|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
417-982 |
7.80e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.32 E-value: 7.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 417 LEGQLEALSLEASQALK------EKAELQAQLAALSTKLQaqvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM 490
Cdd:COG1196 198 LERQLEPLERQAEKAERyrelkeELKELEAELLLLKLREL---------EAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 491 LEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISS 570
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 571 LQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHL---KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEA 647
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlraAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 648 DMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLT 727
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 728 LTQEALQSREQSLDALQTH-------------YDELQARLGELQGEAASREDTICLLQNEK-----------IILEAALQ 783
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAvligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 863
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 864 QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEghlQSAQKERDEMETHLQSLQFDK 943
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|....*....
gi 289191386 944 EQMVAVTEANEALKKQIEELQQEARKAiteqKQKMRRLG 982
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERL----EREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
395-981 |
2.09e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 2.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 395 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQ-------DSLS 467
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLeelkeelESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 468 SEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQ-----QMTA 542
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 543 LQSQLQQVQLERTTLTSKLKASQAEISSLqsvrqwyQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQ 622
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEEL-------REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 623 QLTEtQHRSMKEKGRIAAQL-------QGIEAD---------MLDQEAAFMQIQEAK-------TMVEEDLQRRLEEFEG 679
Cdd:TIGR02168 511 LLKN-QSGLSGILGVLSELIsvdegyeAAIEAAlggrlqavvVENLNAAKKAIAFLKqnelgrvTFLPLDSIKGTEIQGN 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 680 ERERLQRMADS---------------------------AASLEQQLEQVKLTLL-----------------------QRD 709
Cdd:TIGR02168 590 DREILKNIEGFlgvakdlvkfdpklrkalsyllggvlvVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggsaKTN 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 710 QQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGK 789
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 790 EELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmvEAYRRDATSKDQLISEL 869
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAANL 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 870 KATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAV 949
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670
....*....|....*....|....*....|..
gi 289191386 950 TEANEALKKQIEELQQEARKAITEQKQKMRRL 981
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
365-970 |
2.34e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 365 LQAAAAEHQDQGQEVNGEVRSRRDSIcssVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA 444
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 445 LSTKLQAQvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQR 524
Cdd:COG1196 328 LEEELEEL-------EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 525 SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQM 604
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 605 TQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAfmqiqeaktmVEEDLQRRLEEFEGEReRL 684
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG----------VEAAYEAALEAALAAA-LQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 685 QRMADSAASLEQQLEQVKLTLLQRDQQLEalqqehLDLMKQLTLTQEALQSREQSLDALQTHYD--ELQARLGELQGEAA 762
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAAALARGAIGAAVDLVASDlrEADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 763 SREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIK 842
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 843 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEG-- 920
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvn 783
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 289191386 921 -----HLQSAQKERDEMETHLQSLqfdkeqmvavTEANEALKKQIEELQQEARKA 970
Cdd:COG1196 784 llaieEYEELEERYDFLSEQREDL----------EEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
646-1091 |
2.66e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 646 EADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 725
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEE-LEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 726 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEE 805
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 806 TSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ 885
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEME--------THLQSLQFDKEQMVAV-------- 949
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkaALLLAGLRGLAGAVAVligveaay 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 950 -----TEANEALKKQIEELQQEARKAITEQKQ-KMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAE 1023
Cdd:COG1196 537 eaaleAALAAALQNIVVEDDEVAAAAIEYLKAaKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1024 LGQLRAQGGSSDSSLALH--ERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEVR 1091
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-1089 |
3.17e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.42 E-value: 3.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 401 AETQEEMLQV---LKEkmrLEGQLEALSLEASQALKEKaELQAQLAALSTKLQAQVecSHSSQQRQDSLSSEVDTLKQSC 477
Cdd:TIGR02168 182 ERTRENLDRLediLNE---LERQLKSLERQAEKAERYK-ELKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 478 WDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTL 557
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 558 TSKLKASQAEISSLQSVRQWYQQQL----ALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLEN---VSLSQQLTETQHR 630
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELeeleAELEELESRLEELEEQLETLRSKVAQLELQIASLNneiERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 631 SMKEKGRIAAQLQGI-EADMLDQEAAFMQIQEAKTMVE---EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLL 706
Cdd:TIGR02168 416 RERLQQEIEELLKKLeEAELKELQAELEELEEELEELQeelERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 707 QRDQQLEALQQEHLDLMKQ-------LTLTQEALQSREQ-----------SLDALQTHYDELQARLGELQGEAASREDTI 768
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNqsglsgiLGVLSELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 769 CLLqneKIILEAALQAAKSGKEELDRGARRLEEGTEETSET------------------------LEKLREELAI----- 819
Cdd:TIGR02168 576 LPL---DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvvddldnalelAKKLRPGYRIvtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 820 ---------------KSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 884
Cdd:TIGR02168 653 dlvrpggvitggsakTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 885 QELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQ 964
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 965 QEarkaITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILsRRLQEALAAKEAADAELGQLRAQggssdsslaLHERI 1044
Cdd:TIGR02168 810 AE----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEE---------LESEL 875
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 289191386 1045 QALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDE 1089
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEEL----SEELRELESKRSELRRE 916
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
396-1091 |
8.07e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 8.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 396 LESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQ-------AQLAALSTKLQAQVECSHSSQQRQDSLSS 468
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyalaNEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 469 EVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTAlqsqlq 548
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS------ 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 549 qVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQeaRVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQ 628
Cdd:TIGR02168 398 -LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 629 hRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTM--------------------VEEDLQRRLEEFEGER------E 682
Cdd:TIGR02168 475 -QALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglsgilgvlselisVDEGYEAAIEAALGGRlqavvvE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 683 RLQRMADSAASLEQQlEQVKLTLLQRDQQLEA-LQQEHLDLMKQLTLTQEALQSREQSLDALQ-------------THYD 748
Cdd:TIGR02168 554 NLNAAKKAIAFLKQN-ELGRVTFLPLDSIKGTeIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 749 ELQARLGELQGEAasredTICLLQNEkIILEAALQAAKSGKEELDRGARRL-----EEGTEETSETLEKLREELAIKSGQ 823
Cdd:TIGR02168 633 NALELAKKLRPGY-----RIVTLDGD-LVRPGGVITGGSAKTNSSILERRReieelEEKIEELEEKIAELEKALAELRKE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 824 VEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSR 903
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 904 LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKE----QMVAVTEANEALKKQIEELQQE---ARKAITEQKQ 976
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLEslerRIAATERRLEDLEEQIEELSEDiesLAAEIEELEE 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 977 KMRRLGSDLTSAQKEMKTKhkayENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLA-LHERIQALEAELQavs 1055
Cdd:TIGR02168 867 LIEELESELEALLNERASL----EEALALLRSELEELSEELRELESKRSELRRELEELREKLAqLELRLEGLEVRID--- 939
|
730 740 750
....*....|....*....|....*....|....*.
gi 289191386 1056 hskTLLEKeLQEVIALTSQELEESREKVLELEDEVR 1091
Cdd:TIGR02168 940 ---NLQER-LSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
556-1090 |
9.86e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 9.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 556 TLTSKLKASQAEISSLQsvRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSMKEK 635
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 636 GRIAAQLQGIEAdmldqeaafmqiqeaktmveedlqrrleefegERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEAL 715
Cdd:COG1196 295 AELARLEQDIAR--------------------------------LEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 716 QQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRG 795
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 796 ARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKR 875
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 876 LD--------SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMV 947
Cdd:COG1196 503 YEgflegvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 948 AVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKayENAVGILSRRLQEALAAKEAADAELGQL 1027
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL--EAALRRAVTLAGRLREVTLEGEGGSAGG 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 289191386 1028 RAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEV 1090
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-982 |
2.56e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 345 VNGQEIPADTLGQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSSVS----LESSAAETQEEMLQVLKEKMRLEGQ 420
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleeLESRLEELEEQLETLRSKVAQLELQ 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 421 LEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQrqDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLAS 500
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 501 SNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALqsqlqqvqlerttltSKLKASQAEISSLQSVRQWYQQ 580
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ---------------SGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 581 QLALAqearvrLQGEMAHIQVGQMTQAGL-LEHLK---------LENVSLSQQLTETQHRSMKEKGR-----------IA 639
Cdd:TIGR02168 538 AIEAA------LGGRLQAVVVENLNAAKKaIAFLKqnelgrvtfLPLDSIKGTEIQGNDREILKNIEgflgvakdlvkFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 640 AQLQGIEADMLDQEAAFMQIQEAKTM-VEEDLQRRLEEFEGER-------------------ERLQRMADsaasLEQQLE 699
Cdd:TIGR02168 612 PKLRKALSYLLGGVLVVDDLDNALELaKKLRPGYRIVTLDGDLvrpggvitggsaktnssilERRREIEE----LEEKIE 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 700 QVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILE 779
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 780 AALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVE--AYRR 857
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEdlEEQI 847
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQL-----ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 932
Cdd:TIGR02168 848 EELSEDIEslaaeIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 933 ETHLQSLQFD--------KEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG 982
Cdd:TIGR02168 928 ELRLEGLEVRidnlqerlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
645-1045 |
1.31e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.96 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 645 IEADMLDQEAAFMQIQEAKTMVEEDLQRrLEEFEGERERLQRMADsaasLEQQLEQVKLTLLQRdqqlealqqEHLDLMK 724
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAERYQA----LLKEKREYEGYELLK---------EKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 725 QLTLTQEALQSREQSLDALQTHYDELQARLGELqgeaasredticllqnEKIILEAALQAAKSGKEELDRgarrleegte 804
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEI----------------EQLLEELNKKIKDLGEEEQLR---------- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 805 etsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 884
Cdd:TIGR02169 292 --------VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 885 QELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQ 964
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 965 QEARKAITEQKQKMRRLGSDLTSAQKEmktkHKAYENAVGILSRRLQEALAAKEAADAELGQLR-AQGGSSDSSLALHER 1043
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQE----LYDLKEEYDRVEKELSKLQRELAEAEAQARASEeRVRGGRAVEEVLKAS 519
|
..
gi 289191386 1044 IQ 1045
Cdd:TIGR02169 520 IQ 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
671-989 |
3.13e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 671 QRRLEEfegERERLQRMADSAASLEQQLEqvkltLLQRdqQLEALQQeHLDLMKQLtltqealqsREQSLDALQTHYDEL 750
Cdd:TIGR02168 178 ERKLER---TRENLDRLEDILNELERQLK-----SLER--QAEKAER-YKELKAEL---------RELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 751 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRgarrleeGTEETSETLEKLREELAIKSGQVEHLQQE 830
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE-------EIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 831 TAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQ 910
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 911 VRQHMADLEGHLQSA-----------QKERDEMETHLQSLQfdKEQMVAVTEANEALKKQIEELQQE----------ARK 969
Cdd:TIGR02168 391 LELQIASLNNEIERLearlerledrrERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEElerleealeeLRE 468
|
330 340
....*....|....*....|
gi 289191386 970 AITEQKQKMRRLGSDLTSAQ 989
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQ 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
737-1095 |
4.85e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 4.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 737 EQSLDALQTHYDELQARLGELQGEAAS----REdticlLQNEKIILEAALQAAKsgKEELDRGARRLEEGTEETSETLEK 812
Cdd:COG1196 185 EENLERLEDILGELERQLEPLERQAEKaeryRE-----LKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 813 LREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHG 892
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavTEANEALKKQIEELQQEARKAIT 972
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA---------EELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 973 EQKQKMRRLgsdltsaqkEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLA----LHERIQALE 1048
Cdd:COG1196 409 EEALLERLE---------RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAelleEAALLEAAL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 289191386 1049 AELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEVRPGHL 1095
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
633-900 |
7.34e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 7.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 633 KEKGRIAAQLQGIEADMLDQEAAFMQI-QEAKTMVEED---LQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQR 708
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEqlrVKEKIGELEAEIASLER---SIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 709 DQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSG 788
Cdd:TIGR02169 328 EAEIDKLLAEIEEL-------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 789 KEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlISE 868
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE-------LYD 473
|
250 260 270
....*....|....*....|....*....|..
gi 289191386 869 LKATRKRLDSELKELRQELMQVHGEKRTAEAE 900
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
510-1091 |
1.92e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 510 EQYQRLMAKVEDMQRSMLSKDntVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSvrqwyqqqlalaqeAR 589
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL--------------EV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 590 VRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLtetqHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 669
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERL----ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 670 LQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDE 749
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 750 lqARLGELQGEAASREDTICLLQNEKIILEAALqaaksgkEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQ 829
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEAL-------EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 830 ETAALKKQMQKiKEQF------LQQKVMVEA-YR----------------RDATSKDQLISELK--ATRKRLDSELKELR 884
Cdd:TIGR02168 504 FSEGVKALLKN-QSGLsgilgvLSELISVDEgYEaaieaalggrlqavvvENLNAAKKAIAFLKqnELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 885 QELMQVHGEKRTAEAE-----LSRLHREVAQVRQHMADLEGH------LQSAQKERDEM--------------------- 932
Cdd:TIGR02168 583 GTEIQGNDREILKNIEgflgvAKDLVKFDPKLRKALSYLLGGvlvvddLDNALELAKKLrpgyrivtldgdlvrpggvit 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 933 ----ETHLQSLQFDKE------QMVAVTEANEALKKQIEELQQEARkAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENA 1002
Cdd:TIGR02168 663 ggsaKTNSSILERRREieeleeKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1003 VGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHER-IQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEE 1078
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAeIEELEAQIEQLKEELKALREaldELRAELTLLNEEAAN 821
|
650
....*....|...
