|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
57-356 |
3.78e-157 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 445.60 E-value: 3.78e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 57 LAAAARLLSEKERELRDTESLLHDEN-EDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEA 135
Cdd:COG0216 45 IVEAYREYKKLLEDIEEAKELLEEESdPEMREMAKEELEELEARLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 136 MLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVA 215
Cdd:COG0216 125 ALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEE 295
Cdd:COG0216 205 VLPEAEEVDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQK 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74186873 296 ETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:COG0216 285 QQAEIAAERKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD--LDELIDAL 343
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
57-356 |
5.30e-150 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 427.57 E-value: 5.30e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 57 LAAAARLLSEKERELRDTESLLHDEN-EDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEA 135
Cdd:PRK00591 47 IVEAYREYKQAQEDLEEAKEMLEEESdPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 136 MLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVA 215
Cdd:PRK00591 127 ALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEE 295
Cdd:PRK00591 207 VLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQK 286
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74186873 296 ETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:PRK00591 287 AQAEEAATRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD--LDELIDAL 345
|
|
| prfA |
TIGR00019 |
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, ... |
70-356 |
1.21e-129 |
|
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors]
Pssm-ID: 129130 [Multi-domain] Cd Length: 360 Bit Score: 375.96 E-value: 1.21e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 70 ELRDTESLLHDENEDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQY 149
Cdd:TIGR00019 61 DIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 150 AAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINP 229
Cdd:TIGR00019 141 AESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 230 KDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEETAKRYNARKIQVG 309
Cdd:TIGR00019 221 ADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVG 300
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 74186873 310 TKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:TIGR00019 301 SGDRSERIRTYNFPQNRVTDHRINLTLYKLDEVLEGD--LDELIEAL 345
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
41-214 |
2.62e-64 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 203.00 E-value: 2.62e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 41 RRVGSEAGGLDAgypqLAAAARLLSEKERELRDTESLLHDEneDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGS 120
Cdd:pfam03462 25 QKLSKEYSELEP----IVEAYREYKQALEDLEEAKELLEDP--ELAELAEEELEELEKRLEELEEELKLLLLPKDPNDDK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 121 DLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPK 200
Cdd:pfam03462 99 NAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEISGEGAYGRLKFESGVHRVQRVPP 178
|
170
....*....|....
gi 74186873 201 TEKQGRIHTSTMTV 214
Cdd:pfam03462 179 TESQGRIHTSFATV 192
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
57-356 |
3.78e-157 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 445.60 E-value: 3.78e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 57 LAAAARLLSEKERELRDTESLLHDEN-EDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEA 135
Cdd:COG0216 45 IVEAYREYKKLLEDIEEAKELLEEESdPEMREMAKEELEELEARLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 136 MLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVA 215
Cdd:COG0216 125 ALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEE 295
Cdd:COG0216 205 VLPEAEEVDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQK 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74186873 296 ETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:COG0216 285 QQAEIAAERKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD--LDELIDAL 343
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
57-356 |
5.30e-150 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 427.57 E-value: 5.30e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 57 LAAAARLLSEKERELRDTESLLHDEN-EDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEA 135
Cdd:PRK00591 47 IVEAYREYKQAQEDLEEAKEMLEEESdPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 136 MLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVA 215
Cdd:PRK00591 127 ALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEE 295
Cdd:PRK00591 207 VLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQK 286
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74186873 296 ETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:PRK00591 287 AQAEEAATRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD--LDELIDAL 345
|
|
| prfA |
TIGR00019 |
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, ... |
70-356 |
1.21e-129 |
|
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors]
Pssm-ID: 129130 [Multi-domain] Cd Length: 360 Bit Score: 375.96 E-value: 1.21e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 70 ELRDTESLLHDENEDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQY 149
Cdd:TIGR00019 61 DIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 150 AAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINP 229
Cdd:TIGR00019 141 AESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 230 KDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEETAKRYNARKIQVG 309
Cdd:TIGR00019 221 ADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVG 300
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 74186873 310 TKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQSL 356
Cdd:TIGR00019 301 SGDRSERIRTYNFPQNRVTDHRINLTLYKLDEVLEGD--LDELIEAL 345
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
34-355 |
2.41e-75 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 237.37 E-value: 2.41e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 34 PLRAfleRRVGSEAGGLDAgypqlaaAARLLSEKERELRDTESLL----HDENEDLKKLAESEIALCQKQITELkhQIIS 109
Cdd:TIGR00020 48 QERA---QAVIKERSSLEA-------VLDTLEELKNSLEDLSELLelavEEDDEETFNELDAELKALEKKLAEL--ELRT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 110 LLvpSEEMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFE 189
Cdd:TIGR00020 116 ML--SGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 190 GGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTE-IKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQ 268
Cdd:TIGR00020 194 QGVHRLVRISPFDANGRRHTSFASVFVMPEVDDdIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 269 QERSQLKNRELAMKKLRARLYSMHLEEETAKRyNARKIQVGTKGRSEKIRTYNF-PQNRVTDHRINKSLHDLESFMQGDc 347
Cdd:TIGR00020 274 NDRSQHKNKDSAMKVLKAKLYELEMEKEQAEK-DAKEGEKSEIGWGSQIRSYVLhPYSMVKDLRTGYETGNVQAVLDGD- 351
|
....*...
