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Conserved domains on  [gi|74199487|dbj|BAE41432|]
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unnamed protein product, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15370 super family cl33128
type III secretion system effector E3 ubiquitin transferase SlrP;
16-72 3.06e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


The actual alignment was detected with superfamily member PRK15370:

Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 41.61  E-value: 3.06e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74199487   16 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSP-----DELPQVGNLSLKGNPF 72
Cdd:PRK15370 366 PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESlphfrGEGPQPTRIIVEYNPF 427
 
Name Accession Description Interval E-value
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
16-72 3.06e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 41.61  E-value: 3.06e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74199487   16 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSP-----DELPQVGNLSLKGNPF 72
Cdd:PRK15370 366 PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESlphfrGEGPQPTRIIVEYNPF 427
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-74 1.17e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 36.84  E-value: 1.17e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199487  17 SQLNSLNLSFTGLKQVP--KGLPaKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 74
Cdd:COG4886 228 TNLETLDLSNNQLTDLPelGNLT-NLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTD 286
 
Name Accession Description Interval E-value
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
16-72 3.06e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 41.61  E-value: 3.06e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74199487   16 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSP-----DELPQVGNLSLKGNPF 72
Cdd:PRK15370 366 PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESlphfrGEGPQPTRIIVEYNPF 427
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-74 1.17e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 36.84  E-value: 1.17e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199487  17 SQLNSLNLSFTGLKQVP--KGLPaKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 74
Cdd:COG4886 228 TNLETLDLSNNQLTDLPelGNLT-NLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTD 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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