gi 289191386 1079 SREKVLELEDEVR 1091
Cdd:TIGR02168 822 LRERLESLERRIA 834
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
618-973 |
5.12e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 5.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 618 VSLSQQLTETQHR--SMK-EKGRIAAQLQGIEADMldqEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRMAdsaASL 694
Cdd:TIGR02169 670 RSEPAELQRLRERleGLKrELSSLQSELRRIENRL---DELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERL---EEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSL-----DALQTHYDELQARLGELQGEAASREDTIC 769
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 770 LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQK 849
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 850 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKER 929
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 289191386 930 DEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITE 973
Cdd:TIGR02169 982 EEVLKRLDEL---KEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-743 |
2.13e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 393 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDT 472
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 473 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSkdntvhdLRQQMTALQSQLQQVQL 552
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-------LREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 553 ERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQ--------- 623
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAlallrsele 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 624 -LTETQHRSMKEKGRIAAQLQG----IEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERL----QRMADSAASL 694
Cdd:TIGR02168 898 eLSEELRELESKRSELRRELEElrekLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeddeEEARRRLKRL 977
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 289191386 695 EQQLEQ---VKLTLLqrdQQLEALQQEHLDLMKQLTLTQEALQSREQSLDAL 743
Cdd:TIGR02168 978 ENKIKElgpVNLAAI---EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
630-1087 |
2.30e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 630 RSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQqLEQVKLTLLQRD 709
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE-LEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 710 QQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQ---THYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAK 786
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKELKekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 787 SGKEELDRgarrleegteeTSETLEKLREELAIKSGQVEhLQQETAALKKQMQKIKEQFLQQKV-----MVEAYRRDATS 861
Cdd:PRK03918 335 EKEERLEE-----------LKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPeklekELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 862 KDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-----------EAEL-SRLHREVAQVRQHMADLEGHLQSAQKER 929
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelteehRKELlEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 930 DEMETHLQS---LQFDKEQMVAVTEANEALKK-QIEELQQEARKAiTEQKQKMRRLGSDLTSAQKEMKtKHKAYENAVGI 1005
Cdd:PRK03918 483 RELEKVLKKeseLIKLKELAEQLKELEEKLKKyNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1006 LSRRLQEALAAKEAADaelGQLRAQGGSSDSSLalHERIQALEA------ELQAVSHSKTLLEKELQ----------EVI 1069
Cdd:PRK03918 561 LEKKLDELEEELAELL---KELEELGFESVEEL--EERLKELEPfyneylELKDAEKELEREEKELKkleeeldkafEEL 635
|
490
....*....|....*...
gi 289191386 1070 ALTSQELEESREKVLELE 1087
Cdd:PRK03918 636 AETEKRLEELRKELEELE 653
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
464-1005 |
2.50e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.94 E-value: 2.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 464 DSLSSEVDTLKqscwDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLMAKVEDMQ-----RSMLSKDN---TVHD 535
Cdd:COG4913 228 DALVEHFDDLE----RAHEALEDAREQIEL-----------LEPIRELAERYAAARERLAeleylRAALRLWFaqrRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 536 LRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQsvRQWYQ---QQLALAQEARVRLQGEMAHIQVGQMTQAGLLEH 612
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGnggDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 613 LKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERL-QRMADSA 691
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIpARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 692 ASLEQQLE-------------QVK------------------LTLLQRDQQ----LEALQQEHLdlmkQLTLTQEALQSR 736
Cdd:COG4913 447 DALAEALGldeaelpfvgeliEVRpeeerwrgaiervlggfaLTLLVPPEHyaaaLRWVNRLHL----RGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 737 EQSLDALQTHYDELQARL--------GELQGEAASREDTIC------LLQNEKIILEAALQAAKSGKEELD--RGARRLE 800
Cdd:COG4913 523 LPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCvdspeeLRRHPRAITRAGQVKGNGTRHEKDdrRRIRSRY 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 801 EGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQF--LQQKVMVEAYRRDATSKDQLISELKATRKRLD- 877
Cdd:COG4913 603 VLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERReaLQRLAEYSWDEIDVASAEREIAELEAELERLDa 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 878 --SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS-LQFDKEQMVavteANE 954
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLeLRALLEERF----AAA 758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 289191386 955 ALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 1005
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
688-928 |
3.34e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 688 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASredt 767
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 768 icllqnekiiLEAALQAAksgKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQ 847
Cdd:COG4942 95 ----------LRAELEAQ---KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 848 QKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQK 927
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 289191386 928 E 928
Cdd:COG4942 242 R 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
649-936 |
4.68e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 4.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 649 MLDQEAAFMQIQEAKTMVEE--DLQRRLEEFEGERERLQRMADSAASLEQQLEQV-KLTLLQRDQQLEALQQEHLDLMKQ 725
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDDleRAHEALEDAREQIELLEPIRELAERYAAARERLaELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 726 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEaasredticllqnekiILEAALQAAKSGKEELDRgarrleegtee 805
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQ----------------IRGNGGDRLEQLEREIER----------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 806 tsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKvmveayrrdatskdqliSELKATRKRLDSELKELRQ 885
Cdd:COG4913 350 -------LERELEERERRRARLEALLAALGLPLPASAEEFAALR-----------------AEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 289191386 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAqkeRDEMETHL 936
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEAL 453
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
408-1002 |
4.78e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.22 E-value: 4.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 408 LQVLKEKMRLEGQLEALSLEAS----------QALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSC 477
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQlltlctpcmpDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 478 WDLERAMTDLQNMLEAknASLASSNNDLQVAEEQYQRLMAKVEdmqrsmlskdntvhDLRQQMTALQSQLQQVQLERTTL 557
Cdd:TIGR00618 263 KQLRARIEELRAQEAV--LEETQERINRARKAAPLAAHIKAVT--------------QIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 558 TSKLKASQAEISSLQSVRQWYQQqlALAQEARVRLQGEmahiqvgqmTQAGLLEHlklenvsLSQQLTETQH-RSMKEKG 636
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQT--LHSQEIHIRDAHE---------VATSIREI-------SCQQHTLTQHiHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 637 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQ 716
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR---YAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 717 QEhLDLMKQLTLTQEALQSREQSLDALQTHydelqaRLGELQGEAASREDTiCLLQNEKIILEAALQAAKSGKEELDRGA 796
Cdd:TIGR00618 466 QS-LKEREQQLQTKEQIHLQETRKKAVVLA------RLLELQEEPCPLCGS-CIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 797 RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQ---FLQQKVMVEAY-RRDATSKDQLISELKAT 872
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDipnLQNITVRLQDLtEKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 873 RKRLDSEL--KELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADL------EGHLQSAQKERDEMETHLQSLQFDKE 944
Cdd:TIGR00618 618 LRKLQPEQdlQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQLTYWKE 697
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 289191386 945 Q-------MVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENA 1002
Cdd:TIGR00618 698 MlaqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEA 762
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
402-1090 |
6.96e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 6.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 402 ETQEEMLQVLKEKMRLEGQLEALSLEAsqALKEKAELQAQLAALS---TKLQAQVecshssQQRQDSLSSEVDTLKQSCW 478
Cdd:TIGR02169 208 EKAERYQALLKEKREYEGYELLKEKEA--LERQKEAIERQLASLEeelEKLTEEI------SELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 479 DLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMakvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLT 558
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL---EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 559 SKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiqvgqmtqaglLEHLKLENVSLSQqlteTQHRSMKEKGRI 638
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK--------------LEKLKREINELKR----ELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 639 AAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQE 718
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAADLSKY---EQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 719 hldlMKQLTLTQEALQSREQSLDALQTHYDE-------LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 791
Cdd:TIGR02169 492 ----LAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 792 LDRGARRLE----EGTEETSETLEKLREELAI----------------------KSGQVEHLqqETAalKKQMQKIK--- 842
Cdd:TIGR02169 568 KRRKAGRATflplNKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgDTLVVEDI--EAA--RRLMGKYRmvt 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 843 ---EQF--------------------LQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEA 899
Cdd:TIGR02169 644 legELFeksgamtggsraprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 900 ELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMvavTEANEALKKQIEELQ--------QEARKAI 971
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL---EEDLHKLEEALNDLEarlshsriPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 972 TEQKQKMRRLGSDLTSAQKEMKTKHKAYEnavgILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLA-LHERIQALEAE 1050
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKE----YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEeLEEELEELEAA 876
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 289191386 1051 LQAVSHSKTLLEKELQEVIAltsqELEESREKVLELEDEV 1090
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEA----QLRELERKIEELEAQI 912
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
787-1091 |
8.34e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 8.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 787 SGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETA-ALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL 865
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 866 ---ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRL-HREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQ- 940
Cdd:TIGR02169 243 erqLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEe 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 941 ---FDKEQMVAVTEANEALKKQIEELQQEARK---AITEQKQKMRRLGSDLTSAQKEMKT---KHKAYENAVGILSRRLQ 1011
Cdd:TIGR02169 323 rlaKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1012 EALAAKEAADAELGQLRAQGGSSDSSLA-LHERIQALEAELQAVSHSKTLLEKELQEVIALTS---QELEESREKVLELE 1087
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAgIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSkyeQELYDLKEEYDRVE 482
|
....
gi 289191386 1088 DEVR 1091
Cdd:TIGR02169 483 KELS 486
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
637-1090 |
1.67e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 637 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQ 716
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 717 QEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqNEKIILEAALQAAKSGKEELDRGa 796
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV----EEAEALLEAGKCPECGQPVEGSP- 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 797 rrleegteetsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD------QLISELK 870
Cdd:PRK02224 466 ----------------HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEErredleELIAERR 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 871 ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEThlqslqfdkeqMVAVT 950
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-----------IRTLL 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 951 EANEALKKQIEELQqEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKayENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:PRK02224 599 AAIADAEDEIERLR-EKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1031 GGSsdsslaLHERIQALEAELQavshsktllekelqevialtsqELEESREKVLELEDEV 1090
Cdd:PRK02224 676 RDD------LQAEIGAVENELE----------------------ELEELRERREALENRV 707
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
378-980 |
4.64e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 4.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 378 EVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAqLAALSTKLQAQVEcsh 457
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELE--- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 458 ssqqrqdSLSSEVDTLKQSCWDLERAMTDLQ---NMLEAKNASLassnNDLQVAEEQYQRL---MAKVEDMQRSMLSKDN 531
Cdd:PRK03918 249 -------SLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKEL----KELKEKAEEYIKLsefYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 532 TVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARvRLQGEMAHIQVgqmtqagllE 611
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP---------E 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 612 HLKLENVSLSQQLTETQHRSMKEKGRIAaQLQGIEADMldqEAAFMQIQEAKT--------MVEEDLQRRLEEFEGERER 683
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIG-ELKKEIKEL---KKAIEELKKAKGkcpvcgreLTEEHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 684 LQRMADSAASLEQQLEQVKL---TLLQRDQQLEALQQehldLMKQLTLTQEALQSRE-QSLDALQTHYDELQARLGELQG 759
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELReleKVLKKESELIKLKE----LAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 760 EAASREDTI---CLLQNEKIILEAALQAAKSGKEELdrgarrleegteetsetlEKLREELAIKSgqVEHLQQETaalkK 836
Cdd:PRK03918 540 EIKSLKKELeklEELKKKLAELEKKLDELEEELAEL------------------LKELEELGFES--VEELEERL----K 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 837 QMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRL---DSELKELRQELMQVhgEKRTAEAELSRLHREVAQVRQ 913
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELaetEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSR 673
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289191386 914 HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELqQEARKAITEQKQKMRR 980
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
397-1004 |
5.05e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 397 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQS 476
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 477 CWDLERAMTDLQNMLEAKNASLASSNNDLQVA-EEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTalqsqlqQVQLERT 555
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQAENARLEMHFKlKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQIT-------EKENKMK 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 556 TLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQM----TQAGLLEHLKLENVSLSQqLTETQHRS 631
Cdd:pfam05483 258 DLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQrsmsTQKALEEDLQIATKTICQ-LTEEKEAQ 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 632 MKEKGRIAAQ----LQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKlTLLQ 707
Cdd:pfam05483 337 MEELNKAKAAhsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELK-KILA 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 708 RDQQLealqqehLDLMKQLTLTQEALQSREQSLDALqthydeLQARLGELQGeaasredticllqnekiiLEAALQAAKS 787
Cdd:pfam05483 416 EDEKL-------LDEKKQFEKIAEELKGKEQELIFL------LQAREKEIHD------------------LEIQLTAIKT 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 788 GKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlIS 867
Cdd:pfam05483 465 SEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQ-------IE 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 868 ELKATRKRLDSELKELRQELMQVHGEKR----TAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdk 943
Cdd:pfam05483 538 NLEEKEMNLRDELESVREEFIQKGDEVKckldKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH--- 614
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289191386 944 EQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVG 1004
Cdd:pfam05483 615 QENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLE 675
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
397-775 |
6.20e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 6.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 397 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTK---LQAQVECSHSSQQRQDSLSSEVDTL 473
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 474 KQscwDLERAMTDLQNMLEaknaslassnNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 553
Cdd:COG4717 176 QE---ELEELLEQLSLATE----------EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 554 RT--------------------------TLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 607
Cdd:COG4717 243 ERlkearlllliaaallallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 608 GLLEHLKLENvSLSQQLTETQHRSMKEKGRIAAQLQGIEADmLDQEAAFMQIQE----AKTMVEEDLQRRLEEFEGERER 683
Cdd:COG4717 323 ELLAALGLPP-DLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAAllaeAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 684 LQRMADSAASLEQQL------------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ--SREQSLDALQTHYDE 749
Cdd:COG4717 401 KEELEELEEQLEELLgeleellealdeEELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEE 480
|
410 420
....*....|....*....|....*.
