NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|148666741|gb|EDK99157|]
View 

adducin 2 (beta), isoform CRA_c [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Aldolase_II super family cl00214
Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes ...
 130-263 2.34e-48

Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.


The actual alignment was detected with superfamily member PRK07044:

Pssm-ID: 469663  Cd Length: 252  Bit Score: 166.56  E-value: 2.34e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVekGSSCFPVDTTGF 209
Cdd:PRK07044  14 EWQARVDLAAAYRLVALLGWDDLIYTHISARVPGEEHHFLINPYGLLFDEITASNLVKIDLDGNVV--DDSPYPVNPAGF 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 148666741 210 SLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLV-GDMAYYDFNG 263
Cdd:PRK07044  92 TIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDGLLPLSQHALQFyGRLAYHDYEG 146
rad23 super family cl36702
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 314-416 1.59e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


The actual alignment was detected with superfamily member TIGR00601:

Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  314 DQELEEYK-KE-------VERKKLEQEQEGEKDIATEKPGSPVKSTPASPVQSPSKA--GTKSPAVSPSKTSEDTKKTEV 383
Cdd:TIGR00601  56 DKTVKEYKiKEkdfvvvmVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAApaSAVEEKSPSEESATATAPESP 135

                          90       100       110
                  ....*....|....*....|....*....|...
gi 148666741  384 SEANTEPEPVKPEGLVVnGKEEEPSVEEALSKG 416
Cdd:TIGR00601 136 STSVPSSGSDAASTLVV-GSERETTIEEIMEMG 167
 
Name Accession Description Interval E-value
PRK07044 PRK07044
aldolase II superfamily protein; Provisional
 130-263 2.34e-48

aldolase II superfamily protein; Provisional


Pssm-ID: 235916  Cd Length: 252  Bit Score: 166.56  E-value: 2.34e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVekGSSCFPVDTTGF 209
Cdd:PRK07044  14 EWQARVDLAAAYRLVALLGWDDLIYTHISARVPGEEHHFLINPYGLLFDEITASNLVKIDLDGNVV--DDSPYPVNPAGF 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 148666741 210 SLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLV-GDMAYYDFNG 263
Cdd:PRK07044  92 TIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDGLLPLSQHALQFyGRLAYHDYEG 146
Aldolase_II cd00398
Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes ...
 130-283 6.98e-46

Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.


Pssm-ID: 238232 [Multi-domain]  Cd Length: 209  Bit Score: 158.68  E-value: 6.98e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRcKISSVYRLLDLYGWaqlsDTYVTLRVSKEQD---HFLISPKGVSCSEVTASSLIKVNILGEVVE--KGSSCFPv 204
Cdd:cd00398    1 EKLKR-KIIAACLLLDLYGW----VTGTGGNVSARDRdrgYFLITPSGVDYEEMTASDLVVVDAQGKVVEgkKPSSETP- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 205 dttgfsLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLV---GDMAYYDFNGEMeQEADRINLQKCLG-P 280
Cdd:cd00398   75 ------LHLALYRARPDIGCIVHTHSTHATAVSQLKEGLIPAGHTACAVyftGDIPCTPYMTPE-TGEDEIGTQRALGfP 147


                 ...
gi 148666741 281 TCK 283
Cdd:cd00398  148 NSK 150
Aldolase_II pfam00596
Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and ...
 135-283 2.32e-34

Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.


Pssm-ID: 459862 [Multi-domain]  Cd Length: 178  Bit Score: 126.89  E-value: 2.32e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  135 CKISSVYRLLDLYGWAQLSDTYVTLRVskEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKG---SSCFPvdttgfsL 211
Cdd:pfam00596   1 EELAAAGRLLARRGLVEGTGGNISVRL--PGDGFLITPSGVDFGELTPEDLVVVDLDGNVVEGGlkpSSETP-------L 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148666741  212 HSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNA--LLVGDMAYYDfNGEMEQEADRINLQKCLGPTCK 283
Cdd:pfam00596  72 HLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAadFLGGDIPIIP-YYTPGTEELGERIAEALGGDRK 144
Aldolase_II smart01007
Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and ...
 137-272 1.50e-31

Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.