gi 74186873 348 lLDDMIQS 355
Cdd:TIGR00020 352 -IDQFIEA 358
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
41-214 |
2.62e-64 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 203.00 E-value: 2.62e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 41 RRVGSEAGGLDAgypqLAAAARLLSEKERELRDTESLLHDEneDLKKLAESEIALCQKQITELKHQIISLLVPSEEMDGS 120
Cdd:pfam03462 25 QKLSKEYSELEP----IVEAYREYKQALEDLEEAKELLEDP--ELAELAEEELEELEKRLEELEEELKLLLLPKDPNDDK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 121 DLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPK 200
Cdd:pfam03462 99 NAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEISGEGAYGRLKFESGVHRVQRVPP 178
|
170
....*....|....
gi 74186873 201 TEKQGRIHTSTMTV 214
Cdd:pfam03462 179 TESQGRIHTSFATV 192
|
|
| RF-1 |
pfam00472 |
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ... |
222-331 |
9.41e-61 |
|
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Pssm-ID: 459823 [Multi-domain] Cd Length: 111 Bit Score: 191.10 E-value: 9.41e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 222 EIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSmhLEEETAKRY 301
Cdd:pfam00472 2 EIEIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTGIVVKCQDERSQHQNREKALKRLRARLYE--LEEEKEEEK 79
|
90 100 110
....*....|....*....|....*....|..
gi 74186873 302 NAR-KIQVGTKGRSEKIRTYNF-PQNRVTDHR 331
Cdd:pfam00472 80 KRRiKSQVGSGDRSEQIRTYNFkPQSRVKDHR 111
|
|
| PRK05589 |
PRK05589 |
peptide chain release factor 2; Provisional |
68-346 |
3.32e-60 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235520 [Multi-domain] Cd Length: 325 Bit Score: 196.95 E-value: 3.32e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 68 ERELRDTESLLH---DENEDLKKLAESEIALCQKQITELKHQIISllvpSEEMDGSDLILEVTAGVGGQEAMLFTSEMFD 144
Cdd:PRK05589 34 RNRIEDIEVLCEmmsEEDDEMKKEIISEVKNIKEEIDRFKIETLL----SGEYDRNNAILTLHSGVGGTDAQDWTEMLLR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 145 MYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEIK 224
Cdd:PRK05589 110 MYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQ 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 225 -LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYsmhleeETAKRYNA 303
Cdd:PRK05589 190 dIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQHSNKETAMKMLKSKLV------ELKERAHK 263
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 74186873 304 RKIQVGT-----KGRSEKIRTYNF-PQNRVTDHRINKSLHDLESFMQGD 346
Cdd:PRK05589 264 EKIEDLTgelkdMGWGSQIRSYVFhPYNLVKDHRTGVETSNVDSVMDGD 312
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
62-355 |
4.06e-59 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 194.18 E-value: 4.06e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 62 RLLSEKERELRDTESLLHDE-NEDLKKLAESEIALCQKQITELKHQiislLVPSEEMDGSDLILEVTAGVGGQEAMLFTS 140
Cdd:PRK06746 31 RQLDETFENLEITHELLKEEyDEDLHEELESEVKGLIQEMNEYELQ----LLLSDPYDKNNAILELHPGAGGTESQDWGS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 141 EMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQ- 219
Cdd:PRK06746 107 MLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEf 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 220 PTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEETAK 299
Cdd:PRK06746 187 NDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAE 266
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 74186873 300 RYNARKIQvGTKGRSEKIRTYNF-PQNRVTDHRINKSLHDLESFMQG--DCLLDDMIQS 355
Cdd:PRK06746 267 LDEIRGEQ-KEIGWGSQIRSYVFhPYSLVKDHRTNTEVGNVQAVMDGeiDPFIDAYLRS 324
|
|
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
39-357 |
5.78e-59 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 193.72 E-value: 5.78e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 39 LERRVGSEAGGLDAgypqLAAAARLLSEKERElrdtesllhdENEDLKKLAESEIALCQKQITELKHQIISllvpSEEMD 118
Cdd:PRK08787 2 LEKTVIGIADVLSG----LADAGELLDLAESE----------QDEDTALAVIADLDKYQAHVEKLEFQRMF----SGQMD 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 119 GSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRV 198
Cdd:PRK08787 64 GANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 199 PKTEKQGRIHTSTMTVAILPQPTE-IKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNR 277
Cdd:PRK08787 144 SPFDSDNRRHTSFTSVFVSPEVDDnIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 278 ELAMKKLRARLYSMHLEEETAKRyNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDclLDDMIQ-SL 356
Cdd:PRK08787 224 DNAMKMLAAKLYELEVQKRNAEK-DALEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGD--LDEFVEaSL 300
|
.
