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Conserved domains on  [gi|26375401|dbj|BAB27926|]
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unnamed protein product [Mus musculus]

Protein Classification

SNUT3/LISCH7 family protein( domain architecture ID 12095402)

SNUT3/LISCH7 family protein is a DUF1777 domain-containing protein; similar to Homo sapiens U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein (SNRNP27) that may play a role in mRNA splicing and Mus musculus lipolysis-stimulated lipoprotein receptor (LISCH7) that plays a role in the clearance of triglyceride-rich lipoprotein from blood

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SNRNP27 pfam08648
U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including ...
 98-154 1.05e-29

U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein may play a role in mRNA splicing.


:

Pssm-ID: 462548  Cd Length: 56  Bit Score: 102.60  E-value: 1.05e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 26375401    98 EEEIEMMKLMGFASFDSTKGKKVDGSvNAYAINVSQKRKYRQYMNRKGGFNRPLDFI 154
Cdd:pfam08648   1 DEEEEMMKMMGFGGFDTTKGKKVEGN-DVGGVKKKKKRKYRQYMNRRGGFNRPLDPI 56
 
Name Accession Description Interval E-value
SNRNP27 pfam08648
U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including ...
 98-154 1.05e-29

U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein may play a role in mRNA splicing.


Pssm-ID: 462548  Cd Length: 56  Bit Score: 102.60  E-value: 1.05e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 26375401    98 EEEIEMMKLMGFASFDSTKGKKVDGSvNAYAINVSQKRKYRQYMNRKGGFNRPLDFI 154
Cdd:pfam08648   1 DEEEEMMKMMGFGGFDTTKGKKVEGN-DVGGVKKKKKRKYRQYMNRRGGFNRPLDPI 56
 
Name Accession Description Interval E-value
SNRNP27 pfam08648
U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including ...
 98-154 1.05e-29

U4/U6.U5 small nuclear ribonucleoproteins; This is a family of eukaryotic proteins including U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein may play a role in mRNA splicing.


Pssm-ID: 462548  Cd Length: 56  Bit Score: 102.60  E-value: 1.05e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 26375401    98 EEEIEMMKLMGFASFDSTKGKKVDGSvNAYAINVSQKRKYRQYMNRKGGFNRPLDFI 154
Cdd:pfam08648   1 DEEEEMMKMMGFGGFDTTKGKKVEGN-DVGGVKKKKKRKYRQYMNRRGGFNRPLDPI 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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