Pssm-ID: 214970 [Multi-domain]  Cd Length: 185  Bit Score: 119.66  E-value: 1.50e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741   137 ISSVYRLLDLYGWAQLSDTYVTLRVsKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscFPVDTTGFSLHSAIY 216
Cdd:smart01007   1 LAAACRLLARRGLVEGTGGNISARV-GEEDLFLITPSGVDFGELTASDLVVVDLDGNVVEGGG--GPKPSSETPLHLAIY 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 148666741   217 AARPDVRCAIHLHTPATAAVSAM--KCGLLPVSHNALLVG-DMAYYDFNGEMEQEADRI 272
Cdd:smart01007  78 RARPDVGAVVHTHSPYATALAALgkPLPLLPTEQAAAFLGgEIPYAPYAGPGTELAEEG 136
AraD COG0235
5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar ...
 130-272 2.98e-30

5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) [Amino acid transport and metabolism, Carbohydrate transport and metabolism]; 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440005 [Multi-domain]  Cd Length: 208  Bit Score: 116.85  E-value: 2.98e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVskEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscfpVDTTGF 209
Cdd:COG0235    3 EEELREELAAAGRRLARRGLVDGTAGNISVRL--DDDRFLITPSGVDFGELTPEDLVVVDLDGNVVEGDL----KPSSET 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148666741 210 SLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHN--ALLVGDMAYYDFNG-EMEQEADRI 272
Cdd:COG0235   77 PLHLAIYRARPDVGAVVHTHSPYATALSALGEPLPPLEQTeaAAFLGDVPVVPYAGpGTEELAEAI 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 314-416 1.59e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  314 DQELEEYK-KE-------VERKKLEQEQEGEKDIATEKPGSPVKSTPASPVQSPSKA--GTKSPAVSPSKTSEDTKKTEV 383
Cdd:TIGR00601  56 DKTVKEYKiKEkdfvvvmVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAApaSAVEEKSPSEESATATAPESP 135

                          90       100       110
                  ....*....|....*....|....*....|...
gi 148666741  384 SEANTEPEPVKPEGLVVnGKEEEPSVEEALSKG 416
Cdd:TIGR00601 136 STSVPSSGSDAASTLVV-GSERETTIEEIMEMG 167
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 295-408 5.39e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 42.27  E-value: 5.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 295 ADTKDESEETVPNPFSQLTDQELEEYKKEVERKKLEQEQEGEKDIATEKPGSPvKSTPASPVQSPSkagtkSPAVSPSKT 374
Cdd:PRK13108 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAH-QVDAEAASAAPE-----EPAALASEA 408

                         90       100       110
                 ....*....|....*....|....*....|....
gi 148666741 375 SEDTKKTEVSEANTEPEPVKPEGLVVNGKEEEPS 408
Cdd:PRK13108 409 HDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA 442
 
Name Accession Description Interval E-value
PRK07044 PRK07044
aldolase II superfamily protein; Provisional
 130-263 2.34e-48

aldolase II superfamily protein; Provisional


Pssm-ID: 235916  Cd Length: 252  Bit Score: 166.56  E-value: 2.34e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVekGSSCFPVDTTGF 209
Cdd:PRK07044  14 EWQARVDLAAAYRLVALLGWDDLIYTHISARVPGEEHHFLINPYGLLFDEITASNLVKIDLDGNVV--DDSPYPVNPAGF 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 148666741 210 SLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLV-GDMAYYDFNG 263
Cdd:PRK07044  92 TIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDGLLPLSQHALQFyGRLAYHDYEG 146
Aldolase_II cd00398
Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes ...
 130-283 6.98e-46

Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.


Pssm-ID: 238232 [Multi-domain]  Cd Length: 209  Bit Score: 158.68  E-value: 6.98e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRcKISSVYRLLDLYGWaqlsDTYVTLRVSKEQD---HFLISPKGVSCSEVTASSLIKVNILGEVVE--KGSSCFPv 204
Cdd:cd00398    1 EKLKR-KIIAACLLLDLYGW----VTGTGGNVSARDRdrgYFLITPSGVDYEEMTASDLVVVDAQGKVVEgkKPSSETP- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 205 dttgfsLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLV---GDMAYYDFNGEMeQEADRINLQKCLG-P 280
Cdd:cd00398   75 ------LHLALYRARPDIGCIVHTHSTHATAVSQLKEGLIPAGHTACAVyftGDIPCTPYMTPE-TGEDEIGTQRALGfP 147


                 ...
gi 148666741 281 TCK 283
Cdd:cd00398  148 NSK 150
Aldolase_II pfam00596
Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and ...
 135-283 2.32e-34

Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.


