|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
306-539 |
5.82e-45 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 158.63 E-value: 5.82e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 306 IQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYK 385
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 386 NRGIARYLL----SSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDF 461
Cdd:COG0457 81 NLGLALQALgryeEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 186464690 462 ERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRKEGKLEALKDTQERILDLEIEESLDILKF 539
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
248-512 |
4.10e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 140.14 E-value: 4.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 248 YAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLG 327
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 328 RLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYllssqpgfpqaikin 407
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE--------------- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 408 pkdaiaykkrgnarsDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGN 487
Cdd:COG0457 156 ---------------KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
250 260
....*....|....*....|....*
gi 186464690 488 IRLEIADKQGAIEDFHKAADIYRKE 512
Cdd:COG0457 221 ELLLLALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
282-529 |
4.54e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 127.15 E-value: 4.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 282 YYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIG 361
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 362 DNQGAIEDYTQAIKINPHYADAYKNRGIArYLLSSQpgFPQAI-------KINPKDAIAYKKRGNARSDLGDFEGAIEDY 434
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEI-YEQEGD--WEKAIevlerllKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 435 TQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRKEGK 514
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
250
....*....|....*
gi 186464690 515 LEALKDTQERILDLE 529
Cdd:COG2956 248 LLALADLLERKEGLE 262
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
247-476 |
2.59e-31 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 120.79 E-value: 2.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 247 LYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADY------SQAIQMNIQDAKSYNKRG 320
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAalaaerIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYllssqpgf 400
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY-------- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 186464690 401 pqaikinpkdaiaykkrgnarsDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLgDFERAIEDYTQAIQINY 476
Cdd:COG4785 153 ----------------------YLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDWATAY 205
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
308-505 |
1.82e-30 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 118.48 E-value: 1.82e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 308 MNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIkINPHYADAYKNR 387
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 388 GIARYLL----SSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFER 463
Cdd:COG4785 80 GVAYDSLgdydLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 186464690 464 AIEDYTQAIQINYNYADAYYNRGNIRLEIaDKQGAIEDFHKA 505
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLED 200
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
280-512 |
9.40e-30 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 123.56 E-value: 9.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 280 NLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSH 359
Cdd:COG3914 45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 360 IGDNQGAIEDYTQAIKINPHYADAYKNRGiaryllssqpgfpqaikinpkdaiaykkrgNARSDLGDFEGAIEDYTQAIQ 439
Cdd:COG3914 125 LGRLEEALAALRRALALNPDFAEAYLNLG------------------------------EALRRLGRLEEAIAALRRALE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186464690 440 INPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRKE 512
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
241-454 |
1.82e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.56 E-value: 1.82e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG0457 38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYLLssqpgf 400
Cdd:COG0457 118 LALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA------ 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 186464690 401 pQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNA 454
Cdd:COG0457 192 -AAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
347-508 |
2.11e-28 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 112.70 E-value: 2.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 347 AVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYLLSsQPGFPQAIkINPKDAIAYKKRGNARSDLGD 426
Cdd:COG4785 11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALA-AERIDRAL-ALPDLAQLYYERGVAYDSLGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 427 FEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAA 506
Cdd:COG4785 89 YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
|
..
gi 186464690 507 DI 508
Cdd:COG4785 169 EL 170
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
241-512 |
4.88e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 113.29 E-value: 4.88e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG2956 38 DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNrgiaryllssqpgf 400
Cdd:COG2956 118 EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL-------------- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 401 pqaikinpkdaiaykkRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYAD 480
Cdd:COG2956 184 ----------------LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
250 260 270
....*....|....*....|....*....|..
gi 186464690 481 AyynrgnirLEIADKQGAIEDFHKAADIYRKE 512
Cdd:COG2956 248 L--------LALADLLERKEGLEAALALLERQ 271
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
281-439 |
8.31e-27 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 108.08 E-value: 8.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 281 LYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHI 360
Cdd:COG4785 75 LYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 361 GDNQGAIEDYTQAIKINPHYADAYKNRGIARYllssqpgfpqaiKINPKDAIAYKKR--GNARSDLGDFEGAIEDYTQAI 438
Cdd:COG4785 155 GRYELAIADLEKALELDPNDPERALWLYLAER------------KLDPEKALALLLEdwATAYLLQGDTEEARELFKLAL 222
|
.
gi 186464690 439 Q 439
Cdd:COG4785 223 A 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
271-484 |
1.28e-25 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 111.24 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 271 ALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAY 350
Cdd:COG3914 70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 351 KNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNrgiaryllssqpgfpqaikinpkdaiaykkRGNARSDLGDFEGA 430
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN------------------------------LGNALQDLGRLEEA 199
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 431 IEDYTQAIQINPNYADAYYN------RDNAHSDLGDFERAIEDYTQAIQINYNYADAYYN 484
Cdd:COG3914 200 IAAYRRALELDPDNADAHSNllfalrQACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
238-384 |
1.08e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 105.08 E-value: 1.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 238 EYNNEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYN 317
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 318 KRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAY 384
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
276-444 |
2.92e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.17 E-value: 2.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 276 SSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAE 355
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 356 ARSHIGDNQGAIEDYTQAIKINPHYADAYKNrgiaryllssqpgfpqaikinpkdaiaykkRGNARSDLGDFEGAIEDYT 435
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLR------------------------------LARAYRALGRPDEAIAALE 130
|
....*....
