NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|229784249|gb|EEP20363|]
View 

hypothetical protein BIFANG_03681 [Bifidobacterium angulatum DSM 20098 = JCM 7096]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MTES_1575 super family cl46272
REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase ...
 1102-1195 6.60e-09

REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.


The actual alignment was detected with superfamily member pfam18741:

Pssm-ID: 480612  Cd Length: 96  Bit Score: 54.40  E-value: 6.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229784249  1102 DLADRIRNRGLNVAVNYGFNrGVTIPMVVGLKDKPFALAVLTDDANFMSIQSTRERHRMLSADLMTLGWSVASVWSVGAF 1181
Cdd:pfam18741    4 EVAEALRERGYRVVPQVGVG-GYRIDLVVVDPPGRYRLGIECDGATYHSSKSARDRDRLRQRVLERLGWKFHRIWSTDWY 82

                           90
                   ....*....|....
gi 229784249  1182 VNPEKEVDHLVSQL 1195
Cdd:pfam18741   83 RDPEAELERLWEAL 96
 
Name Accession Description Interval E-value
MTES_1575 pfam18741
REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase ...
 1102-1195 6.60e-09

REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.


Pssm-ID: 465853  Cd Length: 96  Bit Score: 54.40  E-value: 6.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229784249  1102 DLADRIRNRGLNVAVNYGFNrGVTIPMVVGLKDKPFALAVLTDDANFMSIQSTRERHRMLSADLMTLGWSVASVWSVGAF 1181
Cdd:pfam18741    4 EVAEALRERGYRVVPQVGVG-GYRIDLVVVDPPGRYRLGIECDGATYHSSKSARDRDRLRQRVLERLGWKFHRIWSTDWY 82

                           90
                   ....*....|....
gi 229784249  1182 VNPEKEVDHLVSQL 1195
Cdd:pfam18741   83 RDPEAELERLWEAL 96
 
Name Accession Description Interval E-value
MTES_1575 pfam18741
REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase ...
 1102-1195 6.60e-09

REase_MTES_1575; Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.


Pssm-ID: 465853  Cd Length: 96  Bit Score: 54.40  E-value: 6.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229784249  1102 DLADRIRNRGLNVAVNYGFNrGVTIPMVVGLKDKPFALAVLTDDANFMSIQSTRERHRMLSADLMTLGWSVASVWSVGAF 1181
Cdd:pfam18741    4 EVAEALRERGYRVVPQVGVG-GYRIDLVVVDPPGRYRLGIECDGATYHSSKSARDRDRLRQRVLERLGWKFHRIWSTDWY 82

                           90
                   ....*....|....
gi 229784249  1182 VNPEKEVDHLVSQL 1195
Cdd:pfam18741   83 RDPEAELERLWEAL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH