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Conserved domains on  [gi|37589211|gb|AAH59224|]
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RIKEN cDNA 1200009O22 gene [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
104-359 8.13e-33

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 131.98  E-value: 8.13e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 104 EKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEigrlsrgSFEGLESLVKLRLDGNVLGALPDAvFAPLGNLLY 183
Cdd:COG4886  69 LSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKE 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 184 LHLESNRIRFLGKnAFSQLGKLRFLNLSANELQpSLrhAATFVPLRSLSTLILSANSLQHLgPRVFQHLPRLGLLSLSGN 263
Cdd:COG4886 141 LDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLT-DL--PEELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGN 215

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 264 QLTHLaPEAFWGLEALRELRLEGNRLNQLPLtlLEPLHSLEALDLSGNELSALHPAtfGHQGRLRELSLRDNALSALSGD 343
Cdd:COG4886 216 QLTDL-PEPLANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDLKLK 290

                       250
                ....*....|....*.
gi 37589211 344 IFAASPALYRLDLDGN 359
Cdd:COG4886 291 ELELLLGLNSLLLLLL 306
LRR_8 pfam13855
Leucine rich repeat;
65-119 1.07e-09

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.84  E-value: 1.07e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 37589211    65 SLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLL 119
Cdd:pfam13855   7 DLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PCC super family cl28216
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 332-441 7.10e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


The actual alignment was detected with superfamily member TIGR00864:

Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.53  E-value: 7.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211    332 LRDNALSALSGDIFAASPALYRLDLDGNGWTCDCRLRGLKRWMGNWHSQGRLLTVfVQCRHPPALRGKYLdyLDDQLLQN 411
Cdd:TIGR00864    2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA-ALCAGPGALAGQPL--LGIPLLDS 78

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 37589211    412 G------SCVDPSPSPTAGSRQWPLP-TSSEEGMTPP 441
Cdd:TIGR00864   79 GcdeeyvACLKDNSSGGGAARSELVIfSAAHEGLFQP 115
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-56 1.92e-03

Leucine rich repeat N-terminal domain;


:

Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 36.53  E-value: 1.92e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 37589211     27 CPERCDCqHPQHLLCTNRGLRAVPktSSLP 56
Cdd:smart00013   2 CPAPCNC-SGTAVDCSGRGLTEVP--LDLP 28
FN3 super family cl21522
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 587-665 2.69e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


The actual alignment was detected with superfamily member pfam00041:

Pssm-ID: 473895 [Multi-domain]  Cd Length: 85  Bit Score: 37.39  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   587 NLTVEAVSANSASVRWavrehRSPRPQGGA--RFRLLF-DRFGQQPKFQRFVylPERSDSATLHELRGDTPYLVCVEGVL 663
Cdd:pfam00041   5 NLTVTDVTSTSLTVSW-----TPPPDGNGPitGYEVEYrPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQAVN 77


                  ..
gi 37589211   664 GG 665
Cdd:pfam00041  78 GG 79
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
104-359 8.13e-33

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 131.98  E-value: 8.13e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 104 EKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEigrlsrgSFEGLESLVKLRLDGNVLGALPDAvFAPLGNLLY 183
Cdd:COG4886  69 LSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKE 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 184 LHLESNRIRFLGKnAFSQLGKLRFLNLSANELQpSLrhAATFVPLRSLSTLILSANSLQHLgPRVFQHLPRLGLLSLSGN 263
Cdd:COG4886 141 LDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLT-DL--PEELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGN 215

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 264 QLTHLaPEAFWGLEALRELRLEGNRLNQLPLtlLEPLHSLEALDLSGNELSALHPAtfGHQGRLRELSLRDNALSALSGD 343
Cdd:COG4886 216 QLTDL-PEPLANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDLKLK 290

                       250
                ....*....|....*.
gi 37589211 344 IFAASPALYRLDLDGN 359
Cdd:COG4886 291 ELELLLGLNSLLLLLL 306
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-355 4.15e-18

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 84.07  E-value: 4.15e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  65 SLGGNFITNITafDFHRLGQLRRLDLQYNQIRSLhpKTFEKLSRLEELYLGNNLLQALVPgtLAPLRKLRILYANGNEIG 144
Cdd:cd21340   8 YLNDKNITKID--NLSLCKNLKVLYLYDNKITKI--ENLEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNRIS 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 145 RLsrgsfEGLESLVKLRldgnvlgalpdavfaplgnllYLHLESNRirflgknafsqlgklrflnLSANElqpSLrhaaT 224
Cdd:cd21340  82 VV-----EGLENLTNLE---------------------ELHIENQR-------------------LPPGE---KL----T 109

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 225 FVPlRSLSTLilsANSLQHLgprvfqhlprlgllSLSGNQLTHLAPeafwglealrelrlegnrlnqlpltlLEPLHSLE 304
Cdd:cd21340 110 FDP-RSLAAL---SNSLRVL--------------NISGNNIDSLEP--------------------------LAPLRNLE 145

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 37589211 305 ALDLSGNELSALHP--ATFGHQGRLRELSLRDNALSALSG---DIFAASPALYRLD 355
Cdd:cd21340 146 QLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKPKyrdKIILASKSLEVLD 201
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 58-362 1.52e-17

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 87.60  E-value: 1.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   58 PQDVLTYS------LGGNF--------ITNITAFDF-------------HRLGQLRRLD---LQYNQIRSLHPKTFEKLS 107
Cdd:PLN00113 157 PNDIGSFSslkvldLGGNVlvgkipnsLTNLTSLEFltlasnqlvgqipRELGQMKSLKwiyLGYNNLSGEIPYEIGGLT 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  108 RLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVL-GALPDAVfAPLGNLLYLHL 186
Cdd:PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLsGEIPELV-IQLQNLEILHL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  187 ESNriRFLGK------------------NAFS-----QLGK---LRFLNLSANELqpSLRHAATFVPLRSLSTLILSANS 240
Cdd:PLN00113 316 FSN--NFTGKipvaltslprlqvlqlwsNKFSgeipkNLGKhnnLTVLDLSTNNL--TGEIPEGLCSSGNLFKLILFSNS 391

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  241 LQ-----HLG-------------------PRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNR-LNQLPLT 295
Cdd:PLN00113 392 LEgeipkSLGacrslrrvrlqdnsfsgelPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKfFGGLPDS 471

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37589211  296 LLEplHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALYRLDLDGNGWT 362
Cdd:PLN00113 472 FGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
LRR_8 pfam13855
Leucine rich repeat;
229-289 3.56e-16

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 73.33  E-value: 3.56e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37589211   229 RSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRL 289
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
65-119 1.07e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.84  E-value: 1.07e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 37589211    65 SLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLL 119
Cdd:pfam13855   7 DLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 332-441 7.10e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.53  E-value: 7.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211    332 LRDNALSALSGDIFAASPALYRLDLDGNGWTCDCRLRGLKRWMGNWHSQGRLLTVfVQCRHPPALRGKYLdyLDDQLLQN 411
Cdd:TIGR00864    2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA-ALCAGPGALAGQPL--LGIPLLDS 78

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 37589211    412 G------SCVDPSPSPTAGSRQWPLP-TSSEEGMTPP 441
Cdd:TIGR00864   79 GcdeeyvACLKDNSSGGGAARSELVIfSAAHEGLFQP 115
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-56 1.92e-03

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 36.53  E-value: 1.92e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 37589211     27 CPERCDCqHPQHLLCTNRGLRAVPktSSLP 56
Cdd:smart00013   2 CPAPCNC-SGTAVDCSGRGLTEVP--LDLP 28
PLN03150 PLN03150
hypothetical protein; Provisional
 43-139 2.19e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   43 NRGLRA-VPktSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQA 121
Cdd:PLN03150 427 NQGLRGfIP--NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

                         90       100
                 ....*....|....*....|
gi 37589211  122 LVPGTLA--PLRKLRILYAN 139
Cdd:PLN03150 505 RVPAALGgrLLHRASFNFTD 524
fn3 pfam00041
Fibronectin type III domain;
587-665 2.69e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 37.39  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   587 NLTVEAVSANSASVRWavrehRSPRPQGGA--RFRLLF-DRFGQQPKFQRFVylPERSDSATLHELRGDTPYLVCVEGVL 663
Cdd:pfam00041   5 NLTVTDVTSTSLTVSW-----TPPPDGNGPitGYEVEYrPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQAVN 77


                  ..
gi 37589211   664 GG 665
Cdd:pfam00041  78 GG 79
LRRCT smart00082
Leucine rich repeat C-terminal domain;
359-406 4.05e-03

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 35.87  E-value: 4.05e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 37589211    359 NGWTCDCRLRGLKRW-MGNWHSQGRLLTVfvqCRHPPALRGKYLDYLDD 406
Cdd:smart00082   1 NPFICDCELRWLLRWlQANEHLQDPVDLR---CASPSSLRGPLLELLHS 46
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 587-659 5.13e-03

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 36.82  E-value: 5.13e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37589211    587 NLTVEAVSANSASVRWavrehRSPRPQGGARFRLLFDRFGQQPKFQ-RFVYLPERSDSATLHELRGDTPYLVCV 659
Cdd:smart00060   6 NLRVTDVTSTSVTLSW-----EPPPDDGITGYIVGYRVEYREEGSEwKEVNVTPSSTSYTLTGLKPGTEYEFRV 74
LRR smart00370
Leucine-rich repeats, outliers;
82-104 5.90e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.63  E-value: 5.90e-03
                           10        20
                   ....*....|....*....|...
gi 37589211     82 LGQLRRLDLQYNQIRSLHPKTFE 104
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQ 23
LRR smart00370
Leucine-rich repeats, outliers;
300-323 9.46e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 9.46e-03
                           10        20
                   ....*....|....*....|....
gi 37589211    300 LHSLEALDLSGNELSALHPATFGH 323
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
104-359 8.13e-33

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 131.98  E-value: 8.13e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 104 EKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEigrlsrgSFEGLESLVKLRLDGNVLGALPDAvFAPLGNLLY 183
Cdd:COG4886  69 LSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKE 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 184 LHLESNRIRFLGKnAFSQLGKLRFLNLSANELQpSLrhAATFVPLRSLSTLILSANSLQHLgPRVFQHLPRLGLLSLSGN 263
Cdd:COG4886 141 LDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLT-DL--PEELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGN 215

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 264 QLTHLaPEAFWGLEALRELRLEGNRLNQLPLtlLEPLHSLEALDLSGNELSALHPAtfGHQGRLRELSLRDNALSALSGD 343
Cdd:COG4886 216 QLTDL-PEPLANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDLKLK 290

                       250
                ....*....|....*.
gi 37589211 344 IFAASPALYRLDLDGN 359
Cdd:COG4886 291 ELELLLGLNSLLLLLL 306
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-321 1.72e-32

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 130.82  E-value: 1.72e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  78 DFHRLGQLRRLDLQYNQIRSLhPKTFEKLSRLEELYLGNNLLQALvPGTLAPLRKLRILYANGNEIGRLSRgSFEGLESL 157
Cdd:COG4886 108 ELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNL 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 158 VKLRLDGNVLGALPDAvFAPLGNLLYLHLESNRIRFLGKnAFSQLGKLRFLNLSANELQ--PSLRHaatfvpLRSLSTLI 235
Cdd:COG4886 185 KELDLSNNQITDLPEP-LGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTdlPELGN------LTNLEELD 256

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 236 LSANSLQHLGPrvFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLNQLP--LTLLEPLHSLEALDLSGNEL 313
Cdd:COG4886 257 LSNNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEllILLLLLTTLLLLLLLLKGLL 334


                ....*...
gi 37589211 314 SALHPATF 321
Cdd:COG4886 335 VTLTTLAL 342
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
61-344 7.97e-32

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 128.90  E-value: 7.97e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  61 VLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNqirslhpKTFEKLSRLEELYLGNNLLQALvPGTLAPLRKLRILYANG 140
Cdd:COG4886  74 LLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSN 145

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 141 NEIGRLSRgSFEGLESLVKLRLDGNVLGALPDAvFAPLGNLLYLHLESNRIRFLGKnAFSQLGKLRFLNLSANELqpslr 220
Cdd:COG4886 146 NQLTDLPE-PLGNLTNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQL----- 217

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 221 haatfvplrslSTLilsanslqhlgPRVFQHLPRLGLLSLSGNQLTHLapEAFWGLEALRELRLEGNRLNQLPLtlLEPL 300
Cdd:COG4886 218 -----------TDL-----------PEPLANLTNLETLDLSNNQLTDL--PELGNLTNLEELDLSNNQLTDLPP--LANL 271

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 37589211 301 HSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDI 344
Cdd:COG4886 272 TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLI 315
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
106-359 7.56e-29

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 120.04  E-value: 7.56e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 106 LSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSrgSFEGLESLVKLRLDGNvlgalpdAVFAPLGNLLYLH 185
Cdd:COG4886  49 LTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLT--DLGDLTNLTELDLSGN-------EELSNLTNLESLD 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 186 LESNRIRFLGKnAFSQLGKLRFLNLSAN---ELQPSLRHaatfvpLRSLSTLILSANSLQHLgPRVFQHLPRLGLLSLSG 262
Cdd:COG4886 120 LSGNQLTDLPE-ELANLTNLKELDLSNNqltDLPEPLGN------LTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 263 NQLTHLaPEAFWGLEALRELRLEGNRLNQLPLTlLEPLHSLEALDLSGNELSALhpATFGHQGRLRELSLRDNALSALSG 342
Cdd:COG4886 192 NQITDL-PEPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQLTDL--PELGNLTNLEELDLSNNQLTDLPP 267

                       250
                ....*....|....*..
gi 37589211 343 diFAASPALYRLDLDGN 359
Cdd:COG4886 268 --LANLTNLKTLDLSNN 282
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
37-316 6.29e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 102.32  E-value: 6.29e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  37 QHLLCTNRGLRAVPKT-SSLPSpqdvLTY-SLGGNFITNITAFdFHRLGQLRRLDLQYNQIRSLhPKTFEKLSRLEELYL 114
Cdd:COG4886 139 KELDLSNNQLTDLPEPlGNLTN----LKSlDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 115 GNNLLQALvPGTLAPLRKLRILYANGNEIGRLSrgSFEGLESLVKLRLDGNVLGALPDAvfAPLGNLLYLHLESNRIRFL 194
Cdd:COG4886 213 SGNQLTDL-PEPLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDL 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 195 GKNAFSQLGKLRFL--NLSANELQPSLRHAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEA 272
Cdd:COG4886 288 KLKELELLLGLNSLllLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLL 367

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 37589211 273 FWGLEALRELRLEGNRLNQLPLTLLEPLHSLEALDLSGNELSAL 316
Cdd:COG4886 368 TLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAV 411
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-355 4.15e-18

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 84.07  E-value: 4.15e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  65 SLGGNFITNITafDFHRLGQLRRLDLQYNQIRSLhpKTFEKLSRLEELYLGNNLLQALVPgtLAPLRKLRILYANGNEIG 144
Cdd:cd21340   8 YLNDKNITKID--NLSLCKNLKVLYLYDNKITKI--ENLEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNRIS 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 145 RLsrgsfEGLESLVKLRldgnvlgalpdavfaplgnllYLHLESNRirflgknafsqlgklrflnLSANElqpSLrhaaT 224
Cdd:cd21340  82 VV-----EGLENLTNLE---------------------ELHIENQR-------------------LPPGE---KL----T 109

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 225 FVPlRSLSTLilsANSLQHLgprvfqhlprlgllSLSGNQLTHLAPeafwglealrelrlegnrlnqlpltlLEPLHSLE 304
Cdd:cd21340 110 FDP-RSLAAL---SNSLRVL--------------NISGNNIDSLEP--------------------------LAPLRNLE 145

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 37589211 305 ALDLSGNELSALHP--ATFGHQGRLRELSLRDNALSALSG---DIFAASPALYRLD 355
Cdd:cd21340 146 QLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKPKyrdKIILASKSLEVLD 201
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 58-362 1.52e-17

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 87.60  E-value: 1.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   58 PQDVLTYS------LGGNF--------ITNITAFDF-------------HRLGQLRRLD---LQYNQIRSLHPKTFEKLS 107
Cdd:PLN00113 157 PNDIGSFSslkvldLGGNVlvgkipnsLTNLTSLEFltlasnqlvgqipRELGQMKSLKwiyLGYNNLSGEIPYEIGGLT 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  108 RLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVL-GALPDAVfAPLGNLLYLHL 186
Cdd:PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLsGEIPELV-IQLQNLEILHL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  187 ESNriRFLGK------------------NAFS-----QLGK---LRFLNLSANELqpSLRHAATFVPLRSLSTLILSANS 240
Cdd:PLN00113 316 FSN--NFTGKipvaltslprlqvlqlwsNKFSgeipkNLGKhnnLTVLDLSTNNL--TGEIPEGLCSSGNLFKLILFSNS 391

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  241 LQ-----HLG-------------------PRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNR-LNQLPLT 295
Cdd:PLN00113 392 LEgeipkSLGacrslrrvrlqdnsfsgelPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKfFGGLPDS 471

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37589211  296 LLEplHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALYRLDLDGNGWT 362
Cdd:PLN00113 472 FGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 38-317 9.81e-17

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 79.83  E-value: 9.81e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  38 HLLCTNRGLRAVPKTSSLPSPQdVLtYsLGGNFITNITAFDFhrLGQLRRLDLQYNQIRslhpktfeklsRLEElylgnn 117
Cdd:cd21340   6 HLYLNDKNITKIDNLSLCKNLK-VL-Y-LYDNKITKIENLEF--LTNLTHLYLQNNQIE-----------KIEN------ 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 118 llqalvpgtLAPLRKLRILYANGNEIGRLsrgsfEGLESLVKLRldgnvlgalpdavfaplgnllYLHLESNRirflgkn 197
Cdd:cd21340  64 ---------LENLVNLKKLYLGGNRISVV-----EGLENLTNLE---------------------ELHIENQR------- 101

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 198 afsqlgklrflnLSANElqpSLrhaaTFVPlRSLSTLilsANSLQHlgprvfqhlprlglLSLSGNQLTHLAPeaFWGLE 277
Cdd:cd21340 102 ------------LPPGE---KL----TFDP-RSLAAL---SNSLRV--------------LNISGNNIDSLEP--LAPLR 142

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 37589211 278 ALRELRLEGNRLNQLP--LTLLEPLHSLEALDLSGNELSALH 317
Cdd:cd21340 143 NLEQLDASNNQISDLEelLDLLSSWPSLRELDLTGNPVCKKP 184
LRR_8 pfam13855
Leucine rich repeat;
229-289 3.56e-16

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 73.33  E-value: 3.56e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37589211   229 RSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRL 289
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 63-359 4.23e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 82.97  E-value: 4.23e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   63 TYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGN- 141
Cdd:PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNn 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  142 -------EIGRLSrgsfegleSLVKLRL-DGNVLGALPDAvFAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLSAN 213
Cdd:PLN00113 224 lsgeipyEIGGLT--------SLNHLDLvYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  214 ELQ---PSLrhaatFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLN 290
Cdd:PLN00113 295 SLSgeiPEL-----VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  291 -QLPLTLLEPLHsLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALYRLDLDGN 359
Cdd:PLN00113 370 gEIPEGLCSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
162-359 1.01e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 1.01e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 162 LDGNVLGALPDAVFAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLSANELQPSLRHAATFVPLRSLSTLILSANSL 241
Cdd:COG4886   5 LLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSL 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 242 QHLGPRVFQHLPRLGLLS-----------------LSGNQLTHLaPEAFWGLEALRELRLEGNRLNQLPLTLLEpLHSLE 304
Cdd:COG4886  85 LLLGLTDLGDLTNLTELDlsgneelsnltnlesldLSGNQLTDL-PEELANLTNLKELDLSNNQLTDLPEPLGN-LTNLK 162

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 37589211 305 ALDLSGNELSALhPATFGHQGRLRELSLRDNALSALSGDIfAASPALYRLDLDGN 359
Cdd:COG4886 163 SLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITDLPEPL-GNLTNLEELDLSGN 215
LRR_8 pfam13855
Leucine rich repeat;
84-143 6.39e-14

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 66.78  E-value: 6.39e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211    84 QLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEI 143
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 82-337 2.39e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 74.11  E-value: 2.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   82 LGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNeigRLSRGSFEGL---ESLV 158
Cdd:PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN---KFSGEIPKNLgkhNNLT 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  159 KLRLDGNVL-GALPDAVFAPlGNLLYLHLESN-----------------RIRfLGKNAFS--------QLGKLRFLNLSA 212
Cdd:PLN00113 360 VLDLSTNNLtGEIPEGLCSS-GNLFKLILFSNslegeipkslgacrslrRVR-LQDNSFSgelpseftKLPLVYFLDISN 437

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  213 NELQ----------PSLRHAA-----------TFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPE 271
Cdd:PLN00113 438 NNLQgrinsrkwdmPSLQMLSlarnkffgglpDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37589211  272 AFWGLEALRELRLEGNRLN-QLPLTLLEpLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNAL 337
Cdd:PLN00113 518 ELSSCKKLVSLDLSHNQLSgQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
LRR_8 pfam13855
Leucine rich repeat;
156-215 1.92e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 59.85  E-value: 1.92e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   156 SLVKLRLDGNVLGALPDAVFAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLSANEL 215
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
107-167 7.95e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 7.95e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37589211   107 SRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVL 167
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
65-119 1.07e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.84  E-value: 1.07e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 37589211    65 SLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLL 119
Cdd:pfam13855   7 DLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 83-295 3.55e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 60.63  E-value: 3.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   83 GQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAplrKLRILY----ANGNEIGRLSRGSFEgLESLV 158
Cdd:PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT---KLPLVYfldiSNNNLQGRINSRKWD-MPSLQ 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  159 KLRLDGN-VLGALPDAVFAPlgNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLSANELQPSLrhAATFVPLRSLSTLILS 237
Cdd:PLN00113 456 MLSLARNkFFGGLPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI--PDELSSCKKLVSLDLS 531

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 37589211  238 ANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLN-QLPLT 295
Cdd:PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHgSLPST 590
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 67-338 6.91e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 59.48  E-value: 6.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   67 GGNFITNITAFDFHrLGQLRRLDLQYNQIRSLHPKT-FEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYAN------ 139
Cdd:PLN00113  78 GKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNmlsgei 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  140 GNEIGRLSRGSFegleslvkLRLDGNVL-GALPDAVfAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLSANELQPS 218
Cdd:PLN00113 157 PNDIGSFSSLKV--------LDLGGNVLvGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  219 LRHAATfvPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLNQLPLTLLE 298
Cdd:PLN00113 228 IPYEIG--GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 37589211  299 PLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALS 338
Cdd:PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345
LRR_8 pfam13855
Leucine rich repeat;
204-265 1.24e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 51.76  E-value: 1.24e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 37589211   204 KLRFLNLSANELQpSLrHAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQL 265
Cdd:pfam13855   2 NLRSLDLSNNRLT-SL-DDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
302-359 1.34e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 51.76  E-value: 1.34e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 37589211   302 SLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALYRLDLDGN 359
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
279-337 1.63e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 51.37  E-value: 1.63e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 37589211   279 LRELRLEGNRLNQLPLTLLEPLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNAL 337
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 229-364 3.67e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 55.82  E-value: 3.67e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 229 RSLSTLILSANSLQHLGPRV------FQHLPRLGLLSLSGNQLTHLAPEAFWGL---EALRELRLEGNRLNQLPL----- 294
Cdd:cd00116  51 PSLKELCLSLNETGRIPRGLqsllqgLTKGCGLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLGDRGLrllak 130

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37589211 295 TLLEPLHSLEALDLSGNELSA--LHPA--TFGHQGRLRELSLRDNALS----ALSGDIFAASPALYRLDLDGNGWTCD 364
Cdd:cd00116 131 GLKDLPPALEKLVLGRNRLEGasCEALakALRANRDLKELNLANNGIGdagiRALAEGLKANCNLEVLDLNNNGLTDE 208
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 87-359 4.05e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 55.82  E-value: 4.05e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  87 RLDLQYNQIRSLHPKT-FEKLSRLEELYLGNNLLQAL----VPGTLAPLRKLRILYANGNEIGRLSRG---SFEGLESLV 158
Cdd:cd00116   2 QLSLKGELLKTERATElLPKLLCLQVLRLEGNTLGEEaakaLASALRPQPSLKELCLSLNETGRIPRGlqsLLQGLTKGC 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 159 KLR---LDGNVLGALPDAVFAPL---GNLLYLHLESNRI-----RFLGKNAFSQLGKLRFLNLSANEL--QPSLRHAATF 225
Cdd:cd00116  82 GLQeldLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLgdrglRLLAKGLKDLPPALEKLVLGRNRLegASCEALAKAL 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 226 VPLRSLSTLILSANSLQHLGPRV----FQHLPRLGLLSLSGNQLTHLapeafwGLEALRELrlegnrlnqlpltlLEPLH 301
Cdd:cd00116 162 RANRDLKELNLANNGIGDAGIRAlaegLKANCNLEVLDLNNNGLTDE------GASALAET--------------LASLK 221

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37589211 302 SLEALDLSGNEL-----SALHPATFGHQGRLRELSLRDNALSALSGDIFA----ASPALYRLDLDGN 359
Cdd:cd00116 222 SLEVLNLGDNNLtdagaAALASALLSPNISLLTLSLSCNDITDDGAKDLAevlaEKESLLELDLRGN 288
LRR_8 pfam13855
Leucine rich repeat;
131-191 6.97e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 49.83  E-value: 6.97e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37589211   131 RKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVLGALPDAVFAPLGNLLYLHLESNRI 191
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 22-313 8.98e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 54.67  E-value: 8.98e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  22 RAESVCPERCDCQHPQHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFdFHRLGQlrrldlqynqirslhpk 101
Cdd:cd00116  14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG-LQSLLQ----------------- 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 102 TFEKLSRLEELYLGNNLLQALVPGTLAPLRK---LRILYANGNEIGR-----LSRGSFEGLESLVKLRLDGNVLGALPDA 173
Cdd:cd00116  76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRsssLQELKLNNNGLGDrglrlLAKGLKDLPPALEKLVLGRNRLEGASCE 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 174 ----VFAPLGNLLYLHLESNRIRFLG----KNAFSQLGKLRFLNLSANELQP--SLRHAATFVPLRSLSTLILSANSL-- 241
Cdd:cd00116 156 alakALRANRDLKELNLANNGIGDAGiralAEGLKANCNLEVLDLNNNGLTDegASALAETLASLKSLEVLNLGDNNLtd 235

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 242 ---QHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGL----EALRELRLEGNRLN-----QLPLTLLEPLHSLEALDLS 309
Cdd:cd00116 236 agaAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVlaekESLLELDLRGNKFGeegaqLLAESLLEPGNELESLWVK 315


                ....
gi 37589211 310 GNEL 313
Cdd:cd00116 316 DDSF 319
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 11-194 3.71e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 49.66  E-value: 3.71e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  11 LVVCGCLAFPPRAESVCPERCdcqhpqhlLCTNRGLRAVPKTssLPSPQDVLTYSLGGNfitNITAFDFHRLGQ------ 84
Cdd:cd00116 127 LLAKGLKDLPPALEKLVLGRN--------RLEGASCEALAKA--LRANRDLKELNLANN---GIGDAGIRALAEglkanc 193

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  85 -LRRLDLQYNQIRSLHPK----TFEKLSRLEELYLGNNLL-----QALVPGTLAPLRKLRILYANGNEIGRLSRGSF-EG 153
Cdd:cd00116 194 nLEVLDLNNNGLTDEGASalaeTLASLKSLEVLNLGDNNLtdagaAALASALLSPNISLLTLSLSCNDITDDGAKDLaEV 273

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 37589211 154 L---ESLVKLRLDGNVLGALPDAVFAPLgnllyLHLESNRIRFL 194
Cdd:cd00116 274 LaekESLLELDLRGNKFGEEGAQLLAES-----LLEPGNELESL 312
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 151-364 1.57e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 47.74  E-value: 1.57e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 151 FEGLESLVKLRLDGNVLG-----ALPDAVFAPlGNLLYLHLESNRIRFLGKN------AFSQLGKLRFLNLSANELQPSL 219
Cdd:cd00116  19 LPKLLCLQVLRLEGNTLGeeaakALASALRPQ-PSLKELCLSLNETGRIPRGlqsllqGLTKGCGLQELDLSDNALGPDG 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 220 RHA-ATFVPLRSLSTLILSANSLQHLGPRVFQ-----HLPRLGLLSLSGNQLTH-----LApEAFWGLEALRELRLEGNR 288
Cdd:cd00116  98 CGVlESLLRSSSLQELKLNNNGLGDRGLRLLAkglkdLPPALEKLVLGRNRLEGasceaLA-KALRANRDLKELNLANNG 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 289 LNQLPLTLLEP----LHSLEALDLSGNEL-----SALhPATFGHQGRLRELSLRDNAL-----SALSGDIFAASPALYRL 354
Cdd:cd00116 177 IGDAGIRALAEglkaNCNLEVLDLNNNGLtdegaSAL-AETLASLKSLEVLNLGDNNLtdagaAALASALLSPNISLLTL 255

                       250
                ....*....|
gi 37589211 355 DLDGNGWTCD 364
Cdd:cd00116 256 SLSCNDITDD 265
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 79-368 3.31e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 47.09  E-value: 3.31e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  79 FHRLGQLRRLDLQYNQIR-----SLHPKTFEKLSRLEELYLGNN---------LLQALVPGTlaplrKLRILYANGNEIG 144
Cdd:COG5238 147 LKDPLGGNAVHLLGLAARlgllaAISMAKALQNNSVETVYLGCNqigdegieeLAEALTQNT-----TVTTLWLKRNPIG 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 145 RLSRGSF----EGLESLVKLRLDGNVLGalpDAVFAPLGNllylHLESNRirflgknafsqlgKLRFLNLSANEL--QPS 218
Cdd:COG5238 222 DEGAEILaealKGNKSLTTLDLSNNQIG---DEGVIALAE----ALKNNT-------------TVETLYLSGNQIgaEGA 281

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 219 LRHAATFVPLRSLSTLILSANSLQHLGPRVF----QHLPRLGLLSLSGNQLTHLAPEAFwgLEALRELRlegnrlnqlpl 294
Cdd:COG5238 282 IALAKALQGNTTLTSLDLSVNRIGDEGAIALaeglQGNKTLHTLNLAYNGIGAQGAIAL--AKALQENT----------- 348

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 295 tlleplhSLEALDLSGNELS-----ALHPATFGHQGrLRELSLRDNALSALSGDIFAAS---PALYRLDLDGNGWTCDCR 366
Cdd:COG5238 349 -------TLHSLDLSDNQIGdegaiALAKYLEGNTT-LRELNLGKNNIGKQGAEALIDAlqtNRLHTLILDGNLIGAEAQ 420


                ..
gi 37589211 367 LR 368
Cdd:COG5238 421 QR 422
PLN03150 PLN03150
hypothetical protein; Provisional
 258-338 1.52e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 45.19  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  258 LSLSGNQLTHLAPEAFWGLEALRELRLEGNRLN-QLPLTLlEPLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNA 336
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRgNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501


                 ..
gi 37589211  337 LS 338
Cdd:PLN03150 502 LS 503
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 84-122 2.49e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.15  E-value: 2.49e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 37589211    84 QLRRLDLQYNQIRSLHPktFEKLSRLEELYL-GNNLLQAL 122
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP--LAKLPNLETLDLsGNNKITDL 39
PLN03150 PLN03150
hypothetical protein; Provisional
 78-146 3.28e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 44.04  E-value: 3.28e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   78 DFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEI-GRL 146
Cdd:PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLsGRV 506
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 332-441 7.10e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.53  E-value: 7.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211    332 LRDNALSALSGDIFAASPALYRLDLDGNGWTCDCRLRGLKRWMGNWHSQGRLLTVfVQCRHPPALRGKYLdyLDDQLLQN 411
Cdd:TIGR00864    2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA-ALCAGPGALAGQPL--LGIPLLDS 78

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 37589211    412 G------SCVDPSPSPTAGSRQWPLP-TSSEEGMTPP 441
Cdd:TIGR00864   79 GcdeeyvACLKDNSSGGGAARSELVIfSAAHEGLFQP 115
LRR_9 pfam14580
Leucine-rich repeat;
228-307 7.28e-04

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 41.29  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   228 LRSLSTLILSANSLQHLGPrvFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLNQlpLTLLEPLHSLEALD 307
Cdd:pfam14580  41 LDQFDTIDFSDNEIRKLDG--FPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQE--LGDLDPLASLKKLT 116
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 78-181 1.17e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.53  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   78 DFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSRGSFEGLESL 157
Cdd:PLN00113 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

                         90       100
                 ....*....|....*....|....*
gi 37589211  158 VKLRLDGNVL-GALPdavfAPLGNL 181
Cdd:PLN00113 550 SQLDLSQNQLsGEIP----KNLGNV 570
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-56 1.92e-03

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 36.53  E-value: 1.92e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 37589211     27 CPERCDCqHPQHLLCTNRGLRAVPktSSLP 56
Cdd:smart00013   2 CPAPCNC-SGTAVDCSGRGLTEVP--LDLP 28
PLN03150 PLN03150
hypothetical protein; Provisional
 43-139 2.19e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   43 NRGLRA-VPktSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQA 121
Cdd:PLN03150 427 NQGLRGfIP--NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

                         90       100
                 ....*....|....*....|
gi 37589211  122 LVPGTLA--PLRKLRILYAN 139
Cdd:PLN03150 505 RVPAALGgrLLHRASFNFTD 524
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
208-376 2.39e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 41.07  E-value: 2.39e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 208 LNLSANELQPSLRHAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGN 287
Cdd:COG4886   3 LLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211 288 RLNQLPLTLLEPLHSLEALD-----------------LSGNELSALhPATFGHQGRLRELSLRDNALSALSGDIfAASPA 350
Cdd:COG4886  83 SLLLLGLTDLGDLTNLTELDlsgneelsnltnlesldLSGNQLTDL-PEELANLTNLKELDLSNNQLTDLPEPL-GNLTN 160

                       170       180
                ....*....|....*....|....*.
gi 37589211 351 LYRLDLDGNgwtcdcRLRGLKRWMGN 376
Cdd:COG4886 161 LKSLDLSNN------QLTDLPEELGN 180
fn3 pfam00041
Fibronectin type III domain;
587-665 2.69e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 37.39  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211   587 NLTVEAVSANSASVRWavrehRSPRPQGGA--RFRLLF-DRFGQQPKFQRFVylPERSDSATLHELRGDTPYLVCVEGVL 663
Cdd:pfam00041   5 NLTVTDVTSTSLTVSW-----TPPPDGNGPitGYEVEYrPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQAVN 77


                  ..
gi 37589211   664 GG 665
Cdd:pfam00041  78 GG 79
PLN03150 PLN03150
hypothetical protein; Provisional
 228-301 2.71e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 2.71e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37589211  228 LRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLN-QLPLTL-LEPLH 301
Cdd:PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSgRVPAALgGRLLH 516
LRRCT smart00082
Leucine rich repeat C-terminal domain;
359-406 4.05e-03

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 35.87  E-value: 4.05e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 37589211    359 NGWTCDCRLRGLKRW-MGNWHSQGRLLTVfvqCRHPPALRGKYLDYLDD 406
Cdd:smart00082   1 NPFICDCELRWLLRWlQANEHLQDPVDLR---CASPSSLRGPLLELLHS 46
PLN03150 PLN03150
hypothetical protein; Provisional
 184-276 5.02e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 40.18  E-value: 5.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37589211  184 LHLESNRIRFLGKNAFSQLGKLRFLNLSANELQPSLrhAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGN 263
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

                         90
                 ....*....|...
gi 37589211  264 QLTHLAPEAFWGL 276
Cdd:PLN03150 501 SLSGRVPAALGGR 513
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 587-659 5.13e-03

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 36.82  E-value: 5.13e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37589211    587 NLTVEAVSANSASVRWavrehRSPRPQGGARFRLLFDRFGQQPKFQ-RFVYLPERSDSATLHELRGDTPYLVCV 659
Cdd:smart00060   6 NLRVTDVTSTSVTLSW-----EPPPDDGITGYIVGYRVEYREEGSEwKEVNVTPSSTSYTLTGLKPGTEYEFRV 74
LRR smart00370
Leucine-rich repeats, outliers;
82-104 5.90e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.63  E-value: 5.90e-03
                           10        20
                   ....*....|....*....|...
gi 37589211     82 LGQLRRLDLQYNQIRSLHPKTFE 104
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQ 23
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
82-104 5.90e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 34.63  E-value: 5.90e-03
                           10        20
                   ....*....|....*....|...
gi 37589211     82 LGQLRRLDLQYNQIRSLHPKTFE 104
Cdd:smart00369   1 LPNLRELDLSNNQLSSLPPGAFQ 23
LRR smart00370
Leucine-rich repeats, outliers;
300-323 9.46e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 9.46e-03
                           10        20
                   ....*....|....*....|....
gi 37589211    300 LHSLEALDLSGNELSALHPATFGH 323
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
300-323 9.46e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 9.46e-03
                           10        20
                   ....*....|....*....|....
gi 37589211    300 LHSLEALDLSGNELSALHPATFGH 323
Cdd:smart00369   1 LPNLRELDLSNNQLSSLPPGAFQG 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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