gi 186464690 436 QAIQINPNY 444
Cdd:COG4783 131 KALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
235-379 |
3.55e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.20 E-value: 3.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 235 FQPEYNNEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAK 314
Cdd:COG4785 63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186464690 315 SYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIgDNQGAIEDYTQAIKINPH 379
Cdd:COG4785 143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDWATAYL 206
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
248-380 |
3.73e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.78 E-value: 3.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 248 YAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLG 327
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 186464690 328 RLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHY 380
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
381-509 |
1.10e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.24 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 381 ADAYKNRGIARYLL----SSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHS 456
Cdd:COG4783 4 AEALYALAQALLLAgdydEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 186464690 457 DLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIY 509
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
402-508 |
4.25e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.52 E-value: 4.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 402 QAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADA 481
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100
....*....|....*....|....*..
gi 186464690 482 YYNRGNIRLEIADKQGAIEDFHKAADI 508
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
242-508 |
8.51e-19 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 89.66 E-value: 8.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 242 EDSNTLYA----KLGDEYFEKGEYTNAIVNYGKALkVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYN 317
Cdd:TIGR00990 120 EEERKKYAaklkEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 318 KRGLALSQLGRLEEAINDYTQAI--------RINPNVAVAYKNRAE--ARSHIGDNQG------AIEDYTQAIKINPHYA 381
Cdd:TIGR00990 199 RRANAYDGLGKYADALLDLTASCiidgfrneQSAQAVERLLKKFAEskAKEILETKPEnlpsvtFVGNYLQSFRPKPRPA 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 382 DAYKNRGIARYLLSSQ-------------PGFPQAI----------KINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAI 438
Cdd:TIGR00990 279 GLEDSNELDEETGNGQlqlglkspeskadESYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 439 QINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADI 508
Cdd:TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
297-448 |
5.43e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.44 E-value: 5.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 297 AAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKI 376
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 377 NPHYADAYKNRGIARYllssqpgfpqaikinpkdaiaykkrgnarsDLGDFEGAIEDYTQAIQINPNYADAY 448
Cdd:COG4235 81 DPDNPEALYLLGLAAF------------------------------QQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
264-391 |
9.60e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.58 E-value: 9.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 264 AIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRIN 343
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 186464690 344 PNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYK-NRGIAR 391
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLlEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
241-391 |
1.15e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 83.12 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGA--IEDYTQAIKINP--------HY---ADAYKNR 387
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYdrFEELLAALARGPselspfalLYlpdDDPAELL 267
|
....
gi 186464690 388 GIAR 391
Cdd:COG3914 268 ALAR 271
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
289-378 |
1.42e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.21 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 289 HYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAInDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIE 368
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 186464690 369 DYTQAIKINP 378
Cdd:COG3063 81 YLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
229-525 |
1.76e-16 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 82.72 E-value: 1.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 229 QLLKSFFQPEyNNEDSNTLYAKLGDEYFEKGE----------YTNAIVNYGKAL---KVTSSDINLYYKRGLTHYQIGDY 295
Cdd:TIGR00990 269 QSFRPKPRPA-GLEDSNELDEETGNGQLQLGLkspeskadesYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKH 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 296 EAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIK 375
Cdd:TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 376 INPHYADAYKNRGIARYLL----SSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNR 451
Cdd:TIGR00990 428 LDPDFIFSHIQLGVTQYKEgsiaSSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 452 DNAHSDLGDFERAIEDYTQAIQ-------INYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRKEGKL-------EA 517
Cdd:TIGR00990 508 LPLINKALALFQWKQDFIEAENlcekaliIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELvqaisyaEA 587
|
....*...
gi 186464690 518 LKdTQERI 525
Cdd:TIGR00990 588 TR-TQIQV 594
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
281-378 |
3.14e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 76.15 E-value: 3.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 281 LYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHI 360
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
90
....*....|....*...
gi 186464690 361 GDNQGAIEDYTQAIKINP 378
Cdd:COG5010 136 GQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
242-506 |
6.44e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 6.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 242 EDSNTLYAKlGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQD-------AK 314
Cdd:TIGR02917 20 QSPEELIEA-AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKnqvlpllAR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 315 SYNKRGlALSQLgrLEEAINDYTQAiriNPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAykNRGIARYLL 394
Cdd:TIGR02917 99 AYLLQG-KFQQV--LDELPGKTLLD---DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 395 S------SQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDY 468
Cdd:TIGR02917 171 AenrfdeARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
|
250 260 270
....*....|....*....|....*....|....*...
gi 186464690 469 TQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAA 506
Cdd:TIGR02917 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
420-511 |
8.44e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 72.90 E-value: 8.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 420 ARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEdYTQAIQINYNYADAYYNRGNIRLEIADKQGAI 499
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 186464690 500 EDFHKAADIYRK 511
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
380-508 |
1.18e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 74.61 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 380 YADAYKNRGIARYLLSSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLG 459
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 186464690 460 DFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADI 508
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
241-345 |
1.59e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.69 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG4783 34 DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA 113
|
90 100
....*....|....*....|....*
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPN 345
Cdd:COG4783 114 RAYRALGRPDEAIAALEKALELDPD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
228-526 |
2.00e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.74 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 228 NQLLKSFFQPEY-NNEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSdiNLYYKRGLTHYQI--GDYEAAIADYSQ 304
Cdd:TIGR02917 107 QQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALIDE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 305 AIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRA----------EARSHI-------------- 360
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAtilieagefeEAEKHAdallkkapnsplah 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 361 ----------GDNQGAIEDYTQAIKINPHYADAYKNRGIARY--------------LLSSQPGFPQAIKI---------N 407
Cdd:TIGR02917 265 ylkalvdfqkKNYEDARETLQDALKSAPEYLPALLLAGASEYqlgnleqayqylnqILKYAPNSHQARRLlasiqlrlgR 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 408 PKDAIAYKKRGNARSD---------------LGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAI 472
Cdd:TIGR02917 345 VDEAIATLSPALGLDPddpaalsllgeaylaLGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 473 QINYNYADA----------------------------------YYNRGNIRLEIADKQGAIEDFHKA------------- 505
Cdd:TIGR02917 425 QLDPELGRAdlllilsylrsgqfdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKAlsiepdffpaaan 504
|
410 420
....*....|....*....|..
gi 186464690 506 -ADIYRKEGKLEALKDTQERIL 526
Cdd:TIGR02917 505 lARIDIQEGNPDDAIQRFEKVL 526
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
331-488 |
4.42e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.96 E-value: 4.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 331 EAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYLLssqpgfpqaikinpkd 410
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA---------------- 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 186464690 411 aiaykkrgnarsdlGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNI 488
Cdd:COG4235 65 --------------GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
204-507 |
1.24e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.05 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 204 NSSRQQPSIYKYFPKQEILSKPTNNQLL-----------------KSFFQPEYNNEDSntLYAKLGDEYF--EKGEYTNA 264
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLalrglaylglgqlelaqKSYEQALAIDPRS--LYAKLGLAQLalAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 265 IVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINP 344
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 345 NVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYLLSSQPG----FPQAIKINPKDAIAYKKRGNA 420
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQayqyLNQILKYAPNSHQARRLLASI 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 421 RSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIE 500
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
....*..
gi 186464690 501 DFHKAAD 507
Cdd:TIGR02917 419 DLETAAQ 425
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
241-345 |
2.87e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 2.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG 92
|
90 100
....*....|....*....|....*
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPN 345
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
248-386 |
3.69e-14 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 71.98 E-value: 3.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 248 YAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLG 327
Cdd:TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186464690 328 RLEEAINDYTQAIRIN--PNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKN 386
Cdd:TIGR02521 114 KYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
271-394 |
6.70e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.22 E-value: 6.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 271 ALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAY 350
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 186464690 351 KNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIARYLL 394
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
240-523 |
1.85e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 240 NNEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQ-------- 311
Cdd:TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPElgradlll 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 312 --------------------------DAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQG 365
Cdd:TIGR02917 438 ilsylrsgqfdkalaaakklekkqpdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 366 AIEDYTQAIKINPH-------YADAYKNRG--------------------------IARYLLSSQPGFPQAI-----KIN 407
Cdd:TIGR02917 518 AIQRFEKVLTIDPKnlrailaLAGLYLRTGneeeavawlekaaelnpqeiepalalAQYYLGKGQLKKALAIlneaaDAA 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 408 PKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAyyNRGN 487
Cdd:TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA--QIGL 675
|
330 340 350
....*....|....*....|....*....|....*.
gi 186464690 488 IRLEIADKQgaIEDFHKAADIYRKEGKLEALKDTQE 523
Cdd:TIGR02917 676 AQLLLAAKR--TESAKKIAKSLQKQHPKAALGFELE 709
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
255-344 |
5.58e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 5.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 255 YFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAIN 334
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 186464690 335 DYTQAIRINP 344
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
251-481 |
1.05e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.88 E-value: 1.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 251 LGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLE 330
Cdd:TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 331 EAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAY--------------KNRGIARYLLSS 396
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllilsylrsgqfdKALAAAKKLEKK 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 397 QPGFPQAikINPKDAIAYKKrgnarsdlGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINY 476
Cdd:TIGR02917 461 QPDNASL--HNLLGAIYLGK--------GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530
|
....*
gi 186464690 477 NYADA 481
Cdd:TIGR02917 531 KNLRA 535
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
410-532 |
1.18e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.21 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 410 DAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIR 489
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 490 LEIADKQGAIEDFHKA--------------ADIYRKEGKLEALKDTQERILDLEIEE 532
Cdd:COG4783 83 LKAGDYDEALALLEKAlkldpehpeaylrlARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
255-345 |
1.60e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.65 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 255 YFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIAdYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAIN 334
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 186464690 335 DYTQAIRINPN 345
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
294-475 |
1.81e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.37 E-value: 1.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 294 DYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQA 373
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 374 IKINPHYADAYKNRGIARYLLssqpgfpqaikinpkdaiaykkrgnarsdlGDFEGAIEDYTQAIQINPNYADAYYNRDN 453
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRS------------------------------GDKDEAKEYYEKALALSPDNPNAYSNLAA 130
|
170 180
....*....|....*....|..
