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Conserved domains on  [gi|187953847|gb|AAI38213|]
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Tetratricopeptide repeat domain 14 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-434 7.23e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 7.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187953847 391 leeeeKFLNAESYYKKALTLDETFKDA----EDALQKLHKYMQVILYF 434
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAylrlARAYRALGRPDEAIAAL 129
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 4.12e-06

Ribosomal protein S1-like RNA-binding domain;


:

Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.13  E-value: 4.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847   123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 187953847   203 AVSL 206
Cdd:smart00316  68 ILSL 71
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-434 7.23e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 7.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187953847 391 leeeeKFLNAESYYKKALTLDETFKDA----EDALQKLHKYMQVILYF 434
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAylrlARAYRALGRPDEAIAAL 129
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 4.12e-06

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.13  E-value: 4.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847   123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 187953847   203 AVSL 206
Cdd:smart00316  68 ILSL 71
TPR_11 pfam13414
TPR repeat;
316-354 2.26e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 2.26e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 187953847  316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 354
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 329-410 5.27e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 5.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 329 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 408
Cdd:cd24142   23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                 ..
gi 187953847 409 TL 410
Cdd:cd24142   93 EI 94
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 114-206 8.42e-05

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 44.26  E-value: 8.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:COG0539  179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                         90
                 ....*....|....*...
gi 187953847 189 RAGIKDIDRYHEKLAVSL 206
Cdd:COG0539  240 EVKVLKIDREKERISLSL 257
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
114-206 1.52e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 44.17  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:PRK00087 467 KKEETWNSLEEGDVVEGEVKRLTDFGAF---VDIG-GVdgllhVSEISW-------------GRVEK--PSDVLKVGDEI 527

                         90
                 ....*....|....*...
gi 187953847 189 RAGIKDIDRYHEKLAVSL 206
Cdd:PRK00087 528 KVYILDIDKENKKLSLSL 545
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 282-424 1.97e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  282 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 359
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187953847  360 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALtLDETFKDAEDALQKL 424
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETL 284
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 288-413 2.63e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  288 FSEDDFASALRK------KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIE 361
Cdd:PRK11447  245 FSDGDSVAAARSqlaeqqKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 187953847  362 DFELALENCPTHRNARKY--LCQT-----LVERGGQLEEEEKFLNAESYYKKALTLDET 413
Cdd:PRK11447  325 QFEKALALDPHSSNRDKWesLLKVnrywlLIQQGDAALKANNLAQAERLYQQARQVDNT 383
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 128-205 4.03e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.82  E-value: 4.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187953847 128 VIGRISSIREFGFFmvlICLGSGIvrdishleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 205
Cdd:cd00164    1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
S1 pfam00575
S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is ...
 123-206 7.31e-03

S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.


Pssm-ID: 425760 [Multi-domain]  Cd Length: 72  Bit Score: 34.96  E-value: 7.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  123 ERGDIVIGRISSIREFGFFmvlICLGSGivrdishleITALCPLRDVPSHSnHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:pfam00575   2 EKGDVVEGEVTRVTKGGAF---VDLGNG---------VEGFIPISELSDDH-VEDPDEVIKVGDEVKVKVLKVDKDRRRI 68


                  ....
gi 187953847  203 AVSL 206
Cdd:pfam00575  69 ILSI 72
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-434 7.23e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 7.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187953847 391 leeeeKFLNAESYYKKALTLDETFKDA----EDALQKLHKYMQVILYF 434
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAylrlARAYRALGRPDEAIAAL 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
312-421 4.87e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 4.87e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQL 391
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL-GRY 92

                         90       100       110
                 ....*....|....*....|....*....|
gi 187953847 392 EEeekflnAESYYKKALTLDETFKDAEDAL 421
Cdd:COG0457   93 EE------ALEDYDKALELDPDDAEALYNL 116
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
231-427 8.16e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 8.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 231 YYRRSVELNSNSLESYENimqssLGFVnpgvveflLEKLG-IDEShppslmrglqsknfsEDDFASALRKKQSASWALkc 309
Cdd:COG0457   30 DYEKALELDPDDAEALYN-----LGLA--------YLRLGrYEEA---------------LADYEQALELDPDDAEAL-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 310 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgG 389
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL-G 158

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 187953847 390 QLEEEEKFLNAESYYKKALTLDETFKDAEDALQKLHKY 427
Cdd:COG0457  159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVL 196
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 316-421 3.26e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 3.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLcqtlverGGQLEEEE 395
Cdd:COG4235   27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL-------GLAAFQQG 99

                         90       100
                 ....*....|....*....|....*.
gi 187953847 396 KFLNAESYYKKALTLDEtfKDAEDAL 421
Cdd:COG4235  100 DYAEAIAAWQKLLALLP--ADAPARL 123
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 293-425 3.38e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 3.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 293 FASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPT 372
Cdd:COG2956   65 HQKLLERDPDRAEAL--LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 187953847 373 HRNArkylcqtLVERGGQLEEEEKFLNAESYYKKALTLDETFKDAEDALQKLH 425
Cdd:COG2956  143 NAHA-------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 312-417 4.68e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.63  E-value: 4.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLvERGGQL 391
Cdd:COG3914  118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL-QDLGRL 196