Pssm-ID: 459862 [Multi-domain]  Cd Length: 178  Bit Score: 126.89  E-value: 2.32e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  135 CKISSVYRLLDLYGWAQLSDTYVTLRVskEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKG---SSCFPvdttgfsL 211
Cdd:pfam00596   1 EELAAAGRLLARRGLVEGTGGNISVRL--PGDGFLITPSGVDFGELTPEDLVVVDLDGNVVEGGlkpSSETP-------L 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148666741  212 HSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNA--LLVGDMAYYDfNGEMEQEADRINLQKCLGPTCK 283
Cdd:pfam00596  72 HLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAadFLGGDIPIIP-YYTPGTEELGERIAEALGGDRK 144
Aldolase_II smart01007
Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and ...
 137-272 1.50e-31

Class II Aldolase and Adducin N-terminal domain; This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.


Pssm-ID: 214970 [Multi-domain]  Cd Length: 185  Bit Score: 119.66  E-value: 1.50e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741   137 ISSVYRLLDLYGWAQLSDTYVTLRVsKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscFPVDTTGFSLHSAIY 216
Cdd:smart01007   1 LAAACRLLARRGLVEGTGGNISARV-GEEDLFLITPSGVDFGELTASDLVVVDLDGNVVEGGG--GPKPSSETPLHLAIY 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 148666741   217 AARPDVRCAIHLHTPATAAVSAM--KCGLLPVSHNALLVG-DMAYYDFNGEMEQEADRI 272
Cdd:smart01007  78 RARPDVGAVVHTHSPYATALAALgkPLPLLPTEQAAAFLGgEIPYAPYAGPGTELAEEG 136
AraD COG0235
5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar ...
 130-272 2.98e-30

5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) [Amino acid transport and metabolism, Carbohydrate transport and metabolism]; 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440005 [Multi-domain]  Cd Length: 208  Bit Score: 116.85  E-value: 2.98e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVskEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscfpVDTTGF 209
Cdd:COG0235    3 EEELREELAAAGRRLARRGLVDGTAGNISVRL--DDDRFLITPSGVDFGELTPEDLVVVDLDGNVVEGDL----KPSSET 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148666741 210 SLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHN--ALLVGDMAYYDFNG-EMEQEADRI 272
Cdd:COG0235   77 PLHLAIYRARPDVGAVVHTHSPYATALSALGEPLPPLEQTeaAAFLGDVPVVPYAGpGTEELAEAI 142
PRK06661 PRK06661
hypothetical protein; Provisional
 141-262 2.03e-25

hypothetical protein; Provisional


Pssm-ID: 168637  Cd Length: 231  Bit Score: 104.14  E-value: 2.03e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 141 YRLLDLYGWAQLSDTYVTLRvSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscFPVDTTGFSLHSAIYAARP 220
Cdd:PRK06661  11 YRIMAYLSLDDHTYTHLSAR-PKNADFYYIYPFGLRFEEVTTENLLKVSLDGQILEGEE--YQYNKTGYFIHGSIYKTRP 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 148666741 221 DVRCAIHLHTPATAAVSAMKCGLLPVSHNAL-LVGDMAYYDFN 262
Cdd:PRK06661  88 DISAIFHYHTPASIAVSALKCGLLPISQWALhFYDRISYHNYN 130
PRK06208 PRK06208
class II aldolase/adducin family protein;
86-272 2.66e-18

class II aldolase/adducin family protein;


Pssm-ID: 235743  Cd Length: 274  Bit Score: 84.66  E-value: 2.66e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  86 ALRQIADFMASTSHAVFPASSMNFSMMTPINDlhtadslnlAKGERLMR-CKISSVYRLLDLYGWAQLSDTYVTLRVSKE 164
Cdd:PRK06208   4 VLSRAADTAAALSIPQPPREGLWFPRPPPFAT---------VAEERLHRkQRLAAAFRLFARFGFDEGLAGHITARDPEL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 165 QDHFLISPKGVSCSEVTASSLIKVNILGEVVEkGSscFPVDTTGFSLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLL 244
Cdd:PRK06208  75 PDHFWVNPLGVHFSQIKVSDLLLVDHDGEVVE-GD--RPLNRAAFAIHSAIHEARPDVVAAAHTHSTYGKAWSTLGRPLD 151

                        170       180       190
                 ....*....|....*....|....*....|..
gi 148666741 245 PVSHNAL-LVGDMAYYD-FNGEM--EQEADRI 272
Cdd:PRK06208 152 PITQDACaFYEDHALFDdFTGVVvdTSEGRRI 183
PRK06486 PRK06486
aldolase;
165-272 3.00e-11

aldolase;