gi 289191386 750 LQARLGELQGEAASREDTICLLQNEK 775
Cdd:COG4717 481 LKAELRELAEEWAALKLALELLEEAR 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
402-1003 |
6.85e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 6.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 402 ETQEEMLQVLKEKMRLEgQLEALSLEASQALKEKAELQAQLAALstKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLE 481
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 482 RAMTDLQNML-EAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRsmlskdntvhDLRQQMTALQSQLQQVQLERTTLTSK 560
Cdd:COG4913 316 ARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERER----------RRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 561 LKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAhiqvgqmtqagllehlklenvSLSQQLTETQHRsmkeKGRIAA 640
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---------------------ELEAEIASLERR----KSNIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 641 QLQgieaDMLDQeaafmqIQEAKTMVEEDLQrrleeFEGE------RERLQRMAdsaasLEQQLEQVKLTLLQRDQQ--- 711
Cdd:COG4913 441 RLL----ALRDA------LAEALGLDEAELP-----FVGElievrpEEERWRGA-----IERVLGGFALTLLVPPEHyaa 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 712 -LEALQQEHLdlmkQLTLTQEALQSREQSLDALQTHYDELQARL--------GELQGEAASREDTICL-----LQNEkii 777
Cdd:COG4913 501 aLRWVNRLHL----RGRLVYERVRTGLPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCVdspeeLRRH--- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 778 lEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRR 857
Cdd:COG4913 574 -PRAITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQLIsELKATRKRLDselkELRQELMQVhgekRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQ 937
Cdd:COG4913 653 LAEYSWDEI-DVASAEREIA----ELEAELERL----DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289191386 938 SLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1003
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
569-987 |
7.32e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.88 E-value: 7.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 569 SSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQmtqagllEHLKLENVSLSQQLTETQHrSMKEKGRIAAQLQGIE 646
Cdd:COG3096 286 RALELRRELFgaRRQLAEEQYRLVEMARELEELSARE-------SDLEQDYQAASDHLNLVQT-ALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 647 ADMLDQEAAFMQIQEAktmvEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQehldlmkql 726
Cdd:COG3096 358 ELTERLEEQEEVVEEA----AEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEK--------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 727 tlTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGArrleegteET 806
Cdd:COG3096 425 --ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQ--------AW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 807 SETLEKLRE--ELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL---ISELKATRKRLDSELK 881
Cdd:COG3096 495 QTARELLRRyrSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 882 ELRQELMQVHGEKRTAEAELSRLH------REVAQVRQHMADLEG-HLQSAQKERDEMET---HLQSLQFDKEQMVavtE 951
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAarapawLAAQDALERLREQSGeALADSQEVTAAMQQlleREREATVERDELA---A 651
|
410 420 430
....*....|....*....|....*....|....*.
gi 289191386 952 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTS 987
Cdd:COG3096 652 RKQALESQIERLSQPGGAEDPRLLALAERLGGVLLS 687
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
669-1090 |
8.12e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 669 DLQRRLEEFEGERERLQRMADSAASLEQQLEQvkltllqRDQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYD 748
Cdd:PRK02224 217 ELDEEIERYEEQREQARETRDEADEVLEEHEE-------RREELETLEAEIEDL-------RETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 749 ELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQ 828
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 829 QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREV 908
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 909 AQVRQHMA---------DLEG--HLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALK----------------KQIE 961
Cdd:PRK02224 443 EEAEALLEagkcpecgqPVEGspHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlveaedrierleerrEDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 962 ELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAyenavgilSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALH 1041
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREA--------AAEAEEEAEEAREEVAELNSKLAELKERIESLERI 594
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 289191386 1042 ERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEV 1090
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
535-765 |
1.18e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 535 DLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmtqagllEHLK 614
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----------AELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 615 LENVSLSQQLTETQhrSMKEKGRIAAQLQGieADMLDQEAAFMQIQEaktmVEEDLQRRLEEFEGERERLQRMADSAASL 694
Cdd:COG4942 101 AQKEELAELLRALY--RLGRQPPLALLLSP--EDFLDAVRRLQYLKY----LAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289191386 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL---EKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
400-1030 |
1.71e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 400 AAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALStKLQAQVEcshsSQQRQDSLSSEVDTLKQSCWD 479
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE-ETQERIN----RARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 480 LERAMTDLQNM------LEAKNASLASSNNDLQVAEEQYQRLMAKvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 553
Cdd:TIGR00618 309 AQRIHTELQSKmrsrakLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 554 RTTLTSKLKASQAEISSLQSVRqwyQQQLALAQEARVrLQGEMAHIQVGQMTQAGLLEHLKL--ENVSLSQQLTETQHRS 631
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQ---ATIDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAaiTCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 632 MKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQ 711
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 712 LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 791
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 792 ldrgARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETaaLKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKA 871
Cdd:TIGR00618 624 ----EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER--VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 872 TRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQvrqhmaDLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTE 951
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAA------REDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 952 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
412-1002 |
2.74e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 412 KEKMRLEGQLEALSLEASQALKEKAELQAQLAALStkLQAQVECSHS----SQQRQDSLSSEVDTLKQSCW---DLERAM 484
Cdd:TIGR00606 319 RELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQ--LQADRHQEHIrardSLIQSLATRLELDGFERGPFserQIKNFH 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 485 TDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDmqrSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSK---- 560
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRD---EKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSsdri 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 561 LKASQAEISSLQSVRQWYQQQLALAQEARVR-LQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSMKEKgria 639
Cdd:TIGR00606 474 LELDQELRKAERELSKAEKNSLTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDE---- 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 640 aQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEH 719
Cdd:TIGR00606 550 -QIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 720 LDLMkqltltqeALQSREQSLDALQTHYDELQARLGELQG----------EAASREDTICLLQNEKIILEAALQAAKSGK 789
Cdd:TIGR00606 629 FDVC--------GSQDEESDLERLKEEIEKSSKQRAMLAGatavysqfitQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 790 EELDRGARRLEEGTEETSETLEKLREE-----------LAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAY--- 855
Cdd:TIGR00606 701 QSKLRLAPDKLKSTESELKKKEKRRDEmlglapgrqsiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTImpe 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 856 -------RRDATSKDQLISELKATRKRLDSELKELR-----QELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQ 923
Cdd:TIGR00606 781 eesakvcLTDVTIMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 924 SAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENA 1002
Cdd:TIGR00606 861 HLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
486-993 |
2.92e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.73 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 486 DLQNMLEAKNaSLASSNndLQVAEEQYQRLMAKVED----MQRSMLSKDNTVHDLR-------QQMTALQSQLQQVQLER 554
Cdd:pfam05483 268 DKANQLEEKT-KLQDEN--LKELIEKKDHLTKELEDikmsLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 555 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAH--IQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 632
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKksSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 633 KEKGRIAAQLQGIEADML------DQEAAFMQIQ-EAKTMVEEDLQRRLEEF--EGERERLQRMADSAASLEQQLEQVKL 703
Cdd:pfam05483 425 KQFEKIAEELKGKEQELIfllqarEKEIHDLEIQlTAIKTSEEHYLKEVEDLktELEKEKLKNIELTAHCDKLLLENKEL 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 704 TllqrdqqlealqQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEkiiLEAALQ 783
Cdd:pfam05483 505 T------------QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKLD 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 863
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 864 QLISELKATRKRlDSELKELRQELMQVHGEKRTAEA-ELSRLHREVAQVRQH-----MADLEGHLQSAQKERDEMETHLq 937
Cdd:pfam05483 650 QKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHkiaemVALMEKHKHQYDKIIEERDSEL- 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289191386 938 SLQFDKEQmvAVTEANEALKKQIEELQQE---ARKAI---TEQKQKMRRLGSDLTSAQKEMK 993
Cdd:pfam05483 728 GLYKNKEQ--EQSSAKAALEIELSNIKAEllsLKKQLeieKEEKEKLKMEAKENTAILKDKK 787
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
365-963 |
3.16e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 365 LQAAAAEHQDQGQEVNGEVRSRRDSICSSVSlESSAAETQEemLQVLKEKM-RLEGQLEALSLEASQALKEKAE------ 437
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWK-EKRDELNGE--LSAADAAVaKDRSELEALEDQHGAFLDADIEtaaadq 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 438 -----LQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQY 512
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 513 ------QRLMAKVEDMQ--------RSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWY 578
Cdd:pfam12128 425 reqleaGKLEFNEEEYRlksrlgelKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQA 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 579 QQQLALAQEARVRLQGEMAHIQVGQMTQAG-LLEHLKLENVSLSQQL-----TETQHRSMKEKGRIAAQLQG---IEADM 649
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFPQAGtLLHFLRKEAPDWEQSIgkvisPELLHRTDLDPEVWDGSVGGelnLYGVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 650 LDQEAafMQIQEAKTMvEEDLQRRLEEFEgerERLQRMADSAASLEQQLEQV--------------KLTLLQRDQQLEAL 715
Cdd:pfam12128 585 LDLKR--IDVPEWAAS-EEELRERLDKAE---EALQSAREKQAAAEEQLVQAngelekasreetfaRTALKNARLDLRRL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 716 ----QQEHLDLMKQLTLTQEALQSREQSLDALQTHYD-ELQARLGELQGEaaSREDTICLLQNEKII---LEAALQAAKS 787
Cdd:pfam12128 659 fdekQSEKDKKNKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQ--KREARTEKQAYWQVVegaLDAQLALLKA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 788 GKEELDRGARRLEEGTEETSETLEKLR----EELAIKSGQVEHLQQETAALKKQMQKIKE--QFLQQKVMVEAYRRDATS 861
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfDWYQETWLQRRPRLATQL 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 862 KD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL 939
Cdd:pfam12128 817 SNieRAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE 896
|
650 660
....*....|....*....|....
gi 289191386 940 QFDKEQMVAVteanEALKKQIEEL 963
Cdd:pfam12128 897 DLKLKRDYLS----ESVKKYVEHF 916
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
863-1010 |
3.68e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 52.62 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 863 DQLISELKATRKRLDSELKELRQE-------LMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERD----- 930
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDElaalearLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 931 -EMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR 1009
Cdd:COG1579 96 kEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
.
gi 289191386 1010 L 1010
Cdd:COG1579 176 L 176
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
565-1052 |
5.02e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 565 QAEISSLQSVRQWYQQQLALAQEARV-RLQGEMAHIQVGQMTQAGL---LEHLKLENVSLSQQLTETQhrsmKEKGRIAA 640
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLeaeLEELRAELARLEAELERLE----ARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 641 QLQGIEAdmldqeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHl 720
Cdd:COG4913 324 ELDELEA----------QIRGNGGDRLEQLEREIERLERELEERER---RRARLEALLAALGLPLPASAEEFAALRAEA- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 721 dlmkqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKsgkeeldrgarrle 800
Cdd:COG4913 390 ---------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR-------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 801 egteetsetlEKLREELAIKSGQV-----------------------------------EHLQQETAALKKQMQKIKEQF 845
Cdd:COG4913 447 ----------DALAEALGLDEAELpfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVY 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 846 LQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSEL------------KELRQELM------QVHGEKR-------- 895
Cdd:COG4913 517 ERVRTGLPDPERPRLDPDSLAGKLDFKphpfRAWLEAELgrrfdyvcvdspEELRRHPRaitragQVKGNGTrhekddrr 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 896 ----------TAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQ------FD--------------KEQ 945
Cdd:COG4913 597 rirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDeidvasaereiaelEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 946 MVAVTEAN---EALKKQIEELQQE---ARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGIlsrrlqEALAAKEA 1019
Cdd:COG4913 677 LERLDASSddlAALEEQLEELEAEleeLEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL------ARLELRAL 750
|
570 580 590
....*....|....*....|....*....|...