                         90       100
                 ....*....|....*....|....*.
gi 187953847 392 EEeekflnAESYYKKALTLDETFKDA 417
Cdd:COG3914  197 EE------AIAAYRRALELDPDNADA 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 316-411 1.82e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgqleeee 395
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG------- 136

                         90
                 ....*....|....*.
gi 187953847 396 KFLNAESYYKKALTLD 411
Cdd:COG5010  137 QDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
316-411 1.87e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 1.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEdFELALENCPTHRNARKYLCQTLVERGgqleeee 395
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG------- 73

                         90
                 ....*....|....*.
gi 187953847 396 KFLNAESYYKKALTLD 411
Cdd:COG3063   74 DYDEALAYLERALELD 89
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-411 4.58e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 4.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG4783   24 EALLEKALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 187953847 370 CPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALTLD 411
Cdd:COG4783  102 DPEHPEAYLRLARAYRALG-------RPDEAIAALEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 313-424 5.80e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 5.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 313 GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLE 392
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA-GLLD 93

                         90       100       110
                 ....*....|....*....|....*....|..
gi 187953847 393 EeekflnAESYYKKALTLDEtfkDAEDALQKL 424
Cdd:COG2956   94 R------AEELLEKLLELDP---DDAEALRLL 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 320-434 3.38e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 3.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 320 GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekfln 399
Cdd:COG3914   92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL-GRLEE------ 164

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 187953847 400 AESYYKKALTLDETFKDAE----DALQKLHKYMQVILYF 434
Cdd:COG3914  165 AIAALRRALELDPDNAEALnnlgNALQDLGRLEEAIAAY 203
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 291-412 2.44e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 291 DDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENC 370
Cdd:COG2956   29 DLLEEALELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 187953847 371 PTHRNARKYLCQTlverggqLEEEEKFLNAESYYKKALTLDE 412
Cdd:COG2956  107 PDDAEALRLLAEI-------YEQEGDWEKAIEVLERLLKLGP 141
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
291-421 3.48e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.77  E-value: 3.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 291 DDFASALRKKQSASWALKCVKI----GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELA 366
Cdd:COG4785   54 AAAALAAERIDRALALPDLAQLyyerGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 187953847 367 LENCPTHRNARKYLCQTLvERGGQLEEeekflnAESYYKKALTLDEtfKDAEDAL 421
Cdd:COG4785  134 LELDPDYAYAYLNRGIAL-YYLGRYEL------AIADLEKALELDP--NDPERAL 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 230-426 6.31e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 6.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 230 LYYRRSVELNSNSLESYENImqsslgfvnpGVVEFLLEKLGIDESHppslmrglqsknfseddFASALRKKqsASWALKC 309
Cdd:COG3914   99 ALYRRALALNPDNAEALFNL----------GNLLLALGRLEEALAA-----------------LRRALALN--PDFAEAY 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 310 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGG 389
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 187953847 390 qLEEEEKFLNAESYYKKALTLDETF------KDAEDALQKLHK 426
Cdd:COG3914  230 -WEVYDRFEELLAALARGPSELSPFallylpDDDPAELLALAR 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 292-429 1.06e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 1.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 292 DFASALRKKQSASWALKCvKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCP 371
Cdd:COG2956  131 EVLERLLKLGPENAHAYC-ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187953847 372 THRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLD-------------ETFKDAEDALQKLHKYMQ 429
Cdd:COG2956  210 DYLPALPRLAELYEKL-GDPEE------ALELLRKALELDpsddlllaladllERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 290-425 1.56e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 1.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 290 EDDFASALRKKQSASWALKcvKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG2956   96 EELLEKLLELDPDDAEALR--LLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 187953847 370 CPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALTLDETFKDAEDALQKLH 425
Cdd:COG2956  174 DPDCARALLLLAELYLEQG-------DYEEAIAALERALEQDPDYLPALPRLAELY 222
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
333-427 1.53e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 333 LEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLDE 412
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-GRYEE------ALADYEQALELDP 73

                         90
                 ....*....|....*....
gi 187953847 413 TFKDA----EDALQKLHKY 427
Cdd:COG0457   74 DDAEAlnnlGLALQALGRY 92
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 4.12e-06

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.13  E-value: 4.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847   123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 187953847   203 AVSL 206
Cdd:smart00316  68 ILSL 71
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
290-371 7.04e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 7.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMnEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG3063   12 EEYYEKALELDPDNADAL--NNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88


                 ..
gi 187953847 370 CP 371
Cdd:COG3063   89 DP 90
TPR_11 pfam13414
TPR repeat;
316-354 2.26e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 2.26e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 187953847  316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 354
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 324-417 3.69e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 3.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 324 DAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEeeekflnAESY 403
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE-------AEEL 73

                         90
                 ....*....|....
gi 187953847 404 YKKALTLDETFKDA 417
Cdd:COG4235   74 LERALALDPDNPEA 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-373 3.96e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 3.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG4783   58 IVLLHEALELDPDEPEAR--LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                 ....
gi 187953847 370 CPTH 373
Cdd:COG4783  136 DPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 329-410 5.27e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 5.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 329 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 408
Cdd:cd24142   23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                 ..
gi 187953847 409 TL 410
Cdd:cd24142   93 EI 94
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 114-206 8.42e-05

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 44.26  E-value: 8.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:COG0539  179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                         90
                 ....*....|....*...
gi 187953847 189 RAGIKDIDRYHEKLAVSL 206
Cdd:COG0539  240 EVKVLKIDREKERISLSL 257
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
114-206 1.52e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 44.17  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:PRK00087 467 KKEETWNSLEEGDVVEGEVKRLTDFGAF---VDIG-GVdgllhVSEISW-------------GRVEK--PSDVLKVGDEI 527

                         90
                 ....*....|....*...
gi 187953847 189 RAGIKDIDRYHEKLAVSL 206
Cdd:PRK00087 528 KVYILDIDKENKKLSLSL 545
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 282-424 1.97e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  282 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 359
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187953847  360 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALtLDETFKDAEDALQKL 424
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETL 284
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 312-371 3.36e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 3.36e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCP 371
Cdd:COG5010   94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 338-421 9.51e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 9.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 338 QNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLDETFKDA 417
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDE------AIVLLHEALELDPDEPEA 74


                 ....
gi 187953847 418 EDAL 421
Cdd:COG4783   75 RLNL 78
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 328-429 1.36e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 328 EYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKA 407
Cdd:COG5010   42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS-GDKDE------AKEYYEKA 114

                         90       100
                 ....*....|....*....|..
gi 187953847 408 LTLDETFKDAEDALQKLHKYMQ 429
Cdd:COG5010  115 LALSPDNPNAYSNLAALLLSLG 136
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 283-378 2.03e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 2.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847 283 LQSKNFSE--DDFASALRKKQSASWALKC-VKIGVDYFKVGRHVDAMNEYNKALEIDKQNV---EALVARGALYATKGSL 356
Cdd:COG1729    4 LKAGDYDEaiAAFKAFLKRYPNSPLAPDAlYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDY 83

                         90       100
                 ....*....|....*....|..
gi 187953847 357 NKAIEDFELALENCPTHRNARK 378
Cdd:COG1729   84 DKARATLEELIKKYPDSEAAKE 105
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 336-434 2.18e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  336 DKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAES--YYKKALTLDET 413
Cdd:TIGR02917  18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSlgYPKNQVLPLLA 97

                          90       100
                  ....*....|....*....|.
gi 187953847  414 FkdaedALQKLHKYMQVILYF 434
Cdd:TIGR02917  98 R-----AYLLQGKFQQVLDEL 113
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 288-413 2.63e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  288 FSEDDFASALRK------KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIE 361
Cdd:PRK11447  245 FSDGDSVAAARSqlaeqqKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 187953847  362 DFELALENCPTHRNARKY--LCQT-----LVERGGQLEEEEKFLNAESYYKKALTLDET 413
Cdd:PRK11447  325 QFEKALALDPHSSNRDKWesLLKVnrywlLIQQGDAALKANNLAQAERLYQQARQVDNT 383
TPR_1 pfam00515
Tetratricopeptide repeat;
340-373 2.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 187953847  340 VEALVARGALYATKGSLNKAIEDFELALENCPTH 373
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 128-205 4.03e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.82  E-value: 4.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187953847 128 VIGRISSIREFGFFmvlICLGSGIvrdishleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 205
Cdd:cd00164    1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 294-426 5.69e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 5.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  294 ASALRKKQSASWALKcvkiGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTH 373
Cdd:TIGR02917 593 AADAAPDSPEAWLML----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187953847  374 RNARKYLCQTLVErGGQLEEEEKFLNA--ESYYKKAL---------TLDETFKDAEDALQKLHK 426
Cdd:TIGR02917 669 TEAQIGLAQLLLA-AKRTESAKKIAKSlqKQHPKAALgfelegdlyLRQKDYPAAIQAYRKALK 731
S1 pfam00575
S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is ...
 123-206 7.31e-03

S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.


Pssm-ID: 425760 [Multi-domain]  Cd Length: 72  Bit Score: 34.96  E-value: 7.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  123 ERGDIVIGRISSIREFGFFmvlICLGSGivrdishleITALCPLRDVPSHSnHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:pfam00575   2 EKGDVVEGEVTRVTKGGAF---VDLGNG---------VEGFIPISELSDDH-VEDPDEVIKVGDEVKVKVLKVDKDRRRI 68


                  ....
gi 187953847  203 AVSL 206
Cdd:pfam00575  69 ILSI 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 326-429 7.89e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 7.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187953847  326 MNEYNKALEI--------DKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKF 397
Cdd:TIGR02917 103 QGKFQQVLDElpgktlldDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE-NRFDEARAL 181

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 187953847  398 LNaesyykKALTLDETFKDA--------------EDALQKLHKYMQ 429
Cdd:TIGR02917 182 ID------EVLTADPGNVDAlllkgdlllslgniELALAAYRKAIA 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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