Pssm-ID: 235814  Cd Length: 262  Bit Score: 63.58  E-value: 3.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 165 QDHFLISPKGVSCSEVTASSLIKVNILGEVVEkGSScfPVDTTGFSLHSAIYAARPDVRCAIHLHTP-ATAAVSAMKCGL 243
Cdd:PRK06486  59 DDLFLVNPYGYAFSEITASDLLICDFDGNVLA-GRG--EPEATAFFIHARIHRAIPRAKAAFHTHMPyATALSLTEGRPL 135

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 148666741 244 LPVSHNAllvgdMAYY-------DFNGEM--EQEADRI 272
Cdd:PRK06486 136 TTLGQTA-----LKFYgrtavdeDYNGLAldAAEGDRI 168
PRK07490 PRK07490
hypothetical protein; Provisional
 130-279 2.79e-10

hypothetical protein; Provisional


Pssm-ID: 236031 [Multi-domain]  Cd Length: 245  Bit Score: 60.50  E-value: 2.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 130 ERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNilgevvEKGSSCFP----VD 205
Cdd:PRK07490   8 EEQIRVDLAAAFRWIARLGMHEAVANHFSAAVSADGKQFLLNPKWKHFSRIRASDLLLLD------ADDPSTAErpdvPD 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148666741 206 TTGFSLHSAIYAARPDVRCAIHLHTPATAAVSAMKCG-LLPVSHNALLVGDMAYYDFN-GEMEQEADRINLQKCLG 279
Cdd:PRK07490  82 ATAWAIHGQIHRRLPHARCVMHVHSVYATALACLADPtLPPIDQNTARFFNRVAVDTLyGGMALEEEGERLAGLLG 157
PRK07090 PRK07090
class II aldolase/adducin domain protein; Provisional
 150-258 7.92e-10

class II aldolase/adducin domain protein; Provisional


Pssm-ID: 180832  Cd Length: 260  Bit Score: 59.26  E-value: 7.92e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 150 AQLSDTYVTLRVskeqdhflispkGVSCSEVTASSLIKVNILGEVVEKGSSCFPVDttgfSLHSAIYAARPDVRCAIHLH 229
Cdd:PRK07090  59 AEAPGTYYTQRL------------GLGFDEITASNLLLVDEDLNVLDGEGMPNPAN----RFHSWIYRARPDVNCIIHTH 122

                         90       100       110
                 ....*....|....*....|....*....|.
gi 148666741 230 TPATAAVSAMKCGLLpVSH--NALLVGDMAY 258
Cdd:PRK07090 123 PPHVAALSMLEVPLV-VSHmdTCPLYDDCAF 152
PRK06557 PRK06557
L-ribulose-5-phosphate 4-epimerase; Validated
 157-234 8.30e-08

L-ribulose-5-phosphate 4-epimerase; Validated


Pssm-ID: 235829 [Multi-domain]  Cd Length: 221  Bit Score: 52.70  E-value: 8.30e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148666741 157 VTLRVsKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEkGSSCFPVDTtgfSLHSAIYAARPDVRCAIHLHTP-ATA 234
Cdd:PRK06557  35 VSARD-PGTDLVVIKPSGVSYDDLTPEDMVVVDLDGNVVE-GDLKPSSDT---ASHLYVYRHMPDVGGVVHTHSTyATA 108
PRK08130 PRK08130
putative aldolase; Validated
 167-319 2.80e-06

putative aldolase; Validated


Pssm-ID: 181241 [Multi-domain]  Cd Length: 213  Bit Score: 47.95  E-value: 2.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 167 HFLISPKGVSCSEVTASSLIKVNILGEVVEKGSscfPVDTTgfSLHSAIYAARPDVRCAIHLHTPATAAVS--------- 237
Cdd:PRK08130  38 GWLVTPTGSCLGRLDPARLSKVDADGNWLSGDK---PSKEV--PLHRAIYRNNPECGAVVHLHSTHLTALSclggldptn 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 238 ---------AMKCGLLPVshnallvgdMAYY-----DFNGEMEQEADRIN--LQKCLGP--TCKSTESQlmskgdADTKD 299
Cdd:PRK08130 113 vlppftpyyVMRVGHVPL---------IPYYrpgdpAIAEALAGLAARYRavLLANHGPvvWGSSLEAA------VNATE 177

                        170       180
                 ....*....|....*....|....*..
gi 148666741 300 ESEETV-------PNPFSQLTDQELEE 319
Cdd:PRK08130 178 ELEETAklilllgGRPPRYLTDEEIAE 204
PRK06833 PRK06833
L-fuculose-phosphate aldolase;
163-248 1.76e-05

L-fuculose-phosphate aldolase;


