|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
209-1048 |
5.34e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.87 E-value: 5.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 209 ACSNFLP-ALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAvHELVKEGNtdrAADRVRNLIKALETGEPHNP 287
Cdd:TIGR02917 16 ACGDQSPeELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLG-KIYLALGD---YAAAEKELRKALSLGYPKNQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 288 -NLHLKKILVISRlcgrhqVVHRLVSGFLERIFMATPSCALVATELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGS 366
Cdd:TIGR02917 92 vLPLLARAYLLQG------KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 367 IWCQILQGQLEEAahqLEFLKEV-QQSLGKSELLVFLQALVAAKKQRleQEATALLKEAVEVHFSSMQGLalspeyfekl 445
Cdd:TIGR02917 166 AQLALAENRFDEA---RALIDEVlTADPGNVDALLLKGDLLLSLGNI--ELALAAYRKAIALRPNNIAVL---------- 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 446 dpLFLVCIAKEYLHFCPKQP-------RSPGQLVSPLLKqvAMI-------------LSPVVKVAPAMMEPLYVTAQVKF 505
Cdd:TIGR02917 231 --LALATILIEAGEFEEAEKhadallkKAPNSPLAHYLK--ALVdfqkknyedaretLQDALKSAPEYLPALLLAGASEY 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 506 LSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLElgvSHNFQVRDHPLYHFIKARALNKTGDYAEAI 585
Cdd:TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS---PALGLDPDDPAALSLLGEAYLALGDFEKAA 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 586 KTL-KMIIKVPTSKAEEGRKSQSPSVRPSERASILlELVEALRLNGEL--------------HEATKIMQDAINEFSGTP 650
Cdd:TIGR02917 384 EYLaKATELDPENAAARTQLGISKLSQGDPSEAIA-DLETAAQLDPELgradlllilsylrsGQFDKALAAAKKLEKKQP 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 651 ---------------------------EEMRITVANV-------DLALSKGNVDLALNMLRGITPKQPCYTEAKEKMASI 696
Cdd:TIGR02917 463 dnaslhnllgaiylgkgdlakareafeKALSIEPDFFpaaanlaRIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 697 YLHTRKDVRlyigcYVELCEHLPGPHSS-----LLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQY 771
Cdd:TIGR02917 543 YLRTGNEEE-----AVAWLEKAAELNPQeiepaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 772 AKAINYYEAAQKISGQDFLCCELAELLLKLKK-YHKAEKVLKQALERDSgvkdipsmiNEVKCLLLLAKVYKSHKKEEvm 850
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKnYAKAITSLKRALELKP---------DNTEAQIGLAQLLLAAKRTE-- 686
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 851 ETLNLALDLQSrilkrvpleqsemipfQNQLAASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLL 930
Cdd:TIGR02917 687 SAKKIAKSLQK----------------QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASG 750
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 931 GQLDLcEQRCAPLLEMEQTHERAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSgkleEAPAFFEL 1010
Cdd:TIGR02917 751 NTAEA-VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL----KDPRALEY 825
|
890 900 910
....*....|....*....|....*....|....*...
gi 26325882 1011 AKKVSSRVPLEPGFNYCQGIYFWHIGQPNEALRFLNKA 1048
Cdd:TIGR02917 826 AERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
725-1048 |
1.25e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.34 E-value: 1.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 725 LLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKK 803
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELaQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 804 YHKAEKVLKQALERDSgvkdipsmiNEVKCLLLLAKVYKSHKKEEvmetlnLALDLQSRILKRVPLEqsemipfqnqlaA 883
Cdd:COG2956 92 LDRAEELLEKLLELDP---------DDAEALRLLAEIYEQEGDWE------KAIEVLERLLKLGPEN------------A 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 884 SICIQIGEHHLAEKDYDSALKSYKDALAYSPtdskvvlelahlylllgqldlceqrcapllemeqTHERAAVMLADLMFR 963
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDP----------------------------------DCARALLLLAELYLE 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 964 RQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFElakKVSSRVPLEPGFNYCQGIYFwHIGQPNEALR 1043
Cdd:COG2956 191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR---KALELDPSDDLLLALADLLE-RKEGLEAALA 266
|
....*
gi 26325882 1044 FLNKA 1048
Cdd:COG2956 267 LLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
498-818 |
9.64e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 9.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 498 YVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIKARALNK 577
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 578 TGDYAEAIKTLKMIIKVPtskaeegrksqspsvrpSERASILLELVEALRLNGELHEATKIMQDAINEfsgTPEEMRITV 657
Cdd:COG2956 89 AGLLDRAEELLEKLLELD-----------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL---GPENAHAYC 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 658 ANVDLALSKGNVDLALNMLRGITPKQPCYTEAkekmasiylhtrkdvrlyigcyvelcehlpgphsSLLLGDAFMNIQEP 737
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARA----------------------------------LLLLAELYLEQGDY 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 738 EKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLKKYHKAEKVLKQALER 817
Cdd:COG2956 195 EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
|
.