gi 289191386 1020 ADAELGQLRAQGGSSDSSLALHERIQALEAELQ 1052
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLN 783
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
554-970 |
5.07e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 554 RTTLTSKLKASQAEISSLQ-SVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenvSLSQQLTETQHRSM 632
Cdd:COG4717 44 RAMLLERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 633 KekgriAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRMADSAASLEQQLEQ--------VKLT 704
Cdd:COG4717 120 K-----LEKLLQLLPLYQELEALEAELAELPERLEE-LEERLEELRELEEELEELEAELAELQEELEElleqlslaTEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 705 LLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ---------------ARLGELQGEAASREDTIC 769
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleerlkearlllliaAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 770 ------------------LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQET 831
Cdd:COG4717 274 tiagvlflvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 832 AALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKR--LDSELKELRQELMQVHGEKRT--AEAELSRLHRE 907
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYqeLKEELEELEEQLEELLGELEEllEALDEEELEEE 433
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 289191386 908 VAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEAnEALKKQIEELQQEARKA 970
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL-EELKAELRELAEEWAAL 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
395-912 |
5.66e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 395 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALST---KLQAQVECSHSSQ----------- 460
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKeklNIQKNIDKIKNKLlklelllsnlk 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 461 ---QRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLR 537
Cdd:TIGR04523 208 kkiQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 538 QQMTALQSQLQQVQLERTT-LTSKLKAsqaEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGqmtqaglLEHLKLE 616
Cdd:TIGR04523 288 KQLNQLKSEISDLNNQKEQdWNKELKS---ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE-------LTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 617 NVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTmVEEDLQRRLEEFEGERERLQR---------- 686
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK-LNQQKDEQIKKLQQEKELLEKeierlketii 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 687 --------MADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 758
Cdd:TIGR04523 437 knnseikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 759 GEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLeegteetsetleKLREELAIKSGQVEHLQQETAALKKQM 838
Cdd:TIGR04523 517 KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE------------NLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 289191386 839 QKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVR 912
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
671-991 |
7.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 7.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 671 QRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQ----------------EHLDLMKQLTLTQEALQ 734
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaereiaELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 735 SREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLR 814
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 815 EELaikSGQVEHLQQETAALKKQMQKIKEQFLQQkvmveaYRRDATSKDQLISELKATRKRLD----SELKELRQELMQV 890
Cdd:COG4913 769 ENL---EERIDALRARLNRAEEELERAMRAFNRE------WPAETADLDADLESLPEYLALLDrleeDGLPEYEERFKEL 839
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 891 hgEKRTAEAEL----SRLHREVAQVRQHMADLEGHLQSAQKERDemeTHLQsLQFDKEQMVAVTEANEALKKQIEELQQE 966
Cdd:COG4913 840 --LNENSIEFVadllSKLRRAIREIKERIDPLNDSLKRIPFGPG---RYLR-LEARPRPDPEVREFRQELRAVTSGASLF 913
|
330 340
....*....|....*....|....*
gi 289191386 967 ARKAITEQKQKMRRLGSDLTSAQKE 991
Cdd:COG4913 914 DEELSEARFAALKRLIERLRSEEEE 938
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
461-975 |
1.02e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 461 QRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQM 540
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 541 TALQSQLQQVQlertTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmTQaglLEHLKLENVSL 620
Cdd:TIGR04523 197 LKLELLLSNLK----KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----TQ---LNQLKDEQNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 621 SQQLTETQHRSMKEKGRIA---AQLQGIEADMLD--QEAAFMQIQEAKTMVEeDLQRRLEEFEGE----RERLQRMADSA 691
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKeleKQLNQLKSEISDlnNQKEQDWNKELKSELK-NQEKKLEEIQNQisqnNKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 692 ASLEQQLEQVKLTLLQRDQQLEALQ----------QEHLDLMKQLTLTQEALQSR-----------EQSLDALQTHYDEL 750
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQneieklkkenQSYKQEIKNLESQINDLESKiqnqeklnqqkDEQIKKLQQEKELL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 751 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE 830
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 831 TAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQElmqvhGEKRTAEAELSRLHREvaq 910
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE-----KEIDEKNKEIEELKQT--- 576
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289191386 911 vrqhmadlEGHLQSAQKERDEMETHLQSLQFD-KEQMVAVTEANEALKKQIEELQQEARKAITEQK 975
Cdd:TIGR04523 577 --------QKSLKKKQEEKQELIDQKEKEKKDlIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
670-1001 |
1.43e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 670 LQRRLEEFEGERERLQrmaDSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDE 749
Cdd:TIGR04523 216 LESQISELKKQNNQLK---DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 750 LQARLGELQGEAAsrEDTICLL-------QNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSG 822
Cdd:TIGR04523 293 LKSEISDLNNQKE--QDWNKELkselknqEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 823 QVEHLQQETAALKKQMQKIKEQflqqkvmveayrrdatskdqlISELKATRKRLDSELKELRQELMQVHGEKRTAEAELS 902
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQ---------------------INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 903 RLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEAR------KAITEQKQ 976
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL---ETQLKVLSRSINKIKQNLEQKQKELKskekelKKLNEEKK 506
|
330 340
....*....|....*....|....*
gi 289191386 977 KMRRLGSDLTSAQKEMKTKHKAYEN 1001
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLES 531
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
510-1084 |
1.91e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 510 EQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEAR 589
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 590 VRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQltetqhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 669
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRA---------RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 670 LQRRLE------EFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHlDLMKQLTLTQEALQSREQ---SL 740
Cdd:TIGR00618 327 LMKRAAhvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKeldIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 741 DALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAA----LQAAKSGKEELDRGARRLEEGTEETSETLEKLREE 816
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAitctAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 817 LAIKS--GQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEK 894
Cdd:TIGR00618 486 TRKKAvvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 895 RTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEALKKQIEELQQEARKAITEQ 974
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA----------CEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 975 kQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSD------SSLALHERIQALE 1048
Cdd:TIGR00618 636 -QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWkemlaqCQTLLRELETHIE 714
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 289191386 1049 A------ELQAVSHSKTLLEKELQEVIALTSQELEESREKVL 1084
Cdd:TIGR00618 715 EydrefnEIENASSSLGSDLAAREDALNQSLKELMHQARTVL 756
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
374-1067 |
1.94e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 374 DQGQEVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRlegqlealslEASQALKEKAELQAQLAAL-STKLQAQ 452
Cdd:TIGR00606 213 KQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLK----------EIEHNLSKIMKLDNEIKALkSRKKQME 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 453 VECSHSSQQRQDSLSSEVDTLKQ-------SCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRS 525
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDlyhnhqrTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 526 MLSKDNTVHDL--RQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAhiqvgq 603
Cdd:TIGR00606 363 IRARDSLIQSLatRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK------ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 604 mtqaGLLEHLKLENVSLSQQLTETQHrsmkekgrIAAQLQGIEADMLDqeaaFMQIQEAKTMVEEDLQRRLEEFEGERER 683
Cdd:TIGR00606 437 ----GLGRTIELKKEILEKKQEELKF--------VIKELQQLEGSSDR----ILELDQELRKAERELSKAEKNSLTETLK 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 684 LQRMadsaaSLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAaS 763
Cdd:TIGR00606 501 KEVK-----SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK-Q 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 764 REDTICLLQNEKIILEAALQaaksgkeeldrgarrleegteetsetleKLREELAIKSGQVEHLQQETAALKKQMQKIKE 843
Cdd:TIGR00606 575 LEDWLHSKSKEINQTRDRLA----------------------------KLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 844 QFLqqkvmveayrrDATSKDQLISELKATRKRLDSELKEL----------RQELMQVHGEKRTAEAELSRLHREVAQVRQ 913
Cdd:TIGR00606 627 KLF-----------DVCGSQDEESDLERLKEEIEKSSKQRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 914 HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMK 993
Cdd:TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 994 TKHKAYENAVGILSRR--LQEALAAKEAADAELGQLRAQGGSSDSSLA---LHERIQALEAELQAVSHSKTLLEKELQE 1067
Cdd:TIGR00606 776 TIMPEEESAKVCLTDVtiMERFQMELKDVERKIAQQAAKLQGSDLDRTvqqVNQEKQEKQHELDTVVSKIELNRKLIQD 854
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
542-787 |
2.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 542 ALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLS 621
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 622 QQLTETQHRsmkekgrIAAQLQgiEADMLDQEAAFMQIQEAKTMveEDLQRRLEEFEGERERLQRMADSAASLEQQLEQV 701
Cdd:COG4942 97 AELEAQKEE-------LAELLR--ALYRLGRQPPLALLLSPEDF--LDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 702 KLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqnEKIILEAA 781
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALI-----ARLEAEAA 237
|
....*.
gi 289191386 782 LQAAKS 787
Cdd:COG4942 238 AAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-607 |
2.60e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 391 CSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEV 470
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 471 DTLKQscwDLERAMTDLQNMLEA--------------KNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDL 536
Cdd:COG4942 93 AELRA---ELEAQKEELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289191386 537 RQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 607
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
695-995 |
2.86e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSrEQSLDA--------LQTHYDELQARLGELQGEAASRED 766
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAeaeemrarLAARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 767 TICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFL 846
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 847 QQKVMVEAYRRDATSKDQLISELKATRKRLDselkELRQELMQVhgeKRTAEAELSRLHREVAQVRQHMADLEGHLqsaQ 926
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKKEE----KGRQELEKA---KRKLEGESTDLQEQIAELQAQIAELRAQL---A 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 927 KERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQ--EARKAITEQKQKMRR-LGSDL-------------TSAQK 990
Cdd:pfam01576 240 KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdlESERAARNKAEKQRRdLGEELealkteledtldtTAAQQ 319
|
....*
gi 289191386 991 EMKTK 995
Cdd:pfam01576 320 ELRSK 324
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
616-958 |
3.16e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 3.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 616 ENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEaafmqiqeaKTMVEEDLQRRLEEFEGERERLQRMADSAASLE 695
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQE---------KEEKAREVERRRKLEEAEKARQAEMDRQAAIYA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 696 QQleqvKLTLLQRDQQLEALQQE----HLDLMKQLTLTQEALQSREqsLDALQTHYDELQARLgeLQGEAASREDTICLL 771
Cdd:pfam17380 338 EQ----ERMAMERERELERIRQEerkrELERIRQEEIAMEISRMRE--LERLQMERQQKNERV--RQELEAARKVKILEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 772 QNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALK-KQMQKIKEQflQQKV 850
Cdd:pfam17380 410 ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKrKKLELEKEK--RDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 851 MVEAYRRDATSKD-----QLISELKATRKRLDSELKElRQELMQVHGEKRTAEAElSRLHREVAQVRQhmadleghLQSA 925
Cdd:pfam17380 488 RAEEQRRKILEKEleerkQAMIEEERKRKLLEKEMEE-RQKAIYEEERRREAEEE-RRKQQEMEERRR--------IQEQ 557
|
330 340 350
....*....|....*....|....*....|...
gi 289191386 926 QKERDEMETHLQSLQFDKEQMVAVTEANEALKK 958
Cdd:pfam17380 558 MRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
633-1095 |
4.01e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 633 KEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadsAASLEQQLEQVKLTLlqRDQQL 712
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-LEKRLEELEERHELYEE----AKAKKEELERLKKRL--TGLTP 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 713 EALQQEHLDLMKQLTLTQEALqsreqsldalqthyDELQARLGELQGEAASREDTI---------CLLQNEKIILEAALQ 783
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEI--------------SKITARIGELKKEIKELKKAIeelkkakgkCPVCGRELTEEHRKE 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAAlkKQMQKIKEQFlqQKVMVEAYRRDATSKD 863
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA--EQLKELEEKL--KKYNLEELEKKAEEYE 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 864 QLISE---LKATRKRLDSELK---ELRQELMQVHGEKRTAEAELSRLHRE--------VAQVRQHMADLEG------HLQ 923
Cdd:PRK03918 529 KLKEKlikLKGEIKSLKKELEkleELKKKLAELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPfyneylELK 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 924 SAQKERDEMETHLQSLQF---DKEQMVAVTEAN-EALKKQIEELQQE-ARKAITEQKQKMRRLGSDLTSAQKEMKTkhka 998
Cdd:PRK03918 609 DAEKELEREEKELKKLEEeldKAFEELAETEKRlEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEE---- 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 999 yenavgiLSRRLQEalaakeaadaelgqlraqggssdsslaLHERIQALEAELQAVSHSKTLLEKeLQEVIAltsqELEE 1078
Cdd:PRK03918 685 -------LEKRREE---------------------------IKKTLEKLKEELEEREKAKKELEK-LEKALE----RVEE 725
|
490
....*....|....*..
gi 289191386 1079 SREKVLELEDEVRPGHL 1095
Cdd:PRK03918 726 LREKVKKYKALLKERAL 742
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
598-758 |
4.29e-06 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 50.05 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 598 HIQVGQMTQAG-LLehLKLENVSLSQQLTETQHRsmkekgriAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEE 676
Cdd:COG1566 60 LVKEGDRVKKGqVL--ARLDPTDLQAALAQAEAQ--------LAAAEAQLARLEAELGAEAEIAAAEAQLAA-AQAQLDL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 677 FEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGE 756
Cdd:COG1566 129 AQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQ-LAQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
..