gi 186464690 454 AHSDLGDFERAIEDYTQAIQIN 475
Cdd:COG5010 131 LLLSLGQDDEAKAALQRALGTS 152
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
426-525 |
3.12e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 67.89 E-value: 3.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 426 DFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGN--IRLEiaDKQGAIEDFH 503
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTacMKLE--EYQTAKAALE 94
|
90 100
....*....|....*....|...
gi 186464690 504 KAADIYRKEGKLEAL-KDTQERI 525
Cdd:PLN03088 95 KGASLAPGDSRFTKLiKECDEKI 117
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
322-443 |
3.92e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 3.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 322 ALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEdYTQAIKINPHYADAYKNRGIARYllssqpgfp 401
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL--------- 70
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 186464690 402 qaikinpkdaiaykkrgnarsDLGDFEGAIEDYTQAIQINPN 443
Cdd:COG3063 71 ---------------------ELGDYDEALAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
430-528 |
5.74e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 5.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 430 AIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKA---- 505
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAlald 81
|
90 100 110
....*....|....*....|....*....|...
gi 186464690 506 ----------ADIYRKEGKLEALKDTQERILDL 528
Cdd:COG4235 82 pdnpealyllGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
402-529 |
2.49e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 2.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 402 QAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADA 481
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 482 YYNRGNIRLEIADKQGAIEDFHKA--------------ADIYRKEGKLEALKDTQERILDLE 529
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKAlalspdnpnaysnlAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
252-293 |
5.19e-09 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 51.70 E-value: 5.19e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 186464690 252 GDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIG 293
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
250-511 |
7.97e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.56 E-value: 7.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 250 KLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYkrGLTHYQIGDYEAAIAdysQAIQMNIQDAKSYNKR-----GLALS 324
Cdd:TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL--ALAQYYLGKGQLKKA---LAILNEAADAAPDSPEawlmlGRAQL 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 325 QLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAykNRGIARYLLSSQPgFPQAI 404
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA--QIGLAQLLLAAKR-TESAK 689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 405 KI-------NPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNyADAYYNRDNAHSDLGDFERAIEDYTQAIQINYN 477
Cdd:TIGR02917 690 KIakslqkqHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768
|
250 260 270
....*....|....*....|....*....|....
gi 186464690 478 YADAYYNRGNIRLEIADKQGAIEDFHKAADIYRK 511
Cdd:TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
418-459 |
9.24e-09 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 51.32 E-value: 9.24e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 186464690 418 GNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLG 459
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
253-358 |
2.72e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 253 DEYFEKGEYTNAIVNYGKALKVTSSDI---NLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAK---SYNKRGLALSQL 326
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|..
gi 186464690 327 GRLEEAINDYTQAIRINPNVAVAYKNRAEARS 358
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
425-509 |
3.60e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 425 GDFEGAIEDYTQAIQINPN---YADAYYNRDNAHSDLGDFERAIEDYTQAIQI---NYNYADAYYNRGNIRLEIADKQGA 498
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|.
gi 186464690 499 IEDFHKAADIY 509
Cdd:COG1729 87 RATLEELIKKY 97
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
330-390 |
5.34e-08 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 54.79 E-value: 5.34e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186464690 330 EEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADAYKNRGIA 390
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
311-508 |
1.25e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 311 QDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINphYADAYKNRGIA 390
Cdd:TIGR02917 20 QSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 391 RyLLSSQPGFPQAIKINPKD--------AIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYAD-----AYYnrdnAHSD 457
Cdd:TIGR02917 98 R-AYLLQGKFQQVLDELPGKtllddegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYaklglAQL----ALAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 186464690 458 lGDFERAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADI 508
Cdd:TIGR02917 173 -NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
402-475 |
2.01e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 402 QAIKINPKDAIAYKKRGNARSDLGDFEGAIEdYTQAIQINPNYADA-------YYNRdnahsdlGDFERAIEDYTQAIQI 474
Cdd:COG3063 17 KALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAllnlaelLLEL-------GDYDEALAYLERALEL 88
|
.
gi 186464690 475 N 475
Cdd:COG3063 89 D 89
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
257-507 |
8.70e-07 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 52.01 E-value: 8.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 257 EKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMniqDAKSYNkRG------------LALS 324
Cdd:PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL---DPHSSN-RDkwesllkvnrywLLIQ 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 325 Q------LGRLEEAINDYTQAIRINPN----------VAVAYKNRAEARSHigdnqgaiedYTQAIKINPHYADAYknRG 388
Cdd:PRK11447 357 QgdaalkANNLAQAERLYQQARQVDNTdsyavlglgdVAMARKDYAAAERY----------YQQALRMDPGNTNAV--RG 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 389 IARyLLSSQpgfpqaikiNPKDAIAYKKRGNA--RSDLGDFEGAIEDYTQAIQinpnyADAYYNRdnahsdlGDFERAIE 466
Cdd:PRK11447 425 LAN-LYRQQ---------SPEKALAFIASLSAsqRRSIDDIERSLQNDRLAQQ-----AEALENQ-------GKWAQAAE 482
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 186464690 467 DYTQAIQ-------INYNYADAYYNRGniRLEIADKQGAIEDFHKAAD 507
Cdd:PRK11447 483 LQRQRLAldpgsvwLTYRLAQDLRQAG--QRSQADALMRRLAQQKPND 528
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
242-359 |
8.78e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.27 E-value: 8.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 242 EDSNTLYAK--LGDEYFEKGEYTNAIVNYGKALK-VTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNiqdaKSYNK 318
Cdd:COG4700 84 EFADTVQNRvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKN----PDFKS 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 186464690 319 ------RGLALSQLGRLEEAINDYTQAIRINPNVAVAY---------KNRAEARSH 359
Cdd:COG4700 160 sdahllYARALEALGDLEAAEAELEALARRYSGPEARYryakflarqGRTAEAKEL 215
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
409-515 |
9.69e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 48.90 E-value: 9.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 409 KDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYAD---AYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNR 485
Cdd:PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
|
90 100 110
....*....|....*....|....*....|....*..
gi 186464690 486 GNI---RLEIADKQGAIED----FHKAADIYRKEGKL 515
Cdd:PRK02603 113 AVIyhkRGEKAEEAGDQDEaealFDKAAEYWKQAIRL 149
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
313-345 |
1.35e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 1.35e-06
10 20 30
....*....|....*....|....*....|...
gi 186464690 313 AKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
411-444 |
1.44e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 1.44e-06
10 20 30
....*....|....*....|....*....|....
gi 186464690 411 AIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNY 444
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
259-345 |
1.65e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 48.51 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 259 GEYTNAIVNYGKALKVTSSDIN---LYYKRGLTHYQIGDYEAAIADYSQAIQMNIQD-------AKSYNKRGLALSQLGR 328
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQpsalnniAVIYHKRGEKAEEAGD 128
|
90 100
....*....|....*....|....
gi 186464690 329 LEEAIN------DY-TQAIRINPN 345
Cdd:PRK02603 129 QDEAEAlfdkaaEYwKQAIRLAPN 152
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
283-345 |
2.42e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 45.02 E-value: 2.42e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 186464690 283 YKRGLTHYQIGDYEAAIADYSQAIQMNI---QDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
268-382 |
3.68e-06 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 46.52 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 268 YGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVA 347
Cdd:TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85
|
90 100 110
....*....|....*....|....*....|....*...
gi 186464690 348 VAYKNRAEARSHIGDNQGAIEDYTQAIKI---NPHYAD 382
Cdd:TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEIcgeNPEYSE 123
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
228-488 |
4.16e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 228 NQLLKSFFQPEYNNEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVtssdinlyyKRGLTHYQIG--DYEAAIADYSQA 305
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---------KPDNTEAQIGlaQLLLAAKRTESA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 306 IQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIrinPNVAVAYK---------NRAEARSHIGDNQGAIEDYTQAIKI 376
Cdd:TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI---QAYRKALKrapssqnaiKLHRALLASGNTAEAVKTLEAWLKT 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 377 NP-------HYADAYKNRGiaRYLLSSQPgFPQAIKINPKDAIA-------YKKRGNARSdLGDFEGAIEDYTQAIQINP 442
Cdd:TIGR02917 766 HPndavlrtALAELYLAQK--DYDKAIKH-YQTVVKKAPDNAVVlnnlawlYLELKDPRA-LEYAERALKLAPNIPAILD 841
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 186464690 443 NYADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNI 488
Cdd:TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
286-327 |
6.14e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 43.23 E-value: 6.14e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 186464690 286 GLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLG 327
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
402-464 |
6.47e-06 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 48.24 E-value: 6.47e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186464690 402 QAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERA 464
Cdd:PLN03088 27 QAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
313-345 |
7.18e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.82 E-value: 7.18e-06
10 20 30
....*....|....*....|....*....|...
gi 186464690 313 AKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
445-475 |
7.53e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.79 E-value: 7.53e-06
10 20 30
....*....|....*....|....*....|.
gi 186464690 445 ADAYYNRDNAHSDLGDFERAIEDYTQAIQIN 475
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
453-488 |
7.84e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.84 E-value: 7.84e-06
10 20 30
....*....|....*....|....*....|....*.
