|
Name |
Accession |
Description |
Interval |
E-value |
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1-1042 |
0e+00 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 1243.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 1 MKPMRLTLHNIGPFVGTHTVDFTALGPIFLVCGKTGSGKTTLFDAIAYALYGKpLGTRAEVIRSLRSHYAAPSEAAFATL 80
Cdd:TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGK-LPRRSEVIRSLNSLYAAPSEAAFAEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 81 EFSLGTKIYRVHRTLTCTLSHRKTEQPEQLYLEQKKGHGweRIACAHKSETECVIHDLLKLNSKEFERVVMLPQGECAQF 160
Cdd:TIGR00618 80 EFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRG--RILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 161 LKANSKEKKETLMNLFPVDQYT--ALMERAKKKSLHAKAVLETLRSQLETLCAECMPDTYHERKQTLEAELQHARDALQQ 238
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTqlALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 239 TRISHAYYTQKREALEAQLKKQQLCKELRARIETYRAQEPVHAETQKRIDRARKAAPLAAHIKHVTQCEQDAQRIHAEIQ 318
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 319 EKMRSREQLLMKRAAHVAQQSSIEEQRRLLQTLHSACIHIEDAHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQS 398
Cdd:TIGR00618 318 SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQS 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 399 LCKELDILQREAGTIDTRTSAFNDLQIQLAHAKKTQELSQRYAELCAAHATCTAQCEKLEKIHAQKSAYSTRAREQLLQT 478
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 479 KEQIHLQETRTHAVVLARLLEHQE-PCPVCGSCIHPNPARQDIDNLEPLTRRMQRIEQTYAQLETSEKDVYHILTSERER 557
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEePCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 558 RASYSAQMQEIQHSFSILTSCDTRSSCDIPNVQKITVRVLDLTEKLSRAKDMLACAQHALLRKKQPEQDLQDVRAHLQQC 637
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQC 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 638 SQELAKKETALHALQETLTQQRVRIHALSIR-LPKELLASNLLAPQKMQHEKESVAYWKEMLAHCQTLMRELHTHIEEYD 716
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVREHALSIRvLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYD 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 717 REFNEIENASSALGADIAAREDALNHVQKEYMHLARTVCCARTEAHFNNNEEVTAALMTDAELSHAAAEIQFFNELRAAD 796
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREED 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 797 THLLKTLEAEIGTEIPSDLDELNAQCHTLVKDEENFLSRIEILSATLHTLTHQYLKYEECSKQLAQKTQESAKLITLSDE 876
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 877 LNGINQKKIQFDAWALISFLHEITAYANIRLQKMSEGRYHLRVADSHVNARGYQGLALLVADAYTGSVRPSATLSGGETF 956
Cdd:TIGR00618 878 LNGINQIKIQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLALLVADAYTGSVRPSATLSGGETF 957
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 957 MASISLALGLADSIQTRsGGIVLDSLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVHELRTRIPHKILIKKTN 1036
Cdd:TIGR00618 958 LASLSLALALADLLSTS-GGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036
|
....*.
gi 3322922 1037 AGSHVM 1042
Cdd:TIGR00618 1037 AGSHVM 1042
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
945-1039 |
4.22e-40 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 147.42 E-value: 4.22e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 945 RPSATLSGGETFMASISLALGLADSIQTRsGGIVLDSLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVHELRT 1024
Cdd:cd03279 119 RPVSTLSGGETFLASLSLALALSEVLQNR-GGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKE 197
|
90
....*....|....*
gi 3322922 1025 RIPHKILIKKTNAGS 1039
Cdd:cd03279 198 RIPQRLEVIKTPGGS 212
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1-1036 |
1.48e-36 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 149.95 E-value: 1.48e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 1 MKPMRLTLHNIGPFVGTHTVDFT----ALGPIFLVCGKTGSGKTTLFDAIAYALYGKP--LGTRAEVIRSLRSHYAApse 74
Cdd:PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTaepfASNGLFAITGPTGAGKTTLLDAICLALYHETprLNNVSQSQNDLMTRDTA--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 75 AAFATLEFSLGTKIYRVHRTltctlSHRKTEQP----EQLYLEQKKGHGWERIACAHKSETEcVIHDLLKLNSKEFERVV 150