gi 26325882 818 D 818
Cdd:COG2956 275 H 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
109-775 |
2.63e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 87.83 E-value: 2.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 109 SSTALYYASLFLWFMGHHDKAREYVDHMLKVSSGSKEGYVLKGWVDLTSSKphvVKKSIKYLEQGTQDTKDVLG--LMGK 186
Cdd:TIGR02917 226 NIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN---YEDARETLQDALKSAPEYLPalLLAG 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 187 ATYFmTQQNFSGALEVANQVTMACSNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAvHELVKEGNTD 266
Cdd:TIGR02917 303 ASEY-QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG-EAYLALGDFE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 267 RAAdrvRNLIKALETgEPHNPNLHLKK----------------ILVISRLCGRHQVVHR-LVSGFLERIFMA-------- 321
Cdd:TIGR02917 381 KAA---EYLAKATEL-DPENAAARTQLgisklsqgdpseaiadLETAAQLDPELGRADLlLILSYLRSGQFDkalaaakk 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 322 ----TPSCALVATELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGSIWCQILQGQLEeAAHQlEFLKEVQQSLGKSE 397
Cdd:TIGR02917 457 lekkQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD-DAIQ-RFEKVLTIDPKNLR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 398 LLVFLQALVAAKKQrlEQEATALLKEAVEVHFSSMQG-LALSPEYFEKLDPLFLVCIAKEYLHFCPKQPRSPGQLVSPLL 476
Cdd:TIGR02917 535 AILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 477 --KQVAMILS---PVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCshcl 551
Cdd:TIGR02917 613 aaGDLNKAVSsfkKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA---- 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 552 eLGVSHNFQVR--DHPLYHFIKARALNKTGDYAEAIKTLKMIIKVptskaeegrksqSPSvrpserASILLELVEALRLN 629
Cdd:TIGR02917 689 -KKIAKSLQKQhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKR------------APS------SQNAIKLHRALLAS 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 630 GELHEATKIMQDAINEfsgTPEEMRITVANVDLALSKGNVDLALNMLRGITPKQPCYTEAKEKMASIYLHtRKDVRLYIg 709
Cdd:TIGR02917 750 GNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALE- 824
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26325882 710 cYVELCEHL-PGPHSSL-LLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAI 775
Cdd:TIGR02917 825 -YAERALKLaPNIPAILdTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
482-751 |
3.58e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 3.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 482 ILSPVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqv 561
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 562 RDHPLYHFIKARALNKTGDYAEAIKTLKMIIKVptskaeegrksqspsvrPSERASILLELVEALRLNGELHEATKIMQD 641
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 642 AINEfsgTPEEMRITVANVDLALSKGNVDLALNMLRGITPKQPCYTEAKEKMASIYLHtRKDVRLYIGCYVELCEHLPGP 721
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260 270
....*....|....*....|....*....|
gi 26325882 722 HSSLLLGDAFMNIQEPEKALEVYDEAYRKN 751
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
488-1301 |
4.84e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 4.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 488 KVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNFqvrDHPLY 567
Cdd:TIGR02917 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP---NNIAV 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 568 HFIKARALNKTGDYAEAIKTLKMIIKvptskaeegRKSQSPsvrpserasillelvEALRLNGELHEATKIMQDAINefs 647
Cdd:TIGR02917 230 LLALATILIEAGEFEEAEKHADALLK---------KAPNSP---------------LAHYLKALVDFQKKNYEDARE--- 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 648 gtpeemritvaNVDLALSKGNVDLALNMLRGITpkqpcyteakekmaSIYLHTRKDVRLYIGCYVELCEHLPgpHSSLLL 727
Cdd:TIGR02917 283 -----------TLQDALKSAPEYLPALLLAGAS--------------EYQLGNLEQAYQYLNQILKYAPNSH--QARRLL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 728 GDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLKKYH-K 806
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPsE 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 807 AEKVLKQALERDSGVKDIPsminevkclLLLAKVY-KSHKkeevmetLNLALDLQSRILKRVPleqsemipfqNQlaASI 885
Cdd:TIGR02917 416 AIADLETAAQLDPELGRAD---------LLLILSYlRSGQ-------FDKALAAAKKLEKKQP----------DN--ASL 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 886 CIQIGEHHLAEKDYDSALKSYKDALaysptdskvvlelahlylllgqldlceqrcapllEMEQTHERAAVMLADLMFRRQ 965
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKAL----------------------------------SIEPDFFPAAANLARIDIQEG 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 966 NYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSSRvPLEPGFNYCQgiYFWHIGQPNEALRFL 1045
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQ--YYLGKGQLKKALAIL 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1046 NKA-----RKDSTWGQLATCYMVQiclnpdneivggeafeslvGDSNSAsrkesqqhgVRTAEKLLREfyphsesgqtql 1120
Cdd:TIGR02917 591 NEAadaapDSPEAWLMLGRAQLAA-------------------GDLNKA---------VSSFKKLLAL------------ 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1121 rllqnlcllatrekanvevalgafiemaqaEKDSIPALLAMAQAYILLKQVPKARTQLKRlakvpwTVDEAEDLEKSWLL 1200
Cdd:TIGR02917 631 ------------------------------QPDSALALLLLADAYAVMKNYAKAITSLKR------ALELKPDNTEAQIG 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1201 LADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAwkYSHQANPAIGFKLAFNYLKDKKF 1280
Cdd:TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA--LKRAPSSQNAIKLHRALLASGNT 752
|
810 820
....*....|....*....|.
