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Conserved domains on  [gi|148696856|gb|EDL28803|]
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splicing factor, arginine/serine-rich 14, isoform CRA_a, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWAP super family cl46999
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 35-64 1.40e-05

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


The actual alignment was detected with superfamily member smart00648:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 39.49  E-value: 1.40e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 148696856    35 METAEKLARFVAQVGPEIEQFSIENSTDNP 64
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNP 30
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 35-64 1.40e-05

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 39.49  E-value: 1.40e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 148696856    35 METAEKLARFVAQVGPEIEQFSIENSTDNP 64
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNP 30
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 36-64 5.74e-04

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 35.19  E-value: 5.74e-04
                          10        20
                  ....*....|....*....|....*....
gi 148696856   36 ETAEKLARFVAQVGPEIEQFSIENSTDNP 64
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNP 29
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 35-64 1.40e-05

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 39.49  E-value: 1.40e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 148696856    35 METAEKLARFVAQVGPEIEQFSIENSTDNP 64
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNP 30
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 36-64 5.74e-04

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 35.19  E-value: 5.74e-04
                          10        20
                  ....*....|....*....|....*....
gi 148696856   36 ETAEKLARFVAQVGPEIEQFSIENSTDNP 64
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNP 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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