Cdd:PRK10246 78 ECLAEVEFEVKGEAYRAFWS-----QNRARNQPdgnlQAPRVELARCADGKILADKVKDKLE-LTATLTGLDYGRFTRSM 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 151 MLPQGECAQFLKANSKEKKETLMNLFPVDQYTALMERAKKKSLHAKAVLETLRSQLE--TLCAEcmpdtyhERKQTLEAE 228
Cdd:PRK10246 152 LLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASgvALLTP-------EQVQSLTAS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 229 LQHARD------ALQQTRISHAYYTQKREALEAQLKKQQLcKELRARIETYRAQEPVHAETQKRidRARKAAPL----AA 298
Cdd:PRK10246 225 LQVLTDeekqllTAQQQQQQSLNWLTRLDELQQEASRRQQ-ALQQALAAEEKAQPQLAALSLAQ--PARQLRPHweriQE 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 299 HIKHVTQCEQDAQRIHAEIQEKMRSREQllMKRAAHVAQQSSIEEQRRLLQTLHsacihiedAHDvatSIRDISCQAHTL 378
Cdd:PRK10246 302 QSAALAHTRQQIEEVNTRLQSTMALRAR--IRHHAAKQSAELQAQQQSLNTWLA--------EHD---RFRQWNNELAGW 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 379 TQHIHTLAQQKTTLTQQEQSLCKelDILQREAGTIDTRTSAFNDLQIQLAHAKKTQELSQRYAELCAAHATCTAQCEKLE 458
Cdd:PRK10246 369 RAQFSQQTSDREQLRQWQQQLTH--AEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQ 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 459 KIHAQKSAYSTRAREQLLQTKEQ-------------IHLQETRTHAVVLAR-LLEHQEPCPVCGSCIHPnpARQDIDNLE 524
Cdd:PRK10246 447 VAIQNVTQEQTQRNAALNEMRQRykektqqladvktICEQEARIKDLEAQRaQLQAGQPCPLCGSTSHP--AVEAYQALE 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 525 PLT--RRMQRIEQTYAQLETSEKDV---YHILTSERERRASYSAQMQEIQHSfsiLTScDTRSSCDIPNVQKITVRVLD- 598
Cdd:PRK10246 525 PGVnqSRLDALEKEVKKLGEEGAALrgqLDALTKQLQRDESEAQSLRQEEQA---LTQ-QWQAVCASLNITLQPQDDIQp 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 599 -LTEKLSRAKDMLACAQHALLRKKQPEQDLQDVRAHlQQCSQELAKKETALHALQETLTQQRVRIHALSIRLPKEllasn 677
Cdd:PRK10246 601 wLDAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQ-QQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEA----- 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 678 llapQKMQHEKESVAYWKEMLAHCQTLMRELHTHIEEYDRE-------FNEIENASSALGADIAAREDALNHVQKEYMHL 750
Cdd:PRK10246 675 ----QSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEetvaldnWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKA 750
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 751 ARTVCCARTEAHFNNNEEVTAALMTDAELSHAAAEIQFF-NELRAADTHLLKTLEAEI--------GTEIPSDLDELNAQ 821
Cdd:PRK10246 751 QAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLeNQRQQAQTLVTQTAQALAqhqqhrpdGLDLTVTVEQIQQE 830
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 822 CHTLVKD-EENFLSRIEIlsatlhtltHQYLKYEECSKQ----LAQKTQESAKLITLSDELNGI--NQKKIQFDAWALIS 894
Cdd:PRK10246 831 LAQLAQQlRENTTRQGEI---------RQQLKQDADNRQqqqaLMQQIAQATQQVEDWGYLNSLigSKEGDKFRKFAQGL 901
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 895 FLHEITAYANIRLQKMsEGRYHLRVADShvnargyQGLALLVADAYTG-SVRPSATLSGGETFMASISLALGLAD--SIQ 971
Cdd:PRK10246 902 TLDNLVWLANQQLTRL-HGRYLLQRKAS-------EALELEVVDTWQAdAVRDTRTLSGGESFLVSLALALALSDlvSHK 973
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3322922 972 TRsggivLDSLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVHELRTRIPHKILIKKTN 1036
Cdd:PRK10246 974 TR-----IDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKIN 1033
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
1-162 |
1.11e-32 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 126.23 E-value: 1.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 1 MKPMRLTLHNIGPFVGTHTVDFTALG--PIFLVCGKTGSGKTTLFDAIAYALYGKPLGTRAEviRSLRSHYAAPSEAAFA 78
Cdd:cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDnnGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQ--ENLRSVFAPGEDTAEV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 79 TLEFSLGTKIYRVHRTltctlshrkteqpeqlyleqkkghgweriacahksetecvihdlLKLNSKEFERVVMLPQGECA 158
Cdd:cd03279 79 SFTFQLGGKKYRVERS--------------------------------------------RGLDYDQFTRIVLLPQGEFD 114
|
....
gi 3322922 159 QFLK 162
Cdd:cd03279 115 RFLA 118
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-212 |
9.76e-25 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 103.17 E-value: 9.76e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 2 KPMRLTLHNIGPFVGTHTVDFTAlgPIFLVCGKTGSGKTTLFDAIAYALYGKplgtrAEVIRSLRSHYA-APSEAAFATL 80
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIDFDD--GLNLIVGPNGAGKSTILEAIRYALYGK-----ARSRSKLRSDLInVGSEEASVEL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 81 EFSLGTKIYRVHRtltctlshrkteqpeqlyleqkkghgweriacahksetecvihdllklnskefervvmlPQGECAQF 160
Cdd:COG0419 74 EFEHGGKRYRIER-----------------------------------------------------------RQGEFAEF 94
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 3322922 161 LKANSKEKKETLMNLFPVDQYTALMERAKKKSLHAKAVLETLRsQLETLCAE 212
Cdd:COG0419 95 LEAKPSERKEALKRLLGLEIYEELKERLKELEEALESALEELA-ELQKLKQE 145
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-205 |
1.55e-19 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 87.55 E-value: 1.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 6 LTLHNIGPFVGThTVDFTalGPIFLVCGKTGSGKTTLFDAIAYALYGKPLGTRAEVIRSLRSHYAA----PSEAAFATLE 81
Cdd:pfam13476 1 LTIENFRSFRDQ-TIDFS--KGLTLITGPNGSGKTTILDAIKLALYGKTSRLKRKSGGGFVKGDIRigleGKGKAYVEIT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 82 FSLGTKIYRVHRTLTCTLSHRKTEQPEQLYLEQKKGHGWERIacahksetecvIHDLLKLNSKEFERVVMLPQGECAQFL 161
Cdd:pfam13476 78 FENNDGRYTYAIERSRELSKKKGKTKKKEILEILEIDELQQF-----------ISELLKSDKIILPLLVFLGQEREEEFE 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 3322922 162 KANSKEKKETLMNLFPVDQYTALMERAKKKSLHAKAVLETLRSQ 205
Cdd:pfam13476 147 RKEKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELEELKEE 190
|
|
| DNA_S_dndD |
TIGR03185 |
DNA sulfur modification protein DndD; This model describes the DndB protein encoded by an ... |
6-499 |
3.00e-13 |
|
DNA sulfur modification protein DndD; This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification]
Pssm-ID: 274475 [Multi-domain] Cd Length: 650 Bit Score: 73.95 E-value: 3.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 6 LTLHNIGPFVGTHTVDFT--ALGPIFLVCGKTGSGKTTLFDAIAYALYGK---PLGTRAEV----IRSLRSHYAAPSEAA 76
Cdd:TIGR03185 6 LTLENFGPYRGRQTFDLSpsSPKPIILIGGLNGAGKTTLLDAIQLALYGKralCSGRGNKSyeqyLRGLINRQAGKTNPA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 77 FATLEFSLGTKIYRVHRTLTCTLSHRKTEQPEQL--YLEQKKGHGWERIACAHKSETECV-IHDLLKLNSKEFERVVmlP 153
Cdd:TIGR03185 86 SITLTFSVVEGGKRHEYTLVRSWHINNKDVKEKLtvYKDDEEDDSLNDIWDEFINELLPLeLADLFFFDGEKIEALA--N 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 154 QGECAQFLkansKEKKETLMNLFPVDQYTA---LMERAKKKSLHakavLETLRSQLETLCAECMPDTyhERKQTLEAELQ 230
Cdd:TIGR03185 164 PDRLASLL----KEAIEVLLGLDLIDRLAGdltNVLRRRKKSEL----PSSILSEIEALEAELKEQS--EKYEDLAQEIA 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 231 HARDALQQTRISHAYYTQKREALEAQLKKQqlckelRARIETYRAQEPVHAE--TQKRIDRARKAAPLA------AHIKH 302
Cdd:TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEGGDLFEE------REQLERQLKEIEAARKanRAQLRELAADPLPLLlipnllDSTKA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 303 VTQCEQDAQRIhAEIQEKMRSREQLLMKRAAHVAQQSSI--EEQRRLLQTLHSACIHIEDAHDVATSirdiscqahTLTQ 380
Cdd:TIGR03185 308 QLQKEEQSQQN-QLTQEELEERDKELLESLPKLALPAEHvkEIAAELAEIDKPATTDSEIPHRLSGS---------ELTQ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 381 HIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAfNDLQIQLAHAkