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Conserved domains on  [gi|111307296|gb|AAI20489|]
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Expressed sequence AU021034 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM216B super family cl20976
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 6-106 5.44e-43

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


The actual alignment was detected with superfamily member pfam15107:

Pssm-ID: 434464  Cd Length: 111  Bit Score: 137.26  E-value: 5.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111307296    6 PQNVPRIPRIQVPAAAADNSLLKDLNQGQRCYLYSIMRIYDSRPQWKALQTRYIHSLGYQQHLGYITQQEALSCAAVLRH 85
Cdd:pfam15107  11 LWKVPQIPTIRVPKSASDTSLLKDLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQHQQLLGYITQHEALACSAVLRD 90

                          90       100
                  ....*....|....*....|.
gi 111307296   86 STMRASATVAPQRTIlPRVFS 106
Cdd:pfam15107  91 STKRASAKTAWRRTI-PREAS 110
 
Name Accession Description Interval E-value
FAM216B pfam15107
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 6-106 5.44e-43

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


Pssm-ID: 434464  Cd Length: 111  Bit Score: 137.26  E-value: 5.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111307296    6 PQNVPRIPRIQVPAAAADNSLLKDLNQGQRCYLYSIMRIYDSRPQWKALQTRYIHSLGYQQHLGYITQQEALSCAAVLRH 85
Cdd:pfam15107  11 LWKVPQIPTIRVPKSASDTSLLKDLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQHQQLLGYITQHEALACSAVLRD 90

                          90       100
                  ....*....|....*....|.
gi 111307296   86 STMRASATVAPQRTIlPRVFS 106
Cdd:pfam15107  91 STKRASAKTAWRRTI-PREAS 110
 
Name Accession Description Interval E-value
FAM216B pfam15107
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 6-106 5.44e-43

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


Pssm-ID: 434464  Cd Length: 111  Bit Score: 137.26  E-value: 5.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111307296    6 PQNVPRIPRIQVPAAAADNSLLKDLNQGQRCYLYSIMRIYDSRPQWKALQTRYIHSLGYQQHLGYITQQEALSCAAVLRH 85
Cdd:pfam15107  11 LWKVPQIPTIRVPKSASDTSLLKDLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQHQQLLGYITQHEALACSAVLRD 90

                          90       100
                  ....*....|....*....|.
gi 111307296   86 STMRASATVAPQRTIlPRVFS 106
Cdd:pfam15107  91 STKRASAKTAWRRTI-PREAS 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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