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Conserved domains on  [gi|320038186|gb|EFW20122|]
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BCAS2 family protein [Coccidioides posadasii str. Silveira]

Protein Classification

pre-mRNA-splicing factor SPF27 family protein( domain architecture ID 10529685)

pre-mRNA-splicing factor SPF27 family protein similar to human SPF27, also called breast carcinoma-amplified sequence 2 or BCAS2, that is required for pre-mRNA splicing as a component of the activated spliceosome

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 6-211 6.50e-85

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


:

Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 249.81  E-value: 6.50e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186    6 EFHDSLPYIDGEIA-PEVRSEIDKLIAVELPAGHRTTL-HSSIPTLPEPKF-SALIQSELERKANSRPITGgVDLSRYEA 82
Cdd:pfam05700   1 EVHDSLPYIDDEYEdPGLREAADALIEEELRRSRPTPNyLPDLPPPPEPAFfSPLLAAELERVEAGQPLTA-LDLSRYEL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186   83 PEVPSTEGKDqatiLSDWRETLRKAYTASSHLSARQENLSLLEAHGKNAWLIGNAQLEEILRQVEKEIQETKQATDEVNR 162
Cdd:pfam05700  80 PAPPSGKRND----LEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNR 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 320038186  163 ERKMRQETARGEIEGLEDAWKRGVSGIINVELAAEKLRMEILEKRRQQA 211
Cdd:pfam05700 156 QRKNAQTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQAA 204
 
Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 6-211 6.50e-85

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 249.81  E-value: 6.50e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186    6 EFHDSLPYIDGEIA-PEVRSEIDKLIAVELPAGHRTTL-HSSIPTLPEPKF-SALIQSELERKANSRPITGgVDLSRYEA 82
Cdd:pfam05700   1 EVHDSLPYIDDEYEdPGLREAADALIEEELRRSRPTPNyLPDLPPPPEPAFfSPLLAAELERVEAGQPLTA-LDLSRYEL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186   83 PEVPSTEGKDqatiLSDWRETLRKAYTASSHLSARQENLSLLEAHGKNAWLIGNAQLEEILRQVEKEIQETKQATDEVNR 162
Cdd:pfam05700  80 PAPPSGKRND----LEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNR 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 320038186  163 ERKMRQETARGEIEGLEDAWKRGVSGIINVELAAEKLRMEILEKRRQQA 211
Cdd:pfam05700 156 QRKNAQTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQAA 204
 
Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 6-211 6.50e-85

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 249.81  E-value: 6.50e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186    6 EFHDSLPYIDGEIA-PEVRSEIDKLIAVELPAGHRTTL-HSSIPTLPEPKF-SALIQSELERKANSRPITGgVDLSRYEA 82
Cdd:pfam05700   1 EVHDSLPYIDDEYEdPGLREAADALIEEELRRSRPTPNyLPDLPPPPEPAFfSPLLAAELERVEAGQPLTA-LDLSRYEL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038186   83 PEVPSTEGKDqatiLSDWRETLRKAYTASSHLSARQENLSLLEAHGKNAWLIGNAQLEEILRQVEKEIQETKQATDEVNR 162
Cdd:pfam05700  80 PAPPSGKRND----LEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNR 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 320038186  163 ERKMRQETARGEIEGLEDAWKRGVSGIINVELAAEKLRMEILEKRRQQA 211
Cdd:pfam05700 156 QRKNAQTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQAA 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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