gi 289191386 757 LQ 758
Cdd:COG1566 208 TT 209
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
433-1065 |
4.92e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 433 KEKAELQAQLAALSTKLQAQvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNAslassnndlqVAEEQY 512
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEM-------QMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC----------LKEDML 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 513 QRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSK------------LKASQAEISSLQSVRQWYQQ 580
Cdd:pfam15921 166 EDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMhfrslgsaiskiLRELDTEISYLKGRIFPVED 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 581 QL-ALAQEARVRLQGEMAHIQvgqmtqaGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFM-- 657
Cdd:pfam15921 246 QLeALKSESQNKIELLLQQHQ-------DRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMrq 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 658 -------------QIQEAKTMVE---EDLQRRL----EEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQ 717
Cdd:pfam15921 319 lsdlestvsqlrsELREAKRMYEdkiEELEKQLvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 718 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEaasredtiCLLQNEKIIleaalqAAKSGKEELDRGAR 797
Cdd:pfam15921 399 QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSE--------CQGQMERQM------AAIQGKNESLEKVS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 798 RLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK--------------------IKEQFLQQKVMVEAYRR 857
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEkeraieatnaeitklrsrvdLKLQELQHLKNEGDHLR 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQLISELKATRKRLDSELKELRQELMQVHGEK-RTAEA---ELSRLHREVAQVRQHMADLEGHLQSAQKERDEME 933
Cdd:pfam15921 545 NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHgRTAGAmqvEKAQLEKEINDRRLELQEFKILKDKKDAKIRELE 624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 934 THLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEA 1013
Cdd:pfam15921 625 ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSA 704
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 289191386 1014 LAAKEAADAELGQLR-AQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKEL 1065
Cdd:pfam15921 705 QSELEQTRNTLKSMEgSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
380-920 |
6.00e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 380 NGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAE---LQAQLAALSTKLQAQVEcs 456
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAfrdLQGQLAHAKKQQELQQR-- 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 457 hSSQQRQDSLSSEVDTLKQScwdlERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDL 536
Cdd:TIGR00618 439 -YAELCAAAITCTAQCEKLE----KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 537 RQQMTALQsqlqqvqlERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLE 616
Cdd:TIGR00618 514 NPARQDID--------NPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKED 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 617 NVSLSQQLTETQHRSMK--EKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERL--QRMADSAA 692
Cdd:TIGR00618 586 IPNLQNITVRLQDLTEKlsEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLtqERVREHAL 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 693 SLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQ 772
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 773 NEkiiLEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQM-QKIKEQFLQQKVM 851
Cdd:TIGR00618 746 KE---LMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIgQEIPSDEDILNLQ 822
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 852 VEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAEAELSRLHREVAQVRQHMADLEG 920
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLA-QLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
839-992 |
7.58e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 7.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 839 QKIKEQFLQQKVMVEAYRRDA-TSKDQLISELKatrkrldSELKELRQELmqvHGEKRTAEAELSRLHRevaQVRQHMAD 917
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeAIKKEALLEAK-------EEIHKLRNEF---EKELRERRNELQKLEK---RLLQKEEN 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289191386 918 LEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEALKKQIEELQQEARKAITEQKQKMRRLgSDLTSAQ-KEM 992
Cdd:PRK12704 98 LDRKLELLEKREEELEKKEKEL--------------EQKQQELEKKEEELEELIEEQLQELERI-SGLTAEEaKEI 158
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
667-1091 |
1.06e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 667 EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLtltqEALQSREQSLDALQTH 746
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL----EKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 747 YDELQARLGELQGEAASredticllqnekiiLEAALQAAKSGKEELdrgarrleegteetsetlEKLREELAIKSGQVEH 826
Cdd:PRK03918 240 IEELEKELESLEGSKRK--------------LEEKIRELEERIEEL------------------KKEIEELEEKVKELKE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 827 LQ---QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDsELKELRQELmqvhgEKRTAEAELSr 903
Cdd:PRK03918 288 LKekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKEL-----EKRLEELEER- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 904 lHREVAQVRQHMADLEGH-LQSAQKERDEMETHLQSLQFDKEQmvaVTEANEALKKQIEELQQEA---RKAITEQKQKMR 979
Cdd:PRK03918 361 -HELYEEAKAKKEELERLkKRLTGLTPEKLEKELEELEKAKEE---IEEEISKITARIGELKKEIkelKKAIEELKKAKG 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 980 RL---GSDLTSA-QKEMKTKHKAyenavgilsrRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVS 1055
Cdd:PRK03918 437 KCpvcGRELTEEhRKELLEEYTA----------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK 506
|
410 420 430
....*....|....*....|....*....|....*.
gi 289191386 1056 HSKTLLEKELQEVIALTSQELEESREKVLELEDEVR 1091
Cdd:PRK03918 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
417-1038 |
1.07e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 417 LEGQLEALsleasqalkeKAELQAQLAALSTKLQAQVECSHSSQQRQ-DSLSSEVDTLKQSCWDLERAMTDLQNMLEAKN 495
Cdd:pfam15921 243 VEDQLEAL----------KSESQNKIELLLQQHQDRIEQLISEHEVEiTGLTEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 496 ASLASSNNDLqvaEEQYQRLMAKVEDMQRSMlskDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVR 575
Cdd:pfam15921 313 SMYMRQLSDL---ESTVSQLRSELREAKRMY---EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 576 QWYQQQLALAQEARVRLQGEmahiqvgQMTQAGLLEHLK--LENVSLSQQLTETQHRSMKEK-----GRIAAQLQGIEAD 648
Cdd:pfam15921 387 HKREKELSLEKEQNKRLWDR-------DTGNSITIDHLRreLDDRNMEVQRLEALLKAMKSEcqgqmERQMAAIQGKNES 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 649 MLDQEAAFMQIQEAKTMveedLQRRLEEFEGERERLQrmadsaaSLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTL 728
Cdd:pfam15921 460 LEKVSSLTAQLESTKEM----LRKVVEELTAKKMTLE-------SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 729 TQEALQSREQSLDALQTHYDELQArlgeLQGEAASREDTICLLQNEkiiLEAALQAAksGKEELDRGARRLEEGTEETSE 808
Cdd:pfam15921 529 KLQELQHLKNEGDHLRNVQTECEA----LKLQMAEKDKVIEILRQQ---IENMTQLV--GQHGRTAGAMQVEKAQLEKEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 809 TLEKLR-EELAI----KSGQVEHLQQETAALKKQMQKIKEQFLQQkvmVEAYRRDATSKDQLISELKATRKRLDSELKE- 882
Cdd:pfam15921 600 NDRRLElQEFKIlkdkKDAKIRELEARVSDLELEKVKLVNAGSER---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDy 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 883 ------LRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQK-----------ERDEMETHLQSLQFDKEQ 945
Cdd:pfam15921 677 evlkrnFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgmqkqitaKRGQIDALQSKIQFLEEA 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 946 MVAVTEANEALKKQIEELQQEARKAITEqKQKM-----------RRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEAL 1014
Cdd:pfam15921 757 MTNANKEKHFLKEEKNKLSQELSTVATE-KNKMagelevlrsqeRRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV 835
|
650 660
....*....|....*....|....
gi 289191386 1015 AAKEAADAELGQLRAQGGSSDSSL 1038
Cdd:pfam15921 836 RLKLQHTLDVKELQGPGYTSNSSM 859
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
395-990 |
1.10e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 395 SLESSAAETQEEMLQVLKEKM-------RLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLS 467
Cdd:pfam01576 381 ALESENAELQAELRTLQQAKQdsehkrkKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 468 SEVDTLkqscwdlERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQL 547
Cdd:pfam01576 461 KDVSSL-------ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 548 QQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTET 627
Cdd:pfam01576 534 EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEE 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 628 QHRSMK---EKGRIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLT 704
Cdd:pfam01576 614 KAISARyaeERDRAEAEAREKETRALSLARALEEALEAK----EELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRA 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 705 LlqrDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYD-ELQARlgELQGEAASRedticLLQNEKIILEAALQ 783
Cdd:pfam01576 690 L---EQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFErDLQAR--DEQGEEKRR-----QLVKQVRELEAELE 759
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 784 AAKSGKeeldrgarrleegtEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmveayrrdatskd 863
Cdd:pfam01576 760 DERKQR--------------AQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQM------------------ 807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 864 qliselkatrKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS----- 938
Cdd:pfam01576 808 ----------KDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASgasgk 877
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 939 --LQFDKEQMVA----VTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 990
Cdd:pfam01576 878 saLQDEKRRLEAriaqLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQK 935
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
630-1089 |
1.18e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 630 RSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVE-EDLQRRLEEFEGErERLQRMADSAASLEQQLEQVKLTLLQR 708
Cdd:TIGR00618 160 AKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElLTLRSQLLTLCTP-CMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 709 DQQLEALQQEHLdlmkqltlTQEALQSREQSLDALQTHYDELQ---ARLGELQGEAASREDTICLLQNEKIILEAALQAA 785
Cdd:TIGR00618 239 QQSHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 786 KSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK-IKEQFLQQKVMVEAYRRDATSKDQ 864
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 865 LISELKATRKRLDSELKE-------------LRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDE 931
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREqatidtrtsafrdLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 932 METHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG--SDLTSAQKEMKTKHKAYENAVGILSRR 1009
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1010 LQEALAAKEAADAELGQLRaqggssDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDE 1089
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQ------QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
402-1091 |
1.21e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 402 ETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVEcshSSQQRQDSLSSEVDTLKQScwdLE 481
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE---KEKKLQEEELKLLAKEEEE---LK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 482 RAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKL 561
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 562 KASQAEISSLQSVRQWyQQQLALAQEARVRLQGEMAHIQvgqmtqaglLEHLKLENVSLSQQLTETQHRSMKEKGRIA-A 640
Cdd:pfam02463 380 KLESERLSSAAKLKEE-ELELKSEEEKEAQLLLELARQL---------EDLLKEEKKEELEILEEEEESIELKQGKLTeE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 641 QLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHL 720
Cdd:pfam02463 450 KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHG 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 721 DLMKQLTL--TQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARR 798
Cdd:pfam02463 530 RLGDLGVAveNYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 799 LEEGTEETSETLEKLREELAIKSGQVEHLQQETAAL-KKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLD 877
Cdd:pfam02463 610 KATLEADEDDKRAKVVEGILKDTELTKLKESAKAKEsGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 878 SELKELRQELMQVHGEKRtAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEthlqSLQFDKEQMVAVTEANEALK 957
Cdd:pfam02463 690 AKEEILRRQLEIKKKEQR-EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQK----IDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 958 KQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEAlaakeaadaelgQLRAQGGSSDSS 1037
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE------------QLLIEQEEKIKE 832
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 289191386 1038 LALHERIQALEAELQAVSHSKTLLEkELQEVIALTSQELEESREKVLELEDEVR 1091
Cdd:pfam02463 833 EELEELALELKEEQKLEKLAEEELE-RLEEEITKEELLQELLLKEEELEEQKLK 885
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
740-902 |
1.79e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 740 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREEL-- 817
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAE-------LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 818 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSELKELRQELMQVHGE 893
Cdd:COG1579 85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleekKAELDEELAELEAELEELEAE 164
|
....*....
gi 289191386 894 KRTAEAELS 902
Cdd:COG1579 165 REELAAKIP 173
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-931 |
2.31e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 620 LSQQLTETQhRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAkTMVEED---LQRRLEEFEGERERLQRMADSAASLEQ 696
Cdd:COG4913 615 LEAELAELE-EELAEAEERLEALEAELDALQERREALQRLAEY-SWDEIDvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 697 QLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDAL-----QTHYDELQARLGELQGEAASREdticLL 771
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAedlarLELRALLEERFAAALGDAVERE----LR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 772 QNekiiLEAALQAAKSGKEELDRGARRL--------EEGTEETSETLEKLREELAI-----KSGQVEHLQQETAALKKQM 838
Cdd:COG4913 769 EN----LEERIDALRARLNRAEEELERAmrafnrewPAETADLDADLESLPEYLALldrleEDGLPEYEERFKELLNENS 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 839 QKIKEQFLQQkvmVEAYRRDATSK-DQLISELKAT------------RKRLDSELKELRQELMQVHGEKRTAEAELSRLH 905
Cdd:COG4913 845 IEFVADLLSK---LRRAIREIKERiDPLNDSLKRIpfgpgrylrleaRPRPDPEVREFRQELRAVTSGASLFDEELSEAR 921
|
330 340
....*....|....*....|....*..
gi 289191386 906 REvaQVRQHMADLEG-HLQSAQKERDE 931
Cdd:COG4913 922 FA--ALKRLIERLRSeEEESDRRWRAR 946
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
619-904 |
2.36e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 48.48 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 619 SLSQQLTETQHRSMKEKG---RIAAQLQgiEADMLDQEAAFMQIQEAktmveEDLQRRLEEFEGERERlqrmadsaasle 695
Cdd:pfam05667 230 GLASRLTPEEYRKRKRTKllkRIAEQLR--SAALAGTEATSGASRSA-----QDLAELLSSFSGSSTT------------ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 696 qQLEQVKLTLLQRDQQLeALQQEHLDLMKQLTLT----QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIclL 771
Cdd:pfam05667 291 -DTGLTKGSRFTHTEKL-QFTNEAPAATSSPPTKveteEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSI--K 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 772 QnekiiLEAALQAAKSGKEELdrgarrleegtEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKV- 850
Cdd:pfam05667 367 Q-----VEEELEELKEQNEEL-----------EKQYKVKKKTLDLLPDAEENIAKLQALVDASAQRLVELAGQWEKHRVp 430
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 289191386 851 MVEAYRRDATSKDQliSELKATRKRldSELKELRQELMQVHGEKRTAEAELSRL 904
Cdd:pfam05667 431 LIEEYRALKEAKSN--KEDESQRKL--EEIKELREKIKEVAEEAKQKEELYKQL 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
853-1030 |
3.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 853 EAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 932
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 933 ETHLQSL-----------QFDKEQMV----AVTEANEALKKQIEELQQEA------RKAITEQKQKMRRLGSDLTSAQKE 991
Cdd:COG4942 110 LRALYRLgrqpplalllsPEDFLDAVrrlqYLKYLAPARREQAEELRADLaelaalRAELEAERAELEALLAELEEERAA 189
|
170 180 190
....*....|....*....|....*....|....*....
gi 289191386 992 MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
606-844 |
4.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 606 QAGLLEHLKLENVSLSQQLTETQHR---SMKEKGRIAAQLQGIEADMLDQEAafmQIQEAKTMVEEdLQRRLEEFEGERE 682
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKElaaLKKEEKALLKQLAALERRIAALAR---RIRALEQELAA-LEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 683 RLQrmadsaASLEQQLEQVKltllqrdQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAA 762
Cdd:COG4942 94 ELR------AELEAQKEELA-------ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 763 SREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIK 842
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
..
gi 289191386 843 EQ 844
Cdd:COG4942 241 ER 242
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
668-1095 |
4.09e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 668 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHY 747
Cdd:pfam10174 268 EDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 748 DELQARLGELQGEAASREDTICLLQNEKIILEAALQAAksgKEELDRGARRLEEGTEETSETLEKLRE---ELAIKSGQV 824
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDL---KDMLDVKERKINVLQKKIENLQEQLRDkdkQLAGLKERV 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 825 EHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRldsELKELRQELMQVHGEKRTAEAELSRL 904
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVSALQPELTEKESSLIDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 905 HREVAQVRQHMADLEGHLQS----AQKERDE---METHLQSLQfdkeQMVAVTEANEALKKQIEELQQEA---RKAITEQ 974
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSleiaVEQKKEEcskLENQLKKAH----NAEEAVRTNPEINDRIRLLEQEVaryKEESGKA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 975 KQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSslalheriQALEAELQAV 1054
Cdd:pfam10174 578 QAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLE--------EARRREDNLA 649
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 289191386 1055 SHSKTLLEKELQEVIALTSQELEESREKVLELEDEV--RPGHL 1095
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLaeKDGHL 692
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
813-1051 |
5.53e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 813 LREELAIKSGQVEHLQQeTAALKKQMQKIKEQFLQQKVMVEAYRRDATSkdQLISELKATRKRLDSELKELRQELMQVHG 892
Cdd:COG4913 240 AHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 893 EKRTAEAELSRLHREVAQV-RQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAI 971
Cdd:COG4913 317 RLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE---ALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 972 TEQKQKMRRLGSDLTSAqkemKTKHKAYENAVGILSRRLQealaakeaadaelgQLRAQGGSSDSslALHERIQALEAEL 1051
Cdd:COG4913 394 EALEEELEALEEALAEA----EAALRDLRRELRELEAEIA--------------SLERRKSNIPA--RLLALRDALAEAL 453
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
668-1091 |
5.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 668 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQ--EHLDLMKQLTLTQEALQSREQSLDALQT 745
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 746 HYDELQarlgELQGEAASREDTICLLQNEKIILEAALQAAKSGK-EELDRGARRLEEGTEETSETLEKLREELAIKSGQV 824
Cdd:COG4717 154 RLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 825 EHLQQETAALKKQmQKIKEQFLQQKVMVeayrrdatskdqLISELKATRKRLDSELKELRQELMQVHGekrTAEAELSRL 904
Cdd:COG4717 230 EQLENELEAAALE-ERLKEARLLLLIAA------------ALLALLGLGGSLLSLILTIAGVLFLVLG---LLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 905 HREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEqmvAVTEANEALKKQIEELQQEARKAITEQKQkmRRLGSD 984
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD---LSPEELLELLDRIEELQELLREAEELEEE--LQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 985 LTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLA------LHERIQALEAELQAVSHSK 1058
Cdd:COG4717 369 EQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeLEEELEELEEELEELEEEL 448
|
410 420 430
....*....|....*....|....*....|....*...
gi 289191386 1059 TLLEKELQEVIA-----LTSQELEESREKVLELEDEVR 1091
Cdd:COG4717 449 EELREELAELEAeleqlEEDGELAELLQELEELKAELR 486
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
634-922 |
6.28e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 634 EKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMV-----------EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQV- 701
Cdd:COG3096 844 RRSELERELAQHRAQEQQLRQQLDQLKEQLQLLnkllpqanllaDETLADRLEELREELDAAQEAQAFIQQHGKALAQLe 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 702 -KLTLLQRD-QQLEALQQEHLDLmkqltltQEALQSREQSLDALqthyDELQARLgelqgEAASREDTICLLQ-----NE 774
Cdd:COG3096 924 pLVAVLQSDpEQFEQLQADYLQA-------KEQQRRLKQQIFAL----SEVVQRR-----PHFSYEDAVGLLGensdlNE 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 775 KiiLEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQ-------KIKEQFLQ 847
Cdd:COG3096 988 K--LRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADaeaeeraRIRRDELH 1065
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 289191386 848 QKVMVEAYRRDATSKDQLISELKatrkrLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHmaDLEGHL 922
Cdd:COG3096 1066 EELSQNRSRRSQLEKQLTRCEAE-----MDSLQKRLRKAERDYKQEREQVVQAKAGWCAVLRLARDN--DVERRL 1133
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
835-1008 |
9.89e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.97 E-value: 9.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 835 KKQMQKIKEQFLQQK----VMVEAY-------RRDATSKD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAEL 901
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKkdvtELLNKYsalaiknKFAKTKKDseIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDA 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 902 S---RLHREVAQVRQHMADLEGHL----------QSAQKERDEMETHLQSLQFDKE--QMVAVTEANEALKKQIEELQQE 966
Cdd:TIGR01612 1586 AkndKSNKAAIDIQLSLENFENKFlkisdikkkiNDCLKETESIEKKISSFSIDSQdtELKENGDNLNSLQEFLESLKDQ 1665
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 289191386 967 aRKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnaVGILSR 1008
Cdd:TIGR01612 1666 -KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--IGIIEK 1704
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
842-1091 |
1.15e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 842 KEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSEL----------KELRQELMQVHGEKRTAEAELSRLHREVAQV 911
Cdd:PRK03918 147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIkrtenieeliKEKEKELEEVLREINEISSELPELREELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 912 RQHMADLEGH---LQSAQKERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEAR--KAITEQKQKMRRLG---S 983
Cdd:PRK03918 227 EKEVKELEELkeeIEELEKELESLEGSKRKL---EEKIRELEERIEELKKEIEELEEKVKelKELKEKAEEYIKLSefyE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 984 DLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELG---QLRAQGGSSDSSLALHERIQALEAELQavSHSKTL 1060
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKklkELEKRLEELEERHELYEEAKAKKEELE--RLKKRL 381
|
250 260 270
....*....|....*....|....*....|.
gi 289191386 1061 LEKELQEVIAltsqELEESREKVLELEDEVR 1091
Cdd:PRK03918 382 TGLTPEKLEK----ELEELEKAKEEIEEEIS 408
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
823-981 |
1.30e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 823 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ-------ELMQVHGEKr 895
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkyeeQLGNVRNNK- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 896 taeaELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEALKKQIEELQQEARKAITEQK 975
Cdd:COG1579 90 ----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE----------AELAELEAELEEKKAELDEELAELE 155
|
....*.
gi 289191386 976 QKMRRL 981
Cdd:COG1579 156 AELEEL 161
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
423-990 |
1.31e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 423 ALSLEASQALKEKAELQA----QLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKqscwdleRAMTDLQNMLEAKNASL 498
Cdd:pfam07111 52 SLELEGSQALSQQAELISrqlqELRRLEEEVRLLRETSLQQKMRLEAQAMELDALA-------VAEKAGQAEAEGLRAAL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 499 ASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDlrqqmtalqsqlqqvqLERTTLTSKLKASQAEISSLQSVRQWY 578
Cdd:pfam07111 125 AGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHE----------------EALSSLTSKAEGLEKSLNSLETKRAGE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 579 QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenVSLSQQLTETQHRSM--KEKGRIAAQLQGIEADMLDqeaaf 656
Cdd:pfam07111 189 AKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLR---KYVGEQVPPEVHSQTweLERQELLDTMQHLQEDRAD----- 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 657 mqIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQ--------QLEALQQEHLDLMKQltl 728
Cdd:pfam07111 261 --LQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWRekvfalmvQLKAQDLEHRDSVKQ--- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 729 tqealqsreqsldalqthydelqarlgeLQGEAASREDTICLLQNEKIILEAALQaAKSGKEELDRgarrleegteetse 808
Cdd:pfam07111 336 ----------------------------LRGQVAELQEQVTSQSQEQAILQRALQ-DKAAEVEVER-------------- 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 809 tleklreeLAIKSGQVEhLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELM 888
Cdd:pfam07111 373 --------MSAKGLQME-LSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVR 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 889 QVHGEKRTAEAELSrlhreVAQVRQHM-----------ADLEGHLQSAQKERDEMETHLQ-SLQFDKEQMVAVTEANEAL 956
Cdd:pfam07111 444 KVHTIKGLMARKVA-----LAQLRQEScpppppappvdADLSLELEQLREERNRLDAELQlSAHLIQQEVGRAREQGEAE 518
|
570 580 590
....*....|....*....|....*....|....
gi 289191386 957 KKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 990
Cdd:pfam07111 519 RQQLSEVAQQLEQELQRAQESLASVGQQLEVARQ 552
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
575-965 |
1.38e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 575 RQWY--QQQLALAQEARVRLQGEMAhiqvgqmTQAGLLEHLKLENVSLS--QQLTETQHRSMKEKGRIAAQLQGIEADMl 650
Cdd:PRK04863 293 RELYtsRRQLAAEQYRLVEMARELA-------ELNEAESDLEQDYQAASdhLNLVQTALRQQEKIERYQADLEELEERL- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 651 dqEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQ-RMADsaasLEQQLEQVKLTLLQRDQQLEALQQehldlmkqltlT 729
Cdd:PRK04863 365 --EEQNEVVEEADEQQEE-NEARAEAAEEEVDELKsQLAD----YQQALDVQQTRAIQYQQAVQALER-----------A 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 730 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRG-----AR---RLEE 801
Cdd:PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvARellRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 802 GTEETSETLEKLREELAiKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSK----DQLISELKATRKRLD 877
Cdd:PRK04863 507 EQRHLAEQLQQLRMRLS-ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARleslSESVSEARERRMALR 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 878 SELKELRQ---ELMQVHGEKRTAEAELSRLHREV-------AQVRQHMADLEGHLQSAQKERDEMEthlqslqfdkeqmv 947
Cdd:PRK04863 586 QQLEQLQAriqRLAARAPAWLAAQDALARLREQSgeefedsQDVTEYMQQLLERERELTVERDELA-------------- 651
|
410
....*....|....*...
gi 289191386 948 avtEANEALKKQIEELQQ 965
Cdd:PRK04863 652 ---ARKQALDEEIERLSQ 666
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
654-1043 |
1.97e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 654 AAFMQIQ-EAKTMVEEDLQRRLEEFEG------ERERLQRMADSAASLEQqleqvkltllqRDQQLEALQQ---EHLDLM 723
Cdd:COG3096 271 ADYMRHAnERRELSERALELRRELFGArrqlaeEQYRLVEMARELEELSA-----------RESDLEQDYQaasDHLNLV 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 724 KQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGA------- 796
Cdd:COG3096 340 QTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAiqyqqav 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 797 ---RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQM---QKIKEQF-----LQQKVMVEAYRRDATSK-DQ 864
Cdd:COG3096 420 qalEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvaDAARRQFekayeLVCKIAGEVERSQAWQTaRE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 865 LISE------LKATRKRLDSELKELRQELMQvhgeKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS 938
Cdd:COG3096 500 LLRRyrsqqaLAQRLQQLRAQLAELEQRLRQ----QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 939 LQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQkQKMRRL----GSDLTSAQKEMKTKHKAYENAVGILSRRLQEAL 1014
Cdd:COG3096 576 AV---EQRSELRQQLEQLRARIKELAARAPAWLAAQ-DALERLreqsGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|
gi 289191386 1015 AAKEAADAELgQLRAQGGSSDSSL-ALHER 1043
Cdd:COG3096 652 RKQALESQIE-RLSQPGGAEDPRLlALAER 680
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
818-1011 |
2.12e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 818 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA 897
Cdd:COG4717 42 FIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 898 EAELS--RLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEALKKQIEELQQEARKAITEQK 975
Cdd:COG4717 122 EKLLQllPLYQELEALEAELAELPERLEELEERLEELRELEEEL--------------EELEAELAELQEELEELLEQLS 187
|
170 180 190
....*....|....*....|....*....|....*.
gi 289191386 976 QKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1011
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
582-798 |
2.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 582 LALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQE 661
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE----RRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 662 AKTMVEEDLQRRLEEFEGERERLQRM-----------ADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlMKQLTLTQ 730
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 731 EALQSREQSLDALQthyDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARR 798
Cdd:COG4942 167 AELEAERAELEALL---AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
668-1005 |
2.26e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 668 EDLQRRLEEFEGERERLQRMADSAASL-------------EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ 734
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 735 SREQSLDALQTHYDE-LQARLGELQGEaasredticllqnekiiLEAALQAAKSgkeeldrgARRLEEGTEETSETLEKL 813
Cdd:PRK04863 876 ALNRLLPRLNLLADEtLADRVEEIREQ-----------------LDEAEEAKRF--------VQQHGNALAQLEPIVSVL 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 814 REELAiksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKAtrkrlDSELKE-LRQELMQVHG 892
Cdd:PRK04863 931 QSDPE----QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAK-----NSDLNEkLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFdkeqmVAVTEANEALKKQIEELQQEAR---- 968
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-----PADSGAEERARARRDELHARLSanrs 1074
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 289191386 969 ------KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 1005
Cdd:PRK04863 1075 rrnqleKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
404-1089 |
2.53e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 404 QEEMLQVLKEK-MRLEGQLEALSLEASQALKEKAELQAQLAA--------------LSTKLQAQVECSHSSQQRQDSLSS 468
Cdd:pfam01576 10 KEEELQKVKERqQKAESELKELEKKHQQLCEEKNALQEQLQAetelcaeaeemrarLAARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 469 EVDTLKQSCWDLERAMTDLQNMLEAKNAslasSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQM---TALQS 545
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEA----ARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLeerISEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 546 QLQQVQLERTTLTSKLKASQ-AEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQL 624
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHeAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEEL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 625 TETQHRSMKEKGRIAAQLQGI---EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAAS-------L 694
Cdd:pfam01576 246 QAALARLEEETAQKNNALKKIrelEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAqqelrskR 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 695 EQQLEQVKLTLLQR----DQQLEALQQEHL----DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREd 766
Cdd:pfam01576 326 EQEVTELKKALEEEtrshEAQLQEMRQKHTqaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSE- 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 767 ticllqNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQfL 846
Cdd:pfam01576 405 ------HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQEL-L 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 847 QQkvmveayrrDATSKDQLISELKAtrkrLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQ 926
Cdd:pfam01576 478 QE---------ETRQKLNLSTRLRQ----LEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 927 KERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmRRLGSDLTSAQKEMKtKHKAYENAVG-- 1004
Cdd:pfam01576 545 EGKKRLQRELEAL---TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ-RQLVSNLEKKQKKFD-QMLAEEKAISar 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 1005 ILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESRE 1081
Cdd:pfam01576 620 YAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKnvhELERSKRALEQQVEEMKT 699
|
....*...
gi 289191386 1082 KVLELEDE 1089
Cdd:pfam01576 700 QLEELEDE 707
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
875-1011 |
3.57e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 875 RLDSELKELRQELmqvhgekRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQF----DKEQMVAVT 950
Cdd:COG1579 14 ELDSELDRLEHRL-------KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkYEEQLGNVR 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 289191386 951 ------------EANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1011
Cdd:COG1579 87 nnkeyealqkeiESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
394-1003 |
3.61e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 394 VSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTL 473
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 474 KQSCWDLERAMTDLQNMLEAKNASLASSNNDLqvaEEQYQRLMAKVEDMQRSMLSkdnTVHDLRQQMTALQSQLQQVQLE 553
Cdd:pfam01576 305 KTELEDTLDTTAAQQELRSKREQEVTELKKAL---EEETRSHEAQLQEMRQKHTQ---ALEELTEQLEQAKRNKANLEKA 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 554 RTTLTSKLKASQAEISSLQSVRQWYQQQlalAQEARVRLQGEMAHIQVGQMTQAGLLEHL-----KLENVSLSQQLTETQ 628
Cdd:pfam01576 379 KQALESENAELQAELRTLQQAKQDSEHK---RKKLEGQLQELQARLSESERQRAELAEKLsklqsELESVSSLLNEAEGK 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 629 -HRSMKEKGRIAAQLQGieadmldqeaafmqiqeaktmVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQ 707
Cdd:pfam01576 456 nIKLSKDVSSLESQLQD---------------------TQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 708 RDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKS 787
Cdd:pfam01576 515 VERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQ 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 788 GKEELDRGARRLEEGTEETSETLEKLREELaiKSGQVEHLQQETAALK-----KQMQKIKEQFLQQKVMVEAYRRD-ATS 861
Cdd:pfam01576 595 LVSNLEKKQKKFDQMLAEEKAISARYAEER--DRAEAEAREKETRALSlaralEEALEAKEELERTNKQLRAEMEDlVSS 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 862 KDQL---ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVR-QHMADLEGHLQSAQKERD------- 930
Cdd:pfam01576 673 KDDVgknVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKaQFERDLQARDEQGEEKRRqlvkqvr 752
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 289191386 931 EMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1003
Cdd:pfam01576 753 ELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEIL 825
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
367-638 |
3.94e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 367 AAAAEHQDQGQEvnGEVRSRRDSICSSVSLESSAAETQ---EEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLA 443
Cdd:PRK11281 27 ARAASNGDLPTE--ADVQAQLDALNKQKLLEAEDKLVQqdlEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 444 ALSTKLQAQVecshssQQRQDSLSseVDTLKQSCWDLERAMTDLQNMLEAKNASLASsnndLQVAEEQYQRLMAkvEDMQ 523
Cdd:PRK11281 105 ALKDDNDEET------RETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVS----LQTQPERAQAALY--ANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 524 RSM----------LSKDNTVHDLRQQMTALQSQLQQVQLERTTLTsklkasqAEISSLQSVrqwYQQQLALAQEARVRLQ 593
Cdd:PRK11281 171 RLQqirnllkggkVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL-------EGNTQLQDL---LQKQRDYLTARIQRLE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 289191386 594 GEMAHIQvgqmtqagllEHLKLENVSLSQQlTETQHRSMKEKGRI 638
Cdd:PRK11281 241 HQLQLLQ----------EAINSKRLTLSEK-TVQEAQSQDEAARI 274
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
393-524 |
8.22e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.03 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 393 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAlstklQAQVecSHSSQQRQDSLSSEVDT 472
Cdd:PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS-----EKQV--SARALAQVELLNQQIAA 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 289191386 473 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAeeqyqrLMAKVEDMQR 524
Cdd:PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA------LAQRVQELNR 194
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
673-1003 |
8.92e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 673 RLEEFEGERERL-QRMADSAAS------LEQQLEQVKLTLLQ------RDQQLEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:COG3096 786 RLEELRAERDELaEQYAKASFDvqklqrLHQAFSQFVGGHLAvafapdPEAELAALRQRRSELERELAQHRAQEQQLRQQ 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 740 LDALQthydELQARLGELQGEAASREDTIclLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSEtlekLREELAi 819
Cdd:COG3096 866 LDQLK----EQLQLLNKLLPQANLLADET--LADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAV----LQSDPE- 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 820 ksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKATrkrldSELKE-LRQELMQVHGEKRTAE 898
Cdd:COG3096 935 ---QFEQLQADYLQAKEQQRRLKQQIFALSEVVQ--RRPHFSYEDAVGLLGEN-----SDLNEkLRARLEQAEEARREAR 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 899 AELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkeQMVAVTEANEALKKQIEELQQEAR---------- 968
Cdd:COG3096 1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL-----GVQADAEAEERARIRRDELHEELSqnrsrrsqle 1079
|
330 340 350
....*....|....*....|....*....|....*
gi 289191386 969 KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1003
Cdd:COG3096 1080 KQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAK 1114
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
487-764 |
1.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 487 LQNMLEAKNASLASSNNDLqvaEEQYQRLMAKVEDMQRSmlskdntVHDLRQQ--MTALQSQLQQVQLERTTLTSKLKAS 564
Cdd:COG3206 162 LEQNLELRREEARKALEFL---EEQLPELRKELEEAEAA-------LEEFRQKngLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 565 QAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiQVGQMTQAGLLEhLKLENVSLSQQLTEtQHRSMKEkgriaaqlqg 644
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQS----PVIQQLRAQLAE-LEAELAELSARYTP-NHPDVIA---------- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 645 ieadmLDQeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlmk 724
Cdd:COG3206 296 -----LRA-----QIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE------ 359
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 289191386 725 qltltqealqsreqsLDALQTHYDELQARLGELQGEAASR 764
Cdd:COG3206 360 ---------------VEVARELYESLLQRLEEARLAEALT 384
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
614-939 |
1.23e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 614 KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEaafmqiQEAKTMVEEDLQRRLEEFEGERERLQRMADSAAS 693
Cdd:pfam02463 184 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE------EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 694 LEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYD-----ELQARLGELQGEAASREDTI 768
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDeeklkESEKEKKKAEKELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 769 CLLQNEKIILEAALQAAKSGKEELDRgaRRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQ 848
Cdd:pfam02463 338 EELEKELKELEIKREAEEEEEEELEK--LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 849 KVMVEAYRRDATSKDQLISELKATR--KRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQ 926
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIElkQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330
....*....|...
gi 289191386 927 KERDEMETHLQSL 939
Cdd:pfam02463 496 EERSQKESKARSG 508
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
417-515 |
1.34e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 41.07 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 417 LEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNA 496
Cdd:pfam08614 55 LEQLLAQLREELAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQD 134
|
90
....*....|....*....
gi 289191386 497 SLASSNNDLQVAEEQYQRL 515
Cdd:pfam08614 135 ELVALQLQLNMAEEKLRKL 153
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
661-995 |
1.76e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 661 EAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLL-QRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:COG5185 225 AKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLgENAESSKRLNENANNLIKQFENTKEKIAEYTKS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 740 LDALQtHYDELQARLGELQG----EAASREDT------ICLLQNEKIILEAALQAAKSGKEEL--DRGARRLEEGTEETS 807
Cdd:COG5185 305 IDIKK-ATESLEEQLAAAEAeqelEESKRETEtgiqnlTAEIEQGQESLTENLEAIKEEIENIvgEVELSKSSEELDSFK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 808 ETLEKLREEL-----AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKE 882
Cdd:COG5185 384 DTIESTKESLdeipqNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQS 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 883 LRQELMQVHgeKRTAEAELSRLHREVAQVRQHMADLeghLQSAQKERDEMETHLQSLqFDKEQMVAVTEANEALK---KQ 959
Cdd:COG5185 464 RLEEAYDEI--NRSVRSKKEDLNEELTQIESRVSTL---KATLEKLRAKLERQLEGV-RSKLDQVAESLKDFMRArgyAH 537
|
330 340 350
....*....|....*....|....*....|....*...
gi 289191386 960 IEELQQEARKAITEQKQKMRRLG--SDLTSAQKEMKTK 995
Cdd:COG5185 538 ILALENLIPASELIQASNAKTDGqaANLRTAVIDELTQ 575
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
897-1089 |
1.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 897 AEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQKQ 976
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 977 kmrrlgsdltsAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQL-RAQGGSSDSSLALHERIQALEAELQAVS 1055
Cdd:COG4942 95 -----------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190
....*....|....*....|....*....|....
gi 289191386 1056 HSKTLLEKELQEVIALTsQELEESREKVLELEDE 1089
Cdd:COG4942 164 ALRAELEAERAELEALL-AELEEERAALEALKAE 196
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
434-966 |
1.82e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 434 EKAELQAQLAALSTKLQaQVECSHSSQQRQdsLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQ 513
Cdd:pfam05557 3 ELIESKARLSQLQNEKK-QMELEHKRARIE--LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 514 RLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSqlqqvqlERTTLTSKLKASQAEISSLQSVRQWYQQQLalaQEARVRLQ 593
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLADAREVISCLKN-------ELSELRRQIQRAELELQSTNSELEELQERL---DLLKAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 594 GEMAHIQVGQMTQAGLLEH------LKLENVSLSQQLTETqhRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVE 667
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLAEAeqrikeLEFEIQSQEQDSEIV--KNSKSELARIPELEKELERLREHNKHLNENIENKLLLK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 668 E---DLQRRLEEFEGERERlqrmadsAASLEQQLEQVKLTLlqrdQQLEALQQEHLDLMKqltlTQEALQSReqsLDALQ 744
Cdd:pfam05557 228 EeveDLKRKLEREEKYREE-------AATLELEKEKLEQEL----QSWVKLAQDTGLNLR----SPEDLSRR---IEQLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 745 THYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELA------ 818
Cdd:pfam05557 290 QREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILEsydkel 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 819 IKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAtrkrldsELKELRQElmqvhgekrTAE 898
Cdd:pfam05557 370 TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLER-------ELQALRQQ---------ESL 433
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 899 AELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHL--QSLQFDKEQ---------MVAVTEANEALKKQIEELQQE 966
Cdd:pfam05557 434 ADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELerRCLQGDYDPkktkvlhlsMNPAAEAYQQRKNQLEKLQAE 512
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
858-985 |
1.99e-03 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 39.59 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQLISELKATRKRLDS----------ELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQK 927
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSlkdkvenlerELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 928 ERDEMEthlQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDL 985
Cdd:pfam10473 81 EKENLT---KELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQL 135
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
648-758 |
3.68e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 648 DMLDQEAAFMQIqEAKTMVEE--DLQRRLEEFEGERERLQRMADS-----AASLEQQLEQVKltllqrdQQLEALQ---Q 717
Cdd:COG0542 393 DLIDEAAARVRM-EIDSKPEEldELERRLEQLEIEKEALKKEQDEasferLAELRDELAELE-------EELEALKarwE 464
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 289191386 718 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 758
Cdd:COG0542 465 AEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
823-1011 |
4.13e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 823 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELS 902
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 903 RLHREVAQVRQHMADLEGH--LQSAQKERDEMETHLQSLQfdkeqmVAVTEAN---EALKKQIEELQQEARKAITEQKQK 977
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELS------ARYTPNHpdvIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190
....*....|....*....|....*....|....
gi 289191386 978 MRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1011
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
813-965 |
4.23e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 813 LREELAIKSGQVEHLQQETAALKKQ--MQKIKEQFLQQKVMVEAYRRDATSKDQ-----LISELKATRKRLDSELKELRQ 885
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLlsLERQGNQDLQDSVANLRASLSAAEAERsrlqaLLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavTEANEALKKQIEELQQ 965
Cdd:PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG---------RRLNVALAQRVQELNR 194
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
646-909 |
4.37e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 646 EADMLDqeaafMQIQEAKTMVE--EDLQRRLEEFEGER-ERLQRMADSAASLEQQLEQvkltllqrdqQLEALQQEHLDL 722
Cdd:PHA02562 182 QIQTLD-----MKIDHIQQQIKtyNKNIEEQRKKNGENiARKQNKYDELVEEAKTIKA----------EIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 723 MKQLtltqealQSREQSLDALQTHYDELQARLGELQGEAASRED-TICllqnekiilEAALQAAKSGKEELDRGARRLEE 801
Cdd:PHA02562 247 VMDI-------EDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKgGVC---------PTCTQQISEGPDRITKIKDKLKE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 802 GTEETsetleklrEELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELK 881
Cdd:PHA02562 311 LQHSL--------EKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382
|
250 260
....*....|....*....|....*...
gi 289191386 882 ELRQELMQVHGEKrtAEAELSRLHREVA 909
Cdd:PHA02562 383 KLQDELDKIVKTK--SELVKEKYHRGIV 408
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
434-885 |
4.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 434 EKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlkqscwdlerAMTDLQNMLEAknaslassnnDLQVAEEQYQ 513
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARELE-----------ELSARESDLEQ----------DYQAASDHLN 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 514 RLMAKV---EDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTsklkASQAEISSLQSVRQWYQQQLAlAQEARV 590
Cdd:COG3096 338 LVQTALrqqEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLE----AAEEEVDSLKSQLADYQQALD-VQQTRA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 591 rlqgemahIQVGQMTQAgllehlkLENVSLSQQLTE-TQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 669
Cdd:COG3096 413 --------IQYQQAVQA-------LEKARALCGLPDlTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 670 LQrRLEEFEGERERLQRMADSAASLEQQLEQVKLTllqrdQQLEALQQEHLDLMKQLTLTQEALQSREQ----------S 739
Cdd:COG3096 478 YE-LVCKIAGEVERSQAWQTARELLRRYRSQQALA-----QRLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldA 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 740 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEELdrgaRRLEEGTEETSETLEKLREELAI 819
Cdd:COG3096 552 AEELEELLAELEAQLEELEEQAAE-------AVEQRSELRQQLEQLRARIKEL----AARAPAWLAAQDALERLREQSGE 620
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289191386 820 ksgQVEHLQQETAALKKQMQKIKEQflqqkvmveayrrdATSKDQLIselkATRKRLDSELKELRQ 885
Cdd:COG3096 621 ---ALADSQEVTAAMQQLLEREREA--------------TVERDELA----ARKQALESQIERLSQ 665
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
386-742 |
4.47e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 386 RRDSICSSVSLESSAaETQEEMLQVLKEKMRLEGQLE----------ALSLEASQALKEKAELQAQLAALSTKLQAQVEC 455
Cdd:PRK04863 292 RRELYTSRRQLAAEQ-YRLVEMARELAELNEAESDLEqdyqaasdhlNLVQTALRQQEKIERYQADLEELEERLEEQNEV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 456 SHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHD 535
Cdd:PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDV-----------QQTRAIQYQQAVQALERAKQLCGLPDLTADN 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 536 LRQQMTALQSQLQQVQLERTTLTSKLKASQAEISslqsvrqwyqqQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKL 615
Cdd:PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS-----------QFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 616 ENV-----SLSQQLTETQHRSMKEKG--RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDL--------------QRRL 674
Cdd:PRK04863 509 RHLaeqlqQLRMRLSELEQRLRQQQRaeRLLAEFCKRLGKNLDDEDELEQLQEELEARLESLsesvsearerrmalRQQL 588
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289191386 675 EEFEGERERLQRMA----DSAASLEQQLEQVKLTLLQRdQQLEALQQEHLDLMKQLTLTQEALQSREQSLDA 742
Cdd:PRK04863 589 EQLQARIQRLAARApawlAAQDALARLREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
391-511 |
4.51e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 391 CSSVSLESSAaeTQEEMLQVLKEKMRLEGQLEALSLEASQALKEK-AELQAQLAALSTKLQAQvecsHSSQQRQDSLSSE 469
Cdd:COG0542 399 AARVRMEIDS--KPEELDELERRLEQLEIEKEALKKEQDEASFERlAELRDELAELEEELEAL----KARWEAEKELIEE 472
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 289191386 470 VDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQ--VAEEQ 511
Cdd:COG0542 473 IQELKEELEQRYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
660-977 |
4.59e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 660 QEAKTMVEEdlQRRLEEFEGERERLQRMADSAASLEQqlEQVKLTLLQRDQqlEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:PTZ00121 1473 DEAKKKAEE--AKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAKKAE--EAKKADEAKKAEEAKKADEAKKAEEKK 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 740 LDALQTHYDELQARLGELQGEAASREDticllQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKlREELAI 819
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAE-----EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK-AEEAKI 1620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 820 KSGQVEHLQQEtaalKKQMQKIKEQFLQQKVMVEAYRRDatskDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEA 899
Cdd:PTZ00121 1621 KAEELKKAEEE----KKKVEQLKKKEAEEKKKAEELKKA----EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 900 ELSRLH---REVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTE---ANEALKKQIEELQQEARKAITE 973
Cdd:PTZ00121 1693 ALKKEAeeaKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEeakKDEEEKKKIAHLKKEEEKKAEE 1772
|
....
gi 289191386 974 QKQK 977
Cdd:PTZ00121 1773 IRKE 1776
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-773 |
4.62e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 427 EASQALKEKAELQAQLAALSTKLqaqvecsHSSQQRQDSLSSEVDtlkqscwDLERAMTDLQNMLEAKNASLASSNNDLQ 506
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQL-------AAEQYRLVEMARELA-------ELNEAESDLEQDYQAASDHLNLVQTALR 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 507 vAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQ 586
Cdd:PRK04863 346 -QQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 587 EARVRLQ---------GEMAHIQVGQMTQAGlLEHLKLEN-VSLSQQLTETQHRSMKEKGRIAAQ--------------L 642
Cdd:PRK04863 425 RAKQLCGlpdltadnaEDWLEEFQAKEQEAT-EELLSLEQkLSVAQAAHSQFEQAYQLVRKIAGEvsrseawdvarellR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 643 QGIEADMLDQ--EAAFMQIQEAKTMVEE--DLQRRLEEFEGereRLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQE 718
Cdd:PRK04863 504 RLREQRHLAEqlQQLRMRLSELEQRLRQqqRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 719 HLDLMKQltltQEALQSREQSLDALQTHYDELQ---ARLGELQGEA-ASREDTICLLQN 773
Cdd:PRK04863 581 RMALRQQ----LEQLQARIQRLAARAPAWLAAQdalARLREQSGEEfEDSQDVTEYMQQ 635
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
657-979 |
5.21e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 657 MQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSR 736
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 737 EQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEegteetsetleklrEE 816
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAERE--------------EE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 817 LAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKvmVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQ--VHGEK 894
Cdd:COG4372 152 LKELEEQLESLQEELAALEQELQALSEAEAEQA--LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEakDSLEA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 895 RTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQ 974
Cdd:COG4372 230 KLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSL 309
|
....*
gi 289191386 975 KQKMR 979
Cdd:COG4372 310 IGALE 314
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
684-900 |
5.76e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 684 LQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAAS 763
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 764 REDTICLLqnekiileAALQAAKSGKEELDRGA--RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKI 841
Cdd:COG3883 98 SGGSVSYL--------DVLLGSESFSDFLDRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 289191386 842 KEQFLQQKVMVEAYrrdatsKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAE 900
Cdd:COG3883 170 KAELEAQQAEQEAL------LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
775-1088 |
5.88e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 775 KIILEAAlqaakSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKE----------- 843
Cdd:pfam02463 156 LEIEEEA-----AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLeleeeyllyld 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 844 ---------QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ- 913
Cdd:pfam02463 231 ylklneeriDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKv 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 914 --------HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDL 985
Cdd:pfam02463 311 ddeeklkeSEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 986 TSAQKEMKTKHKAyENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKEL 1065
Cdd:pfam02463 391 KLKEEELELKSEE-EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340
....*....|....*....|...
gi 289191386 1066 QEVIALTSQELEESREKVLELED 1088
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSR 492
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
610-930 |
5.88e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 610 LEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMAD 689
Cdd:COG4372 15 LFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 690 SAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIC 769
Cdd:COG4372 95 ELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 770 LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKK-QMQKIKEQFLQQ 848
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDAlELEEDKEELLEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 849 KVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKE 928
Cdd:COG4372 255 VILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAI 334
|
..
gi 289191386 929 RD 930
Cdd:COG4372 335 LL 336
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
778-991 |
6.04e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 778 LEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRR 857
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQsaQKERDEMETHLQ 937
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ--ALSEAEAEQALD 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 289191386 938 SLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKE 991
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLD 240
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
555-929 |
7.68e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 555 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEhlklENVSLSQQLTETQHRSMKE 634
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELK----EELRQSREKHEELEEKYKE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 635 KGRIAAQLQGIEADMLDQEAAFMQ-IQEaktmVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLE 713
Cdd:pfam07888 106 LSASSEELSEEKDALLAQRAAHEArIRE----LEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 714 ALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEL- 792
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELs 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 793 ------DRG------AR-RLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRrda 859
Cdd:pfam07888 262 smaaqrDRTqaelhqARlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEER--- 338
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 860 TSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKER 929
Cdd:pfam07888 339 MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADAK 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
420-655 |
7.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 420 QLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlkqscwDLERAMTDLQNMLEAKNASLA 499
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-------ALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 500 SSNNDLQVAEEQYQRLMAKVEDMQR----SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVR 575
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 576 QWYQQQLALAQEARVRLQGEMAhiqvgqmTQAGLLEHLKLENVSLSQQLTETQhrsmKEKGRIAAQLQGIEADMLDQEAA 655
Cdd:COG4942 174 AELEALLAELEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
832-1090 |
8.09e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 832 AALKKQMQKIKEQFLQQKVmveayrrDATSKDQLISELK--ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHRE-V 908
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAE-------DKLVQQDLEQTLAllDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDnD 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 909 AQVRQHMADLEghLQSAQKERDEMETHLQSLQfdkeqmVAVTEANEALkkqieelqqearkaITEQKQKMRrlgsdltsA 988
Cdd:PRK11281 112 EETRETLSTLS--LRQLESRLAQTLDQLQNAQ------NDLAEYNSQL--------------VSLQTQPER--------A 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 989 QKEMktkhkaYENavgilSRRLQealaakeaadaelgQLRAQ-GGSSDSSLAL-HERIQALEAELQAVSHSKTLLEKELQ 1066
Cdd:PRK11281 162 QAAL------YAN-----SQRLQ--------------QIRNLlKGGKVGGKALrPSQRVLLQAEQALLNAQNDLQRKSLE 216
|
250 260
....*....|....*....|....*..
gi 289191386 1067 ---EVIALTSQELEESREKVLELEDEV 1090
Cdd:PRK11281 217 gntQLQDLLQKQRDYLTARIQRLEHQL 243
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
641-798 |
8.37e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 641 QLQGIEADMLDQEAafmqIQEAKTMVEEDLQRRLEEFEGERERlQRMADSAASLEQQLEQVKLtlLQRDQQLEALQQEHL 720
Cdd:PRK12705 29 QRLAKEAERILQEA----QKEAEEKLEAALLEAKELLLRERNQ-QRQEARREREELQREEERL--VQKEEQLDARAEKLD 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 721 DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAAsREDTICLLQNEkiILEAALQAAKSGKEELDRGARR 798
Cdd:PRK12705 102 NLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQA-RKLLLKLLDAE--LEEEKAQRVKKIEEEADLEAER 176
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
858-1053 |
8.73e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 858 DATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDE------ 931
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraraly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 932 --------METHLQSLQFDK--EQMVAVTEANEALKKQIEElQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEN 1001
Cdd:COG3883 97 rsggsvsyLDVLLGSESFSDflDRLSALSKIADADADLLEE-LKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 289191386 1002 AVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQA 1053
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
878-1091 |
9.27e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.52 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 878 SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKE-----RDEMETHLQSLQFDKeQMVAVTEA 952
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDlvglrKDLDEATLARVDLEA-KIESLKEE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 953 NEALKKQIEELQQEARKAITEQKQKMRR---LGSDLTSAQKEMKTKHKAyenavgiLSRRLQEALAAKEAADAELGQLRA 1029
Cdd:pfam00038 133 LAFLKKNHEEEVRELQAQVSDTQVNVEMdaaRKLDLTSALAEIRAQYEE-------IAAKNREEAEEWYQSKLEELQQAA 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 289191386 1030 QGGSSDSSLALHE------RIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDEVR 1091
Cdd:pfam00038 206 ARNGDALRSAKEEitelrrTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQ 273
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
918-1002 |
9.33e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 918 LEGHLQSAQKERDEMETHLQSLQFDKEQMvavteaNEALKKQIEELQQEARKAITEQKQ-------KMRRLGSDLTSAQK 990
Cdd:PRK00409 532 LEQKAEEAEALLKEAEKLKEELEEKKEKL------QEEEDKLLEEAEKEAQQAIKEAKKeadeiikELRQLQKGGYASVK 605
|
90
....*....|....
gi 289191386 991 --EMKTKHKAYENA 1002
Cdd:PRK00409 606 ahELIEARKRLNKA 619
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
395-597 |
9.77e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 395 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVEcshSSQQRQDSLSSEVDTLK 474
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEA---EIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289191386 475 QScwdlERAMTDLQNMLEAKNAS-LASSNNDLQVAEEQYQRLMAKVEDMQRSMlskDNTVHDLRQQMTALQSQLQQVQLE 553
Cdd:COG3883 97 RS----GGSVSYLDVLLGSESFSdFLDRLSALSKIADADADLLEELKADKAEL---EAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 289191386 554 RTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMA 597
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
|
| |