gi 74186873 357 K 357
Cdd:PRK08787 301 K 301
|
|
| PRK07342 |
PRK07342 |
peptide chain release factor 2; Provisional |
68-355 |
1.47e-57 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235997 [Multi-domain] Cd Length: 339 Bit Score: 190.47 E-value: 1.47e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 68 ERELRDTESL--LHDENEDLKKLAESEIALCQKQITELKHQIISLLvpSEEMDGSDLILEVTAGVGGQEAMLFTSEMFDM 145
Cdd:PRK07342 36 EQTLNDNIELiaMGEEEGDKSIVEDAEKTIRDLKDEIDRRQIDALL--SGEADANDTYLEVHAGAGGTESQDWASMLLRM 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 146 YQQYAAFKRWHFETLEYFPSELGGLRHASASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTE-IK 224
Cdd:PRK07342 114 YTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDnIE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 225 LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYsmhlEEETAKRYNAR 304
Cdd:PRK07342 194 VDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWSMLRARLY----EEELKKREEAT 269
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 74186873 305 KIQVGTK---GRSEKIRTYNF-PQNRVTDHRINKSLHDLESFMQGDclLDDMIQS 355
Cdd:PRK07342 270 NAAAASKtdiGWGHQIRSYVLqPYQLVKDLRTGVESTNPQDVLDGD--LNEFMEA 322
|
|
| PrfB |
COG1186 |
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ... |
224-338 |
7.82e-34 |
|
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440799 [Multi-domain] Cd Length: 140 Bit Score: 122.16 E-value: 7.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 224 KLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVH------------LPTGIISECQQERSQLKNRELAMKKLRARLYSM 291
Cdd:COG1186 20 EIEIPESDLRIDTYRASGAGGQNVNKVSSAVRLTHdiassslpdsrlTPGGIVVKAQEERSQHQNREDALKRLKALLYEA 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 74186873 292 HLEEETAKrynARKIQVGTKGR---SEKIRtynfpqNRVTDHRINKSLHD 338
Cdd:COG1186 100 ELEPKERR---ATKPTRGSKKRrlwGKQIR------SMVKDLRGNVDDGD 140
|
|
| release_prfH |
TIGR03072 |
putative peptide chain release factor H; Members of this protein family are bacterial proteins ... |
124-300 |
1.96e-22 |
|
putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]
Pssm-ID: 213768 Cd Length: 200 Bit Score: 93.68 E-value: 1.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 124 LEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSEL-GGLRHASASVGGPEAYRHM-KFEGGVHRVQRVPKT 201
Cdd:TIGR03072 3 LQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVpGTLRSALVSLDGEAAAALAdRWEGTLLWICPSPYR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 202 EKQGRiHTSTMTVAILPQPTEIklviNPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAM 281
Cdd:TIGR03072 83 PHHRR-KNWFIGVQRFSASEEA----TEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLAT 157
|
170
....*....|....*....
gi 74186873 282 KKLRARLYSMHLEEETAKR 300
Cdd:TIGR03072 158 LLLAVRLADLQQEQAAALR 176
|
|
| PRK09256 |
PRK09256 |
aminoacyl-tRNA hydrolase; |
224-286 |
6.61e-11 |
|
aminoacyl-tRNA hydrolase;
Pssm-ID: 181730 [Multi-domain] Cd Length: 138 Bit Score: 59.78 E-value: 6.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74186873 224 KLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIV------HLPT-----------------GIIS-ECQQERSQLKNREL 279
Cdd:PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRfdiaasSLPEfykerllalaghritkdGVIViKAQEFRSQERNRED 86
|
....*..
gi 74186873 280 AMKKLRA 286
Cdd:PRK09256 87 ALERLVA 93
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
65-118 |
6.05e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 38.85 E-value: 6.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 74186873 65 SEKERELRDTESLLHDENEDLKK-LAESEIALCQKQITELKHQIISLLVPSEEMD 118
Cdd:TIGR04523 534 KEKESKISDLEDELNKDDFELKKeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQ 588
|
|
| |
