unnamed protein product [Mus musculus]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| HMG-box_WDHD1 | cd21993 | high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and ... |
74-136 | 4.22e-19 | ||
high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and similar proteins; WDHD1, also called acidic nucleoplasmic DNA-binding protein 1 (And-1), acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. : Pssm-ID: 438809 [Multi-domain] Cd Length: 62 Bit Score: 76.91 E-value: 4.22e-19
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| Name | Accession | Description | Interval | E-value | ||
| HMG-box_WDHD1 | cd21993 | high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and ... |
74-136 | 4.22e-19 | ||
high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and similar proteins; WDHD1, also called acidic nucleoplasmic DNA-binding protein 1 (And-1), acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Pssm-ID: 438809 [Multi-domain] Cd Length: 62 Bit Score: 76.91 E-value: 4.22e-19
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| HMG | smart00398 | high mobility group; |
77-134 | 8.39e-07 | ||
high mobility group; Pssm-ID: 197700 [Multi-domain] Cd Length: 70 Bit Score: 44.61 E-value: 8.39e-07
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| Name | Accession | Description | Interval | E-value | ||
| HMG-box_WDHD1 | cd21993 | high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and ... |
74-136 | 4.22e-19 | ||
high mobility group (HMG)-box found in WD repeat and HMG-box DNA-binding protein 1 (WDHD1) and similar proteins; WDHD1, also called acidic nucleoplasmic DNA-binding protein 1 (And-1), acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Pssm-ID: 438809 [Multi-domain] Cd Length: 62 Bit Score: 76.91 E-value: 4.22e-19
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| HMG-box_SSRP1-like | cd21994 | high mobility group (HMG)-box found in structure-specific recognition protein 1 (SSRP1) and ... |
77-130 | 4.46e-07 | ||
high mobility group (HMG)-box found in structure-specific recognition protein 1 (SSRP1) and similar proteins; SSRP1, also called FACT complex subunit SSRP1, chromatin-specific transcription elongation factor 80 kDa subunit, facilitates chromatin transcription complex 80 kDa subunit (FACT 80 kDa subunit or FACTp80), facilitates chromatin transcription complex subunit SSRP1, recombination signal sequence recognition protein 1, or T160, is a factor that facilitates transcript elongation through nucleosomes. It is a component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication, and DNA repair. Pssm-ID: 438810 [Multi-domain] Cd Length: 67 Bit Score: 45.37 E-value: 4.46e-07
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| HMG | smart00398 | high mobility group; |
77-134 | 8.39e-07 | ||
high mobility group; Pssm-ID: 197700 [Multi-domain] Cd Length: 70 Bit Score: 44.61 E-value: 8.39e-07
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| HMG-box_SF | cd00084 | high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found ... |
77-130 | 9.20e-06 | ||
high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenetically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4, and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Pssm-ID: 438789 [Multi-domain] Cd Length: 59 Bit Score: 41.74 E-value: 9.20e-06
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| HMG-box_BHMG1 | cd21977 | high mobility group (HMG)-box found in basic helix-loop-helix and HMG box domain-containing ... |
81-130 | 8.94e-03 | ||
high mobility group (HMG)-box found in basic helix-loop-helix and HMG box domain-containing protein 1 (BHMG1) and similar proteins; BHMG1 is an uncharacterized HMG-box containing protein that contains a degenerate basic motif not likely to bind DNA. Pssm-ID: 438793 [Multi-domain] Cd Length: 66 Bit Score: 33.44 E-value: 8.94e-03
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