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Conserved domains on  [gi|71084297|gb|AAZ23594|]
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skeletal muscle myosin heavy chain II-b transcript variant 8, partial [Mus musculus]

Protein Classification

Myosin_N domain-containing protein( domain architecture ID 10498017)

Myosin_N domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
 33-77 1.63e-14

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


:

Pssm-ID: 460670  Cd Length: 45  Bit Score: 61.29  E-value: 1.63e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 71084297   33 DAKSSVFVVDAKESYVKATVQSREGGKVTAKTEGGATVTVKDDQV 77
Cdd:pfam02736  1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVETEDGKTVTVKKDDV 45
 
Name Accession Description Interval E-value
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
 33-77 1.63e-14

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 460670  Cd Length: 45  Bit Score: 61.29  E-value: 1.63e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 71084297   33 DAKSSVFVVDAKESYVKATVQSREGGKVTAKTEGGATVTVKDDQV 77
Cdd:pfam02736  1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVETEDGKTVTVKKDDV 45
COG5022 COG5022
Myosin heavy chain [General function prediction only];
30-95 5.24e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 34.28  E-value: 5.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71084297   30 KPFDAKSSVFVVDAKESYVKATVqsreggKVTAKTEGGATVTVK--DDQVFSMNPPKYDKIEDMAMMT 95
Cdd:COG5022   14 IPDEEKGWIWAEIIKEAFNKGKV------TEEGKKEDGESVSVKkkVLGNDRIKLPKFDGVDDLTELS 75
 
Name Accession Description Interval E-value
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
 33-77 1.63e-14

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 460670  Cd Length: 45  Bit Score: 61.29  E-value: 1.63e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 71084297   33 DAKSSVFVVDAKESYVKATVQSREGGKVTAKTEGGATVTVKDDQV 77
Cdd:pfam02736  1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVETEDGKTVTVKKDDV 45
COG5022 COG5022
Myosin heavy chain [General function prediction only];
30-95 5.24e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 34.28  E-value: 5.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71084297   30 KPFDAKSSVFVVDAKESYVKATVqsreggKVTAKTEGGATVTVK--DDQVFSMNPPKYDKIEDMAMMT 95
Cdd:COG5022   14 IPDEEKGWIWAEIIKEAFNKGKV------TEEGKKEDGESVSVKkkVLGNDRIKLPKFDGVDDLTELS 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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