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Conserved domains on  [gi|687814724|gb|AIQ81019|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Scirtothrips dorsalis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 10-164 1.78e-15

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 69.45  E-value: 1.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 687814724  10 KSITIMAMFFSYLFIMFSNHPLIMGIVVIFQSAILSFVMAIKFKFSWFSFMIFMIYLGGILMLFSYIISITYSEEKILKK 89
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 687814724  90 SKKMWIFTLFFFIFIPFLMQKKEENFSISMKSNMEF--LLNSPFSSSWKISMFMILFLLLIMIFVVFMTETKKSSMK 164
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSfsLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 10-164 1.78e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 69.45  E-value: 1.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 687814724  10 KSITIMAMFFSYLFIMFSNHPLIMGIVVIFQSAILSFVMAIKFKFSWFSFMIFMIYLGGILMLFSYIISITYSEEKILKK 89
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 687814724  90 SKKMWIFTLFFFIFIPFLMQKKEENFSISMKSNMEF--LLNSPFSSSWKISMFMILFLLLIMIFVVFMTETKKSSMK 164
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSfsLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 10-164 1.78e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 69.45  E-value: 1.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 687814724  10 KSITIMAMFFSYLFIMFSNHPLIMGIVVIFQSAILSFVMAIKFKFSWFSFMIFMIYLGGILMLFSYIISITYSEEKILKK 89
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 687814724  90 SKKMWIFTLFFFIFIPFLMQKKEENFSISMKSNMEF--LLNSPFSSSWKISMFMILFLLLIMIFVVFMTETKKSSMK 164
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSfsLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 9-165 8.69e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 46.15  E-value: 8.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 687814724   9 MKSITIMAMFFSYLFIM-FSNHPLIMGIVVIFQSAILSFVMAiKFKFSWFSFMIFMIYLGGILMLFSYIISITYSEEKIL 87
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFpLSAHPLTLGVSLLLSSLLSCLIIT-MESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 687814724  88 KKSKKMWIFTLFFFIFIPFLMQKKEENFSISMKSNMEFLLNSPFSS-SWKISMFMILFLLLIMIFVVFMTETKKSSMKP 165
Cdd:MTH00212  80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNnNIPILLFLGLILLIALLMVVKICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 18-164 4.39e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 41.41  E-value: 4.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 687814724  18 FFSYLFIMFSNHPLIMGIVVIFQSAILSFVMAIkFKFSWFSFMIFMIYLGGILMLFSYIISITYSEEKILKKSKKMWIFT 97
Cdd:MTH00152  11 FSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGL-TLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKFVFFSLT 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 687814724  98 LFFFIFIPFLMQKKEENFSISMKSNMEFLLNSPF-------SSSWKISMFMILFLLLIMIFVVFMTETKKSSMK 164
Cdd:MTH00152  90 LFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSfggglysSSGWSIFVFLAVLLLIVMVSVVKICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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