gi 186464690 453 NAHSDLGDFERAIEDYTQAIQINYNYADAYYNRGNI 488
Cdd:pfam13414 2 DAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLA 37
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
279-342 |
9.20e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 9.20e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 279 INLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQ--------DAKSYNKRGLALSQLGRLEEAINDYTQAIRI 342
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhplTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
325-532 |
1.05e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.62 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 325 QLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPhyadaykNRGIARYL----LSSqpgf 400
Cdd:cd24142 12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-------DGGYEKYLylgqLSG---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 401 pqaikinPKDAIAYKKRG-----NARSDLGDFEGAIEDYTQAIQinPNYADAY------YnrdnaHSDLGDF---ERAIE 466
Cdd:cd24142 81 -------GEEALQYYEKGieileEELQALQAASAEAEEEAEELK--RKLSSALcalaeiY-----MTDLCDEpdaEQRCE 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 467 DY-TQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRKEGKLEALKDTQERILDLEIEE 532
Cdd:cd24142 147 ELiTKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELWKDLKEEDEEEAEEDEAEEEDVPS 213
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
233-494 |
1.16e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 46.80 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 233 SFFQPEYNNEDSNTLYAKlGDEYFEKGEYTNAIVNYGKAlkvtssdINLY----------YKRGLTHYQIGDYEAAIADY 302
Cdd:COG4105 21 SSFKKALKSWDAEELYEE-AKEALEKGDYEKAIKLFEEL-------EPRYpgspyaeqaqLMLAYAYYKQGDYEEAIAAA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 303 SQAIQM-----NIQDAksYNKRGLALSQLGR--------LEEAINDYTQAIRINPN---VAVAYKNRAEARSHIgdnqga 366
Cdd:COG4105 93 DRFIKLypnspNADYA--YYLRGLSYYEQSPdsdrdqtsTRKAIEAFQELINRYPDseyAEDAKKRIDELRDKL------ 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 367 iedytqaikinphyadAYKNRGIARYllssqpgfpqaikinpkdaiaYKKRGNARSDLGDFEGAIEDYTQAiqinPNYAD 446
Cdd:COG4105 165 ----------------ARKELEVARY---------------------YLKRGAYVAAINRFQNVLEDYPDT----PAVEE 203
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 186464690 447 AYYNRDNAHSDLGDFERAIeDYTQAIQINY----NYADAYYNRGNIRLEIAD 494
Cdd:COG4105 204 ALYLLVEAYYALGRYDEAQ-DAAAVLGKNYpdspYLKDAEKLLKKIGKELKK 254
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
411-444 |
1.27e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 1.27e-05
10 20 30
....*....|....*....|....*....|....
gi 186464690 411 AIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNY 444
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
313-376 |
1.40e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.40e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 313 AKSYNKRGLALSQLGRLEEAINDYTQAIRI--------NPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKI 376
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
400-473 |
2.57e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 400 FPQAIKINPKDAI---AYKKRGNARSDLGDFEGAIEDYTQAIQINPN---YADAYYNRDNAHSDLGDFERAIEDYTQAIQ 473
Cdd:COG1729 16 FKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
294-356 |
2.87e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 46.32 E-value: 2.87e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186464690 294 DYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEA 356
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
313-345 |
5.05e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.20 E-value: 5.05e-05
10 20 30
....*....|....*....|....*....|...
gi 186464690 313 AKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
313-345 |
9.00e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.69 E-value: 9.00e-05
10 20 30
....*....|....*....|....*....|...
gi 186464690 313 AKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
241-313 |
9.30e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 9.30e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDA 313
Cdd:COG4235 47 DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
247-376 |
1.22e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 45.23 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 247 LYAKLGDEYFEKGEYTNAIVNYGKALKVTSSD------INLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRG 320
Cdd:COG3899 707 LLLRAARRALARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHG 786
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186464690 321 -----------LALSQLGRLEEAINDYTQAIRI------NPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKI 376
Cdd:COG3899 787 nppasarayanLGLLLLGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
445-478 |
1.31e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.31e-04
10 20 30
....*....|....*....|....*....|....
gi 186464690 445 ADAYYNRDNAHSDLGDFERAIEDYTQAIQINYNY 478
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
320-356 |
1.42e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 1.42e-04
10 20 30
....*....|....*....|....*....|....*..
gi 186464690 320 GLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEA 356
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLA 37
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
251-307 |
1.69e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.13 E-value: 1.69e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 251 LGDEYFEKGEYTNAIVNYGKALKVTSSDI---NLYYKRGLTHYQIGDYEAAIADYSQAIQ 307
Cdd:COG1729 36 LGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
411-474 |
1.74e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 1.74e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 411 AIAYKKRGNARSDLGDFEGAIEDYTQAIQI--------NPNYADAYYNRDNAHSDLGDFERAIEDYTQAIQI 474
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
361-394 |
2.22e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 2.22e-04
10 20 30
....*....|....*....|....*....|....
gi 186464690 361 GDNQGAIEDYTQAIKINPHYADAYKNRGIARYLL 394
Cdd:pfam13414 8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
249-332 |
2.30e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 43.62 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 249 AKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGR 328
Cdd:PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85
|
....
gi 186464690 329 LEEA 332
Cdd:PLN03088 86 YQTA 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
241-309 |
2.54e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 2.54e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 186464690 241 NEDSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMN 309
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
318-381 |
2.58e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 2.58e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 318 KRGLALSQLGRLEEAINDYTQAIRIN---PNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYA 381
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
347-380 |
2.71e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 2.71e-04
10 20 30
....*....|....*....|....*....|....
gi 186464690 347 AVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHY 380
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
282-447 |
3.22e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 282 YYKRGLTHYQIGDYEAAIADYSQAIqmniqdaksynkrglalsqlgRLEEAINDYTQairINPNVAVAYKNRaearshiG 361
Cdd:PRK02603 38 YYRDGMSAQADGEYAEALENYEEAL---------------------KLEEDPNDRSY---ILYNMGIIYASN-------G 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 362 DNQGAIEDYTQAIKINPHYADAYKNRGiaryllssqpgfpqaikinpkdaIAYKKRG-----NARSDLGD--FEGAIEDY 434
Cdd:PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIA-----------------------VIYHKRGekaeeAGDQDEAEalFDKAAEYW 143
|
170
....*....|....
gi 186464690 435 TQAIQINP-NYADA 447
Cdd:PRK02603 144 KQAIRLAPnNYIEA 157
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
279-309 |
3.27e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 3.27e-04
10 20 30
....*....|....*....|....*....|.
gi 186464690 279 INLYYKRGLTHYQIGDYEAAIADYSQAIQMN 309
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
416-474 |
3.33e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.33e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186464690 416 KRGNARSDLGDFEGAIEDYTQAIQIN---PNYADAYYNRDNAHSDLGDFERAIEDYTQAIQI 474
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
380-513 |
3.57e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 380 YADAYKNRGIARYLLSSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAiQINPNYADAYYNRDNAHSDLG 459
Cdd:COG4785 9 LLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRA-LALPDLAQLYYERGVAYDSLG 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 186464690 460 DFERAIEDYTQAIQINynyadayynrgnirleiadkqgaiedfHKAADIYRKEG 513
Cdd:COG4785 88 DYDLAIADFDQALELD---------------------------PDLAEAYNNRG 114
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
293-345 |
3.87e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 3.87e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 186464690 293 GDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPN 345
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
411-443 |
6.31e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 6.31e-04
10 20 30
....*....|....*....|....*....|...
gi 186464690 411 AIAYKKRGNARSDLGDFEGAIEDYTQAIQINPN 443
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
289-349 |
7.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 38.35 E-value: 7.01e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186464690 289 HYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVA 349
Cdd:pfam13371 5 YLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
409-512 |
7.31e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.38 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 409 KDAIAYKKRGNARSDLGDFEGAIEDYTQAIQ--INPnYADAY--YNRDNAHSDLGDFERAIEDYTQAIQIN-------YN 477
Cdd:CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRleIDP-YDRSYilYNIGLIHTSNGEHTKALEYYFQALERNpflpqalNN 111
|
90 100 110
....*....|....*....|....*....|....*
gi 186464690 478 YADAYYNRGNIRLEIADKQGAIEDFHKAADiYRKE 512
Cdd:CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAE-YWKQ 145
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
425-466 |
7.70e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 7.70e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 186464690 425 GDFEGAIEDYTQAIQINPNYADAYYNRDNAHSDLGDFERAIE 466
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
325-383 |
8.70e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.97 E-value: 8.70e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 186464690 325 QLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHYADA 383
Cdd:pfam13371 7 REEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
285-538 |
1.20e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 285 RGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNvavayknraearshiGDNQ 364
Cdd:PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH---------------SSNR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 365 GAIEDYtqaIKINphyadayknrgiaRYLLSSQPGfPQAIKINpkdaiaykkrgnarsdlgDFEGAIEDYTQAIQINPNy 444
Cdd:PRK11447 340 DKWESL---LKVN-------------RYWLLIQQG-DAALKAN------------------NLAQAERLYQQARQVDNT- 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 445 aDAYynrdnAHSDLGDFERAIEDYTQaiqinynyADAYYNRGnIRLEiADKQGAIEdfhKAADIYRKEGK------LEAL 518
Cdd:PRK11447 384 -DSY-----AVLGLGDVAMARKDYAA--------AERYYQQA-LRMD-PGNTNAVR---GLANLYRQQSPekalafIASL 444
|
250 260
....*....|....*....|..
gi 186464690 519 KDTQERILDlEIEESL--DILK 538
Cdd:PRK11447 445 SASQRRSID-DIERSLqnDRLA 465
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-309 |
1.23e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.23e-03
10 20
....*....|....*....|....*...
gi 186464690 282 YYKRGLTHYQIGDYEAAIADYSQAIQMN 309
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
347-380 |
1.27e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.27e-03
10 20 30
....*....|....*....|....*....|....
gi 186464690 347 AVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHY 380
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
453-509 |
1.90e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.90e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 453 NAHSDLGDFERAIEDYTQAIQINYN---YADAYYNRGNIRLEIADKQGAIEDFHKAADIY 509
Cdd:pfam13432 5 RAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
321-447 |
2.09e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 321 LALSQLGRLEEAINDYTQAIRINPN---VAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPHyadayknrgiaryllssq 397
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD------------------ 62
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 186464690 398 pgfpqaikiNPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADA 447
Cdd:COG1729 63 ---------SPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
328-514 |
2.42e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 39.87 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 328 RLEEAINDYTQAirinpnvAVAYKNR-------------AEARSHIGDNQGAIEDYTQAikinphyADAYKnrgiaryll 394
Cdd:cd15832 27 KYEEAAELYEKA-------ANAFKLAknweeagdaflkaAECQLKLDSKHDAANAYVEA-------AKCYK--------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 395 ssqpgfpqaiKINPKDAIAYkkrgnarsdlgdFEGAIEDYT------QAIQINPNYADAYYNrdnahsDLGDFERAIEDY 468
Cdd:cd15832 84 ----------KVDPQEAVNC------------LEKAIEIYTemgrfrQAAKHLKEIAELYEN------ELGDLDKAIEAY 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 186464690 469 TQAiqinynyADAYYNRG------NIRLEIADKQGAIEDFHKAADIYRKEGK 514
Cdd:cd15832 136 EQA-------ADYYEGEGanslanKCYLKVADLAAQLEDYDKAIEIYEQVAR 180
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
434-466 |
2.80e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 35.60 E-value: 2.80e-03
10 20 30
....*....|....*....|....*....|...
gi 186464690 434 YTQAIQINPNYADAYYNRDNAHSDLGDFERAIE 466
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
243-311 |
2.83e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.60 E-value: 2.83e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 243 DSNTLYAKLGDEYFEKGEYTNAIVNYGKALKVTS--------SDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQ 311
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
413-514 |
3.33e-03 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 39.47 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 413 AYKKrgnarsdlGDFEGAIEDYTQAIQI-----NPNYAdAYYNRDNAH---SDLGDFERAIEDYTQAiqinynyADAYYN 484
Cdd:pfam14938 76 CYKK--------VDPEEAVRALEKAIEIytemgRFRRA-AKHKKEIAElyeQELGDLEKAIEAYEQA-------ADWYEG 139
|
90 100 110
....*....|....*....|....*....|....*.
gi 186464690 485 RG------NIRLEIADKQGAIEDFHKAADIYRKEGK 514
Cdd:pfam14938 140 EGasalanKCYLKVADLSAELEDYPKAIEIYEKVAK 175
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
250-313 |
3.67e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 3.67e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 186464690 250 KLGDEYFEKGEYTNAIVNYGKALKV---TSSDINLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDA 313
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
281-423 |
4.30e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 39.10 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 281 LYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHI 360
Cdd:PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 186464690 361 GDNQGAIEDYTQaikinpHYADAYKN--RGIARYLLSSqpgfpqaiKINPKDAIAY-KKRGNARSD 423
Cdd:PRK11189 146 GRYELAQDDLLA------FYQDDPNDpyRALWLYLAES--------KLDPKQAKENlKQRYEKLDK 197
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
282-378 |
5.24e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 38.06 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 282 YYKRGLTHYQIGDYEAAIADYSQAIQMNIqDA--KSY--NKRGLALSQLGRLEEAINDYTQAIRINP-------NVAVAY 350
Cdd:CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPydRSYilYNIGLIHTSNGEHTKALEYYFQALERNPflpqalnNMAVIC 116
|
90 100 110
....*....|....*....|....*....|....*
gi 186464690 351 KNRAEARSHIGDNQ-------GAIEDYTQAIKINP 378
Cdd:CHL00033 117 HYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALAP 151
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
281-309 |
6.96e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.42 E-value: 6.96e-03
10 20
....*....|....*....|....*....
gi 186464690 281 LYYKRGLTHYQIGDYEAAIADYSQAIQMN 309
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
445-477 |
7.24e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.42 E-value: 7.24e-03
10 20 30
....*....|....*....|....*....|...
gi 186464690 445 ADAYYNRDNAHSDLGDFERAIEDYTQAIQINYN 477
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
445-511 |
7.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 7.62e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186464690 445 ADAYYNRDNAHSDLGDFERAIEDYTQAIQI--------NYNYADAYYNRGNIRLEIADKQGAIEDFHKAADIYRK 511
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
404-447 |
9.03e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 35.27 E-value: 9.03e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 186464690 404 IKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADA 447
Cdd:pfam13371 22 LLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
238-476 |
9.47e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 37.92 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 238 EYNNEDSNTLYAKlGDEYFEKGEYTNAIVNYgKALK--------VTSSDINLYYkrglTHYQIGDYEAAIADYSQAIQMN 309
Cdd:TIGR03302 27 PVEEWPAEELYEE-AKEALDSGDYTEAIKYF-EALEsrypfspyAEQAQLDLAY----AYYKSGDYAEAIAAADRFIRLH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 310 IQDAKS---YNKRGLALSQL--------GRLEEAINDYTQAIRINPN---VAVAYKNRAEARSHIGDNqgaiEDYtqaik 375
Cdd:TIGR03302 101 PNHPDAdyaYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPNseyAPDAKKRMDYLRNRLAGK----ELY----- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186464690 376 inphyadayknrgIARYllssqpgfpqaikinpkdaiaYKKRGNARSDLGDFEGAIEDYTQAiqinPNYADAYYNRDNAH 455
Cdd:TIGR03302 172 -------------VARF---------------------YLKRGAYVAAINRFQTVVENYPDT----PATEEALARLVEAY 213
|
250 260
....*....|....*....|.
gi 186464690 456 SDLGDFERAiEDYTQAIQINY 476
Cdd:TIGR03302 214 LKLGLTDLA-QDAAAVLGANY 233
|
|
| |