Pssm-ID: 180717 [Multi-domain]  Cd Length: 214  Bit Score: 45.90  E-value: 1.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 163 KEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEkGSScfpVDTTGFSLHSAIYAARPDVRCAIHLHTPATAAVSAMKCG 242
Cdd:PRK06833  35 REQGLMAITPSGIDYFEIKPEDIVIMDLDGKVVE-GER---KPSSELDMHLIFYRNREDINAIVHTHSPYATTLACLGWE 110


                 ....*.
gi 148666741 243 LLPVSH 248
Cdd:PRK06833 111 LPAVHY 116
PRK08333 PRK08333
aldolase;
166-246 2.37e-05

aldolase;


Pssm-ID: 181393 [Multi-domain]  Cd Length: 184  Bit Score: 44.81  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 166 DHFLISPKGVSCSEVTASSLIKVNILGEVVekgSSCFPvdTTGFSLHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLP 245
Cdd:PRK08333  34 NLVFIKATGSVMDELTREQVAVIDLNGNQL---SSVRP--SSEYRLHLAVYRNRPDVRAIAHLHPPYSIVASTLLEEELP 108


                 .
gi 148666741 246 V 246
Cdd:PRK08333 109 I 109
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 314-416 1.59e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741  314 DQELEEYK-KE-------VERKKLEQEQEGEKDIATEKPGSPVKSTPASPVQSPSKA--GTKSPAVSPSKTSEDTKKTEV 383
Cdd:TIGR00601  56 DKTVKEYKiKEkdfvvvmVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAApaSAVEEKSPSEESATATAPESP 135

                          90       100       110
                  ....*....|....*....|....*....|...
gi 148666741  384 SEANTEPEPVKPEGLVVnGKEEEPSVEEALSKG 416
Cdd:TIGR00601 136 STSVPSSGSDAASTLVV-GSERETTIEEIMEMG 167
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 295-408 5.39e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 42.27  E-value: 5.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 295 ADTKDESEETVPNPFSQLTDQELEEYKKEVERKKLEQEQEGEKDIATEKPGSPvKSTPASPVQSPSkagtkSPAVSPSKT 374
Cdd:PRK13108 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAH-QVDAEAASAAPE-----EPAALASEA 408

                         90       100       110
                 ....*....|....*....|....*....|....
gi 148666741 375 SEDTKKTEVSEANTEPEPVKPEGLVVNGKEEEPS 408
Cdd:PRK13108 409 HDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA 442
sgaE PRK12348
L-ribulose-5-phosphate 4-epimerase; Reviewed
 141-256 1.17e-03

L-ribulose-5-phosphate 4-epimerase; Reviewed


Pssm-ID: 183460  Cd Length: 228  Bit Score: 40.55  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666741 141 YRLLdLYGWAQLSDtyvtlrVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVE---KGSScfpvDTtgfSLHSAIYA 217
Cdd:PRK12348  18 YGLV-TFTWGNVSA------IDRERGLVVIKPSGVAYETMKADDMVVVDMSGKVVEgeyRPSS----DT---ATHLELYR 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 148666741 218 ARPDVRCAIHLHTP-ATA-AVSAMKCGLLPVSHNALLVGDM 256
Cdd:PRK12348  84 RYPSLGGIVHTHSThATAwAQAGLAIPALGTTHADYFFGDI 124
araD PRK08193
L-ribulose-5-phosphate 4-epimerase AraD;
161-234 2.17e-03

L-ribulose-5-phosphate 4-epimerase AraD;


Pssm-ID: 236181  Cd Length: 231  Bit Score: 39.43  E-value: 2.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148666741 161 VSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVE---KGSScfpvDT-TgfslHSAIYAARPDVRCAIHLHTP-ATA 234
Cdd:PRK08193  32 IDRERGLFVIKPSGVDYDKMTAEDMVVVDLEGNVVEgklKPSS----DTpT----HLVLYKAFPEIGGIVHTHSRhATA 102
PRK08087 PRK08087
L-fuculose-phosphate aldolase;
165-237 8.15e-03

L-fuculose-phosphate aldolase;


Pssm-ID: 181226 [Multi-domain]  Cd Length: 215  Bit Score: 37.80  E-value: 8.15e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148666741 165 QDHFLISPKGVSCSEVTASSLIKVNILGEVvEKGSscFPvdTTGFSLHSAIYAARPDVRCAIHLHTPATAAVS 237
Cdd:PRK08087  35 QDGMLITPTGIPYEKLTESHIVFVDGNGKH-EEGK--LP--SSEWRFHMAAYQTRPDANAVVHNHAVHCTAVS 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH