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Conserved domains on  [gi|378754908|gb|EHY64936|]
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hypothetical protein NERG_01992 [Nematocida ausubeli]

Protein Classification

FYRN domain-containing protein( domain architecture ID 10532222)

FYRN domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 71-122 2.54e-11

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


:

Pssm-ID: 461787  Cd Length: 51  Bit Score: 56.74  E-value: 2.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 378754908   71 SKFSLTSIGILPPEEyTSFYSPMYIYPIGYKIKRKYASPEKSDQKLTYFCQI 122
Cdd:pfam05964   1 GSLTVLSLGEIVPDR-PAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 71-122 2.54e-11

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 56.74  E-value: 2.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 378754908   71 SKFSLTSIGILPPEEyTSFYSPMYIYPIGYKIKRKYASPEKSDQKLTYFCQI 122
Cdd:pfam05964   1 GSLTVLSLGEIVPDR-PAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 88-123 8.54e-05

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 38.80  E-value: 8.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 378754908    88 SFYSPMYIYPIGYKIKRKYASPEKSDQKLTYFCQIR 123
Cdd:smart00541   8 LFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVID 43
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 71-122 2.54e-11

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 56.74  E-value: 2.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 378754908   71 SKFSLTSIGILPPEEyTSFYSPMYIYPIGYKIKRKYASPEKSDQKLTYFCQI 122
Cdd:pfam05964   1 GSLTVLSLGEIVPDR-PAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 88-123 8.54e-05

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 38.80  E-value: 8.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 378754908    88 SFYSPMYIYPIGYKIKRKYASPEKSDQKLTYFCQIR 123
Cdd:smart00541   8 LFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVID 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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