-52

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 165.54  E-value: 2.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  105 AFSAKRSESRvPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHAT-VYRASLQFDLVKNGESIASFFQFFG 183
Cdd:pfam00386   1 AFSAGRTTGL-TAPNEQPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHITtVDGKSLYVSLVKNGQEVVSFYDQPQ 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 510025462  184 GWpKPASLSGGAMVRLEPEDQVWVQvgVGDYIGIYAS-IKTDSTFSGFLV 232
Cdd:pfam00386  80 KG-SLDVASGSVVLELQRGDEVWLQ--LTGYNGLYYDgSDTDSTFSGFLL 126
C1Q smart00110
Complement component C1q domain; Globular domain found in many collagens and eponymously in ...
 97-235 7.07e-44

Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.


Pssm-ID: 128420  Cd Length: 135  Bit Score: 144.37  E-value: 7.07e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462    97 ECSVPPRSAFSAKRSesRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQFDLVKNGESIA 176
Cdd:smart00110   1 NYKAQPRSAFSVIRS--NRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESKGRNVKVSLMKNGIQVM 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462   177 SFF-QFFGGWPKPAslSGGAMVRLEPEDQVWVQVGVGDYiGIYASIKTDSTFSGFLVYSD 235
Cdd:smart00110  79 STYdEYQKGLYDVA--SGGALLQLRQGDQVWLELPDEKN-GLYAGEYVDSTFSGFLLFPD 135
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-97 2.87e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 56.45  E-value: 2.87e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510025462  30 GHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:NF038329 144 GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGP 211
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-97 6.06e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.52  E-value: 6.06e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510025462  30 GHPGLPGTPGHHGSQGlpgrdgrdgRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:NF038329 120 GEPGPAGPAGPAGEQG---------PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK 178
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 29-95 1.31e-06

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 44.41  E-value: 1.31e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 510025462   29 PGHPGLPGTPGHHGSQGlpgrdgrdgrdgAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPA 95
Cdd:pfam01391   3 PGPPGPPGPPGPPGPPG------------PPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-101 2.05e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 44.90  E-value: 2.05e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 510025462  30 GHPGLPGTPGHHGSQGlpgrdgrdgRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVP 101
Cdd:NF038329 236 GPDGDPGPTGEDGPQG---------PDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP 298
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-94 6.22e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 40.27  E-value: 6.22e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 510025462  30 GHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGP 94
Cdd:NF038329 281 GPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 47-132 3.52e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 37.95  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  47 PGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPT-----GPAG---ECSVPPRSAFSAKRSESRVPPP 118
Cdd:PHA03201  11 PPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRrrprgCPAGvtfSSSAPPRPPLGLDDAPAATPPP 90

                         90
                 ....*....|....
gi 510025462 119 SDAPLPFDRVLVNE 132
Cdd:PHA03201  91 LDWTEFRRRFLVGD 104
 
Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
 105-232 2.66e-52

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 165.54  E-value: 2.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  105 AFSAKRSESRvPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHAT-VYRASLQFDLVKNGESIASFFQFFG 183
Cdd:pfam00386   1 AFSAGRTTGL-TAPNEQPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHITtVDGKSLYVSLVKNGQEVVSFYDQPQ 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 510025462  184 GWpKPASLSGGAMVRLEPEDQVWVQvgVGDYIGIYAS-IKTDSTFSGFLV 232
Cdd:pfam00386  80 KG-SLDVASGSVVLELQRGDEVWLQ--LTGYNGLYYDgSDTDSTFSGFLL 126
C1Q smart00110
Complement component C1q domain; Globular domain found in many collagens and eponymously in ...
 97-235 7.07e-44

Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.


Pssm-ID: 128420  Cd Length: 135  Bit Score: 144.37  E-value: 7.07e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462    97 ECSVPPRSAFSAKRSesRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQFDLVKNGESIA 176
Cdd:smart00110   1 NYKAQPRSAFSVIRS--NRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESKGRNVKVSLMKNGIQVM 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462   177 SFF-QFFGGWPKPAslSGGAMVRLEPEDQVWVQVGVGDYiGIYASIKTDSTFSGFLVYSD 235
Cdd:smart00110  79 STYdEYQKGLYDVA--SGGALLQLRQGDQVWLELPDEKN-GLYAGEYVDSTFSGFLLFPD 135
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-97 2.87e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 56.45  E-value: 2.87e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510025462  30 GHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:NF038329 144 GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGP 211
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-97 6.06e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.52  E-value: 6.06e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510025462  30 GHPGLPGTPGHHGSQGlpgrdgrdgRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:NF038329 120 GEPGPAGPAGPAGEQG---------PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK 178
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 29-95 1.31e-06

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 44.41  E-value: 1.31e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 510025462   29 PGHPGLPGTPGHHGSQGlpgrdgrdgrdgAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPA 95
Cdd:pfam01391   3 PGPPGPPGPPGPPGPPG------------PPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 33-97 1.86e-06

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 44.02  E-value: 1.86e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 510025462   33 GLPGTPGHHGSQGlpgrdgrdgrdgAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGE 97
Cdd:pfam01391   1 GPPGPPGPPGPPG------------PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGA 53
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-101 2.05e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 44.90  E-value: 2.05e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 510025462  30 GHPGLPGTPGHHGSQGlpgrdgrdgRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVP 101
Cdd:NF038329 236 GPDGDPGPTGEDGPQG---------PDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP 298
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 30-94 6.22e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 40.27  E-value: 6.22e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 510025462  30 GHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGP 94
Cdd:NF038329 281 GPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 47-132 3.52e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 37.95  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  47 PGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPT-----GPAG---ECSVPPRSAFSAKRSESRVPPP 118
Cdd:PHA03201  11 PPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRrrprgCPAGvtfSSSAPPRPPLGLDDAPAATPPP 90

                         90
                 ....*....|....
gi 510025462 119 SDAPLPFDRVLVNE 132
Cdd:PHA03201  91 LDWTEFRRRFLVGD 104
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 30-124 3.87e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 38.12  E-value: 3.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  30 GHPGLPgTPGHHGSQGLPGRDGRDGRDGAPGAPGeKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAK 109
Cdd:PRK14959 393 GAATIP-TPGTQGPQGTAPAAGMTPSSAAPATPA-PSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVA 470

                         90
                 ....*....|....*
gi 510025462 110 RSESRVPPPSDAPLP 124
Cdd:PRK14959 471 SASDAPPTLGDPSDT 485
PHA03247 PHA03247
large tegument protein UL36; Provisional
 18-126 4.09e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462   18 PLDDNKIPSLCPgHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKgeggrPGLP-GPRGDPGPRGEAGPAGPTGPAG 96
Cdd:PHA03247 2701 PPPPPPTPEPAP-HALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-----PATPgGPARPARPPTTAGPPAPAPPAA 2774

                          90       100       110
                  ....*....|....*....|....*....|
gi 510025462   97 ECSVPPRSAFSAKRSESRVPPPSdAPLPFD 126
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRES-LPSPWD 2803
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 31-126 5.47e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 37.66  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  31 HPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKR 110
Cdd:PRK07764 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSP 733

                         90
                 ....*....|....*.
gi 510025462 111 SESRVPPPSDAPLPFD 126
Cdd:PRK07764 734 AADDPVPLPPEPDDPP 749
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 29-127 9.19e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 36.89  E-value: 9.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510025462  29 PGHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSA 108
Cdd:PRK07764 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

                         90
                 ....*....|....*....
gi 510025462 109 KRSESRVPPPSDAPLPFDR 127
Cdd:PRK07764 778 PPSEEEEMAEDDAPSMDDE 796
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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