gi 26325882 1281 VDAIEVCHSVLTEHPKYPKIR 1301
Cdd:TIGR02917 753 AEAVKTLEAWLKTHPNDAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
661-980 |
8.82e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 73.22 E-value: 8.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 661 DLALSKGNVDLALNMLRGITPKQPCYTEAKEKMASIYLhTRKDVRLYIGCYVELCEHLPG-PHSSLLLGDAFMNIQEPEK 739
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYR-RRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 740 ALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKKYHKAEKVLKQALERD 818
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 819 SgvkdipsmiNEVKCLLLLAKVY-KSHKKEEVMETLNLALDlqsrilkrvpleqsemipfQNQLAASICIQIGEHHLAEK 897
Cdd:COG2956 175 P---------DCARALLLLAELYlEQGDYEEAIAALERALE-------------------QDPDYLPALPRLAELYEKLG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 898 DYDSALKSYKDALAYSPTDSkvvlelahlylllgqldlceqrcapllemeqtherAAVMLADLMFRRQNYETAINLYHQV 977
Cdd:COG2956 227 DPEEALELLRKALELDPSDD-----------------------------------LLLALADLLERKEGLEAALALLERQ 271
|
...
gi 26325882 978 LEK 980
Cdd:COG2956 272 LRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1140-1310 |
2.13e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1140 ALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLAKVpwtvdeAEDLEKSWLLLADIYCQGGKFDLALELLR 1219
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL------GPENAHAYCELAELYLEQGDYDEAIEALE 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1220 RCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQANPAIgFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPK 1299
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
170
....*....|...
gi 26325882 1300 IRE--EILEKAQG 1310
Cdd:COG2956 248 LLAlaDLLERKEG 260
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-428 |
1.08e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 114 YYASLFLWFMGHHDKAREYVDHMLKVSSGSKEGYVLKGWVDLTSSKphvVKKSIKYLEQGTQDTKD-VLGLMGKATYFMT 192
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE---YDRAIRIHQKLLERDPDrAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 193 QQNFSGALEVANQVTMACSNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVhELVKEGNTDRAadrV 272
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE-LYLEQGDYDEA---I 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 273 RNLIKALEtgephnpnlhlkkilvisrlcgrhqvvhrlvsgflerifmATPSCALVATELGYLFILHQQVKEACLWYKEA 352
Cdd:COG2956 165 EALEKALK----------------------------------------LDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 26325882 353 MKLEENRLAALAGSIWCQILQGQLEEAahqLEFLKEVQQSLGKSELLVFLQALVAAKKQrlEQEATALLKEAVEVH 428
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLERKEG--LEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1132-1306 |
2.25e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1132 REKANVEVALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLakvpwtVDEAEDLEKSWLLLADIYCQGGKF 1211
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1212 DLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYsHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVL 1291
Cdd:COG2956 127 EKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLAELYLEQGDYEEAIAALERAL 205
|
170
....*....|....*
gi 26325882 1292 TEHPKYPKIREEILE 1306
Cdd:COG2956 206 EQDPDYLPALPRLAE 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
887-1223 |
3.19e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.52 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 887 IQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLLGQLDLCEQRCAPLLEMEQTHERAAVMLADLMFRRQN 966
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 967 YETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEApafFELAKKVSSRVPLEPGFNYCQGIYFWHIGQPNEALRFLN 1046
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA---IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1047 KARKdstwgqlatcymvqicLNPDNeivggeafeslvgdsnsasrkesqqhgVRtAEKLLREFYphsesgqtqlrllqnl 1126
Cdd:COG2956 169 KALK----------------LDPDC---------------------------AR-ALLLLAELY---------------- 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1127 cllatREKANVEVALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLAkvpwtvdEAEDLEKSWLLLADIYC 1206
Cdd:COG2956 189 -----LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLALADLLE 256
|
330
....*....|....*..
gi 26325882 1207 QGGKFDLALELLRRCLQ 1223
Cdd:COG2956 257 RKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1136-1301 |
3.40e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.52 E-value: 3.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1136 NVEVALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLakvpwtVDEAEDLEKSWLLLADIYCQGGKFDLAL 1215
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL------LERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1216 ELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQaNPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHP 1295
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDP 175
|
....*.
gi 26325882 1296 KYPKIR 1301
Cdd:COG2956 176 DCARAL 181
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
882-1050 |
4.49e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 4.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 882 AASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDskvvlelahlylllgqldlceqrcapllemeqthERAAVMLADLM 961
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDN----------------------------------PEAFALLGEIL 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 962 FRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSsrvPLEPGFNYCQGIYFWHIGQPNEA 1041
Cdd:COG4783 49 LQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEA 125
|
....*....
gi 26325882 1042 LRFLNKARK 1050
Cdd:COG4783 126 IAALEKALE 134
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
475-677 |
1.58e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 475 LLKQVAMILSPVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELG 554
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 555 VSHNfqvRDHPLYHFIKARALNKTGDYAEAIKTLKMIIKvptskaeegrksQSPsvrpsERASILLELVEALRLNGELHE 634
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALE------------QDP-----DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 26325882 635 ATKIMQDAINEFSGTPEEMRItvanVDLALSKGNVDLALNMLR 677
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLE 269
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
952-1062 |
3.79e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 3.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 952 RAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEApafFELAKKVSSRVPLEPGFNYCQGIY 1031
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEA---IVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110
....*....|....*....|....*....|....*.
gi 26325882 1032 FWHIGQPNEALRFLNKARKDS-----TWGQLATCYM 1062
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDpehpeAYLRLARAYR 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
851-1119 |
4.24e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.78 E-value: 4.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 851 ETLNLALDLQSRILKRVPLEQSEMIPFQNQLAASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLL 930
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 931 GQLDLCEQRCAPLLEMEQTHERAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFEL 1010
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1011 AKKvssrvpLEPGFNYCQGiyfwhigqpnealRFLNKARKDSTWGQLATCYMVQICLNPDNEIVGGEAFESLVGDSNSAS 1090
Cdd:COG3914 206 ALE------LDPDNADAHS-------------NLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAEL 266
|
250 260
....*....|....*....|....*....
gi 26325882 1091 RKESQQHGVRTAEKLLREFYPHSESGQTQ 1119
Cdd:COG3914 267 LALARAWAQLVAAAAAPELPPPPNPRDPD 295
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-643 |
4.25e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 4.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 492 AMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIK 571
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 26325882 572 ARALNKTGDYAEAIKTLKMIIKvptskaeegrksQSPsvrpsERASILLELVEALRLNGELHEATKIMQDAI 643
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALK------------LDP-----EHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1156-1297 |
7.09e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 7.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1156 PALLAMAQAYILLKQVPKARTQLKRLakvpwtVDEAEDLEKSWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYM 1235
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKA------LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 26325882 1236 GFIMEKEQSYKDAATNYELAWKYsHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKY 1297
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
883-1050 |
1.78e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.94 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 883 ASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLLGQLDLCEQRCAPLLEMEQTHERAAVMLADLMF 962
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 963 RRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSsrvPLEPGFNYCQGIYFWHIGQPNEAL 1042
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDADALYNLGIALEKLGRYEEAL 164
|
....*...
gi 26325882 1043 RFLNKARK 1050
Cdd:COG0457 165 ELLEKLEA 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
482-593 |
4.06e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 4.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 482 ILSPVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqv 561
Cdd:COG4783 26 LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD--- 102
|
90 100 110
....*....|....*....|....*....|..
gi 26325882 562 RDHPLYHFIKARALNKTGDYAEAIKTLKMIIK 593
Cdd:COG4783 103 PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
662-788 |
4.14e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 662 LALSKGNVDLALNMLRGITPKQPCYTEAKEKMASIYLHTrKDVRLYIGCYVELCEHLPG-PHSSLLLGDAFMNIQEPEKA 740
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 26325882 741 LEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQD 788
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
944-1058 |
4.72e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 4.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 944 LEMEQTHERAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEApafFELAKKVSSRVPLEPG 1023
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEA---EELLERALALDPDNPE 86
|
90 100 110
....*....|....*....|....*....|....*....
gi 26325882 1024 FNYCQGIYFWHIGQPNEALRFLNKARK----DSTWGQLA 1058
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAllpaDAPARLLE 125
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
377-593 |
5.88e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.31 E-value: 5.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 377 EEAAHQLEFLKEVQQSLGKSELLVFLQALVAAKKQRLEQ---EATALLKEAVEVHFSSMQGLALSPEYFEKLDPLFLVCI 453
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAalgLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 454 AKEYLHFCPKQPRspgqlvsplLKQVAMILSPVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLL 533
Cdd:COG3914 81 LELAALLLQALGR---------YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 534 MSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIKARALNKTGDYAEAIKTLKMIIK 593
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELD---PDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
725-818 |
8.52e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 8.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 725 LLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLK-K 803
Cdd:COG4783 42 ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgR 121
|
90
....*....|....*
gi 26325882 804 YHKAEKVLKQALERD 818
Cdd:COG4783 122 PDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
725-784 |
2.85e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 2.85e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 725 LLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKI 784
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
331-645 |
5.98e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.42 E-value: 5.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 331 ELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGSIWCQILQGQLEEAAHQLEFLKEVQQslgKSELLVFLQALVAAKK 410
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP---DRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 411 QRLEqEATALLKEAVEVHFSSMQGLALSPEYFEKLdplflvciaKEYLhfcpkqprspgQLVSPLLKqvamilspVVKVA 490
Cdd:COG2956 90 GLLD-RAEELLEKLLELDPDDAEALRLLAEIYEQE---------GDWE-----------KAIEVLER--------LLKLG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 491 PAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFI 570
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---PDYLPALPR 217
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 26325882 571 KARALNKTGDYAEAIKTLKMIIKvptskaeegrksQSPSvrpserASILLELVEALRLNGELHEATKIMQDAINE 645
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALE------------LDPS------DDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1091-1301 |
6.98e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 6.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1091 RKESQQHGVRTAEKLLREFYPHSESGQTQLRLLQNLCLLATREKANVEVALGAFIEMAQAEKDSIPALLAMAQAYILLKQ 1170
Cdd:COG3914 14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1171 VPKARTQLKRLakvpwtVDEAEDLEKSWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAAT 1250
Cdd:COG3914 94 YEEALALYRRA------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 26325882 1251 NYELAWKYSHQaNPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPKIR 1301
Cdd:COG3914 168 ALRRALELDPD-NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
727-820 |
1.01e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.55 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 727 LGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKKYH 805
Cdd:COG0457 48 LGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLgLALLELGRYD 127
|
90
....*....|....*
gi 26325882 806 KAEKVLKQALERDSG 820
Cdd:COG0457 128 EAIEAYERALELDPD 142
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
495-594 |
1.83e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 495 EPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIKARA 574
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPEALYLLGLA 94
|
90 100
....*....|....*....|
gi 26325882 575 LNKTGDYAEAIKTLKMIIKV 594
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
727-912 |
2.27e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 727 LGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKKYH 805
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLgLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 806 KAEKVLKQALERDSgvkdipsmiNEVKCLLLLAKVYKSHKK-EEVMETLNLALDLQSRIlkrvpleqsemipfqnqlaAS 884
Cdd:COG0457 94 EALEDYDKALELDP---------DDAEALYNLGLALLELGRyDEAIEAYERALELDPDD-------------------AD 145
|
170 180
....*....|....*....|....*...
gi 26325882 885 ICIQIGEHHLAEKDYDSALKSYKDALAY 912
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAA 173
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
887-984 |
2.40e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 887 IQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLLGQLDLCEQRCAPLLEMEQTHERAAVMLADLMFRRQN 966
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
|
90
....*....|....*...
gi 26325882 967 YETAINLYHQVLEKAPDN 984
Cdd:COG4235 101 YAEAIAAWQKLLALLPAD 118
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
804-1296 |
2.90e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 804 YHKAEKVLKQALERDsgvkdipsmINEVKCLLLLAKVY-KSHKKEEVMETLNlALDLQSrilkrvpleqsemipfqNQLA 882
Cdd:TIGR02917 72 YAAAEKELRKALSLG---------YPKNQVLPLLARAYlLQGKFQQVLDELP-GKTLLD-----------------DEGA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 883 ASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVLELAHLYLLLGQLDLCEQRCAPLLEMEQTHERAAVMLADLMF 962
Cdd:TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 963 RRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKvssRVPLEPGFNYCQGIYFWHIGQPNEAL 1042
Cdd:TIGR02917 205 SLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK---KAPNSPLAHYLKALVDFQKKNYEDAR 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1043 RFLNKARKdstwgqlatcymvqicLNPDNeivggeaFESLVgdsnSASRKESQQHGVRTAEKLLREF---YPHSESGQTQ 1119
Cdd:TIGR02917 282 ETLQDALK----------------SAPEY-------LPALL----LAGASEYQLGNLEQAYQYLNQIlkyAPNSHQARRL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1120 LRLLQNLCLLATREKANVEVALGafiemaQAEKDsiPALLAMA-QAYILLKQVPKARTQLKRLAKV-PWTVDEA------ 1191
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALG------LDPDD--PAALSLLgEAYLALGDFEKAAEYLAKATELdPENAAARtqlgis 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1192 -----------EDLEK----------SWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAAT 1250
Cdd:TIGR02917 407 klsqgdpseaiADLETaaqldpelgrADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 26325882 1251 NYELAWKySHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPK 1296
Cdd:TIGR02917 487 AFEKALS-IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
725-818 |
4.19e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 4.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 725 LLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKK 803
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLgLALLKAGD 87
|
90
....*....|....*
gi 26325882 804 YHKAEKVLKQALERD 818
Cdd:COG4783 88 YDEALALLEKALKLD 102
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
960-1050 |
7.36e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 7.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 960 LMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFfelaKKVSSRVPLEPGFNYCQGIYFWHIGQPN 1039
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL----EKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|.
gi 26325882 1040 EALRFLNKARK 1050
Cdd:COG3063 77 EALAYLERALE 87
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-593 |
9.40e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 508 GELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMcSHCLELGVSHNfqvRDHPLYHFIKARALNKTGDYAEAIKT 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*.
gi 26325882 588 LKMIIK 593
Cdd:COG3063 82 LERALE 87
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1140-1288 |
1.51e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1140 ALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRlakvpwTVDEAEDLEKSWLLLADIYCQGGKFDLALELLR 1219
Cdd:COG0457 27 AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYD 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 26325882 1220 RCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYShQANPAIGFKLAFNYLKDKKFVDAIEVCH 1288
Cdd:COG0457 101 KALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD-PDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
329-589 |
2.08e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 329 ATELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGSIWCQILQGQLEEAAHQLEFLKEVQQSLGKSELLVFLQALVAA 408
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 409 KKQRLE-----QEATALLKEAvevhfssmqgLALSPEYFEKLDPLFLVCIAKEylhfcpkqprspgqlvspLLKQVAMIL 483
Cdd:COG3914 84 AALLLQalgryEEALALYRRA----------LALNPDNAEALFNLGNLLLALG------------------RLEEALAAL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 484 SPVVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNF----AMCSHCLELgVSHNF 559
Cdd:COG3914 136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeeaiAAYRRALEL-DPDNA 214
|
250 260 270
....*....|....*....|....*....|
gi 26325882 560 QVRDHPLYHFIKARALNKTGDYAEAIKTLK 589
Cdd:COG3914 215 DAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1140-1255 |
2.83e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1140 ALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLAKVpwtvdEAEDLEkSWLLLADIYCQGGKFDLALELLR 1219
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPDNAD-ALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110
....*....|....*....|....*....|....*.
gi 26325882 1220 RCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELA 1255
Cdd:COG4235 76 RALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1145-1295 |
2.96e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1145 IEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLAKVPWTVDEAEDLEKSWLLLADIYCQGGKFDLALELLRRCLQY 1224
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 26325882 1225 NKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYShQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHP 1295
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
869-1007 |
4.12e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 47.50 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 869 LEQSEMIPFQNQLAASICiQIGEHHLAEKDYDSALKSYKDALAYSPtdskvvlelahlylllgqldlceqRCApllemeq 948
Cdd:PRK11788 167 LEKLGGDSLRVEIAHFYC-ELAQQALARGDLDAARALLKKALAADP------------------------QCV------- 214
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 949 theRAAVMLADLMFRRQNYETAINLYHQVLEKAPDNF-LVLNKLVDLLRRSGKLEEAPAF 1007
Cdd:PRK11788 215 ---RASILLGDLALAQGDYAAAIEALERVEEQDPEYLsEVLPKLMECYQALGDEAEGLEF 271
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1140-1223 |
5.99e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 5.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1140 ALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKR-LAKVPwtvdeaeDLEKSWLLLADIYCQGGKFDLALELL 1218
Cdd:COG4235 36 ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERaLALDP-------DNPEALYLLGLAAFQQGDYAEAIAAW 108
|
....*
gi 26325882 1219 RRCLQ 1223
Cdd:COG4235 109 QKLLA 113
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
212-424 |
6.39e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 212 NFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVhELVKEGNTDRAadrVRNLIKALETgEPHNPNLHL 291
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEA---LADYEQALEL-DPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 292 KKILVISRLcGRHQVVHRLvsgfLERIFMATPSCALVATELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGSIWCQI 371
Cdd:COG0457 81 NLGLALQAL-GRYEEALED----YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 26325882 372 LQGQLEEAAHQLEFLKEVQQSLGKSELLVFLQALVAAKKQRLEQEATALLKEA 424
Cdd:COG0457 156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
751-1009 |
6.75e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 751 NPHDASLVSRIGQAYVKTHQYAKAINYYEaaqkisgqdflccelaelllklkkyhkaekvlkQALERDSgvkdipsmiNE 830
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYE---------------------------------KALELDP---------DD 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 831 VKCLLLLAKVYKSHKK-EEVMETLNLALDLQSRilkrvpleqsemipfqnqlAASICIQIGEHHLAEKDYDSALKSYKDA 909
Cdd:COG0457 42 AEALYNLGLAYLRLGRyEEALADYEQALELDPD-------------------DAEALNNLGLALQALGRYEEALEDYDKA 102
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 910 LAYSPTDSkvvlelahlylllgqldlceqrcapllemeqtheRAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLN 989
Cdd:COG0457 103 LELDPDDA----------------------------------EALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
250 260
....*....|....*....|
gi 26325882 990 KLVDLLRRSGKLEEAPAFFE 1009
Cdd:COG0457 149 NLGIALEKLGRYEEALELLE 168
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
951-1052 |
7.74e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 951 ERAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSsrvPLEPGFNYCQGI 1030
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAYSNLAA 130
|
90 100
....*....|....*....|..
gi 26325882 1031 YFWHIGQPNEALRFLNKARKDS 1052
Cdd:COG5010 131 LLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1198-1304 |
8.13e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1198 WLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYsHQANPAIGFKLAFNYLKD 1277
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 26325882 1278 KKFVDAIEVCHSVLTEHPKYPKIREEI 1304
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
513-593 |
8.63e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 8.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 513 AQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIKARALNKTGDYAEAIKTLKMII 592
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
.
gi 26325882 593 K 593
Cdd:COG4235 79 A 79
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
730-818 |
1.17e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 730 AFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLKKYHKAEK 809
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 26325882 810 VLKQALERD 818
Cdd:COG3063 81 YLERALELD 89
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-593 |
1.22e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 486 VVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHP 565
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*...
gi 26325882 566 LYHFIKARALNKTGDYAEAIKTLKMIIK 593
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALE 138
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
730-818 |
1.24e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 730 AFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLK-KYHKAE 808
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLgQDDEAK 142
|
90
....*....|
gi 26325882 809 KVLKQALERD 818
Cdd:COG5010 143 AALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
739-883 |
1.76e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 739 KALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELA-ELLLKLKKYHKAEKVLKQALER 817
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLaEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 26325882 818 DSgvkdipsmiNEVKCLLLLAKVYKSHKKEEvmetlnLALDLQSRILKRVPlEQSEMIPFQNQLAA 883
Cdd:COG4235 81 DP---------DNPEALYLLGLAAFQQGDYA------EAIAAWQKLLALLP-ADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
614-781 |
2.24e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.75 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 614 ERASILLELVEALRLNGELHEATKIMQDAINEFSGTPEEMRITVANVDLALSKGNVDLALNMLRGITPKQPCYTEAKEKM 693
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 694 ASIyLHTRKDVRLYIGCYVELCEHLPGPHSSLL-LGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYA 772
Cdd:COG3914 119 GNL-LLALGRLEEALAALRRALALNPDFAEAYLnLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
....*....
gi 26325882 773 KAINYYEAA 781
Cdd:COG3914 198 EAIAAYRRA 206
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
508-593 |
2.61e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.03 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 508 GELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPLYHFIKARALNKTGDYAEAIKT 587
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAYSNLAALLLSLGQDDEAKAA 144
|
....*.
gi 26325882 588 LKMIIK 593
Cdd:COG5010 145 LQRALG 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1193-1301 |
2.92e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1193 DLEKSWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQaNPAIGFKLAF 1272
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 26325882 1273 NYLKDKKFVDAIEVCHSVLTEHPKYPKIR 1301
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-593 |
3.14e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 487 VKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNfqvRDHPL 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*..
gi 26325882 567 YHFIKARALNKTGDYAEAIKTLKMIIK 593
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALE 104
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
738-1046 |
3.84e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.07 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 738 EKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQkisgqdflccelaelllklkkyhkaekvlkqALER 817
Cdd:PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL-------------------------------ALDP 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 818 DSgvkdipsminevkcllllakvYKSHKKEEVMETLN--LALDLQSRILK--RVPLEQSemipfQNQLAASI-------C 886
Cdd:PRK11447 335 HS---------------------SNRDKWESLLKVNRywLLIQQGDAALKanNLAQAER-----LYQQARQVdntdsyaV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 887 IQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVVlelahlylllgqldlceqRCAPLLEMEQTHERAAVML--------- 957
Cdd:PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV------------------RGLANLYRQQSPEKALAFIaslsasqrr 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 958 -----------------ADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFelaKKVSSRVPL 1020
Cdd:PRK11447 451 siddierslqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM---RRLAQQKPN 527
|
330 340
....*....|....*....|....*.
gi 26325882 1021 EPGFNYCQGIYFWHIGQPNEALRFLN 1046
Cdd:PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLN 553
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
944-1011 |
4.27e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.25 E-value: 4.27e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26325882 944 LEMEQTHERAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELA 1011
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-545 |
4.73e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 4.73e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 486 VVKVAPAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFA 545
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1197-1306 |
6.08e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1197 SWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQANPAIgFKLAFNYLK 1276
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 26325882 1277 DKKFVDAIEVCHSVLTEHPKYPKIREEILE 1306
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1140-1313 |
7.46e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1140 ALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLakvpwtVDEAEDLEKSWLLLADIYCQGGKFDLALELLR 1219
Cdd:COG0457 61 ALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKA------LELDPDDAEALYNLGLALLELGRYDEAIEAYE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1220 RCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPK 1299
Cdd:COG0457 135 RALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
170
....*....|....
gi 26325882 1300 IREEILEKAQGSLR 1313
Cdd:COG0457 215 TLAALAELLLLALA 228
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1196-1308 |
8.83e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1196 KSWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQaNPAIGFKLAFNYL 1275
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD-NPEALYLLGLAAF 96
|
90 100 110
....*....|....*....|....*....|....*
gi 26325882 1276 KDKKFVDAIEVCHSVLTEHPKYPKIR--EEILEKA 1308
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARllEASIAEA 131
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
727-814 |
1.49e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 727 LGDAFMNIQEPEKALEVYDEAYRKNP-HDASLVSRiGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELLLKLKKYH 805
Cdd:COG4785 113 RGLAYLLLGDYDAALEDFDRALELDPdYAYAYLNR-GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
|
....*....
gi 26325882 806 KAEKVLKQA 814
Cdd:COG4785 192 KALALLLED 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
183-291 |
1.59e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 183 LMGKATYFMTQQNFSGALEVANQVTMACSNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVHeLVKE 262
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA-LLKA 85
|
90 100
....*....|....*....|....*....
gi 26325882 263 GNTDRAADRVRNLIKAletgEPHNPNLHL 291
Cdd:COG4783 86 GDYDEALALLEKALKL----DPEHPEAYL 110
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
614-761 |
1.70e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 42.67 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 614 ERASILLELVEALRLNGELHEATKIMQDAINEFSGTPEemriTVANVDLALSK-GNVDLALNMLRGITPKQPCYTEAKEK 692
Cdd:COG3914 76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLAlGRLEEALAALRRALALNPDFAEAYLN 151
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 693 MASIYLHTRkDVRLYIGCYVELCEHLPG-PHSSLLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRI 761
Cdd:COG3914 152 LGEALRRLG-RLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
721-783 |
1.99e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.99e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26325882 721 PHSSLLLGDAFMNIQEPEKALEVYDEAYRKNPH-----DASLvsRIGQAYVKTHQYAKAINYYEAAQK 783
Cdd:COG1729 30 PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkapDALL--KLGLSYLELGDYDKARATLEELIK 95
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
952-1013 |
2.79e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 2.79e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 26325882 952 RAAVMLADLMFRRQNYETAINLYHQVLEKAPDNFLV---LNKLVDLLRRSGKLEEAPAFFELAKK 1013
Cdd:COG1729 31 DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARATLEELIK 95
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
956-1019 |
2.99e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.70 E-value: 2.99e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 26325882 956 MLADLMFRRQNYETAINLYHQVLEK---APDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSSRVP 1019
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
508-785 |
3.90e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 508 GELENAQSTLQRCLELDPTFVDA-HLLMSQIYLAQGNFAMCSHCLE---LGVSHNFQVRDhplyhfIKARALNKTGDYAE 583
Cdd:COG3071 64 GDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEalrAGAPRHPQVLR------LLLQAYRQLGDWEE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 584 AIKTLkmiikvptskaEEGRKSQSPSvrPSERASILLELVEALrlngeLHEATKIMQDAINEFSGTPEEMR----ITVAN 659
Cdd:COG3071 138 LLELL-----------PALRKHKALS--AEEAQALERRAYLGL-----LRQAARDAEALKALWKALPRAERrdpeLAAAY 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 660 VDLALSKGNVDLALNMLRGITPKQPcyteakekmasiylhtrkDVRLyIGCYVELcehlpgphsslllgdafmNIQEPEK 739
Cdd:COG3071 200 ARALIALGDHDEAERLLREALKRQW------------------DPRL-VRLYGRL------------------QGGDPAK 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 26325882 740 ALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKIS 785
Cdd:COG3071 243 QLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALR 288
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
878-983 |
3.99e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.43 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 878 QNQLAASICIQIGEHHLAEKDYDSALKSYKDALAYSPTDSKVvlelahlylllgqldlceqrcapllemeqthERAAVML 957
Cdd:COG1729 25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA-------------------------------PDALLKL 73
|
90 100
....*....|....*....|....*.
gi 26325882 958 ADLMFRRQNYETAINLYHQVLEKAPD 983
Cdd:COG1729 74 GLSYLELGDYDKARATLEELIKKYPD 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
727-785 |
4.29e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 4.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 26325882 727 LGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKIS 785
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-286 |
4.70e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.38 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 112 ALYYASLFLWFMGHHDKAREYVDHMLKVSSGSKEGYVLKGWVDLTSSKPhvvKKSIKYLEQGTQ-DTKDVLGLMGKATYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 191 MTQQNFSGALEVANQVTMACSNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVHeLVKEGNTDRAAD 270
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA-LEKLGRYEEALE 165
|
170
....*....|....*.
gi 26325882 271 RVRNLIKALETGEPHN 286
Cdd:COG0457 166 LLEKLEAAALAALLAA 181
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
490-588 |
5.01e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 490 APAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNF----AMCSHCLELGvshnfqvRDHP 565
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYdaalEDFDRALELD-------PDYA 141
|
90 100
....*....|....*....|...
gi 26325882 566 LYHFIKARALNKTGDYAEAIKTL 588
Cdd:COG4785 142 YAYLNRGIALYYLGRYELAIADL 164
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
324-426 |
6.48e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 38.63 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 324 SCALVATELGYLFILHQQVKEACLWYKEAMKLEENRLAALAGSIWCQILQGQLEEAahqLEFLKEVQQSLGKSELLVFLQ 403
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEA---IVLLHEALELDPDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 26325882 404 ALVAAKKQRLEqEATALLKEAVE 426
Cdd:COG4783 79 GLALLKAGDYD-EALALLEKALK 100
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
893-1017 |
7.09e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 893 HLAEKDYDSALKSYKDALAYSPTDSkvvlelahlylllgqldlceqrcapllemeqtheRAAVMLADLMFRRQNYETAIN 972
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNA----------------------------------DALNNLGLLLLEQGRYDEAIA 47
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 26325882 973 lYHQVLEKAPDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSSR 1017
Cdd:COG3063 48 -LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
508-593 |
7.56e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.87 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 508 GELENAQSTLQRCLELDPTFvDAHLL--MSQIYLAQGNFAMCSHCLELGVSHNFQVRdHPLYHFIKARALNKTGDYAEAI 585
Cdd:COG4700 103 GRYDEAIELYEEALTGIFAD-DPHILlgLAQALFELGRYAEALETLEKLIAKNPDFK-SSDAHLLYARALEALGDLEAAE 180
|
....*...
gi 26325882 586 KTLKMIIK 593
Cdd:COG4700 181 AELEALAR 188
|
|
| PRK10370 |
PRK10370 |
formate-dependent nitrite reductase complex subunit NrfG; Provisional |
730-788 |
9.01e-03 |
|
formate-dependent nitrite reductase complex subunit NrfG; Provisional
Pssm-ID: 182415 [Multi-domain] Cd Length: 198 Bit Score: 39.11 E-value: 9.01e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 26325882 730 AFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQD 788
Cdd:PRK10370 48 QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN 106
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1204-1296 |
9.14e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26325882 1204 IYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYkDAATNYELAWKYSHQaNPAIGFKLAFNYLKDKKFVDA 1283
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKLDPN-NAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 26325882 1284 IEVCHSVLTEHPK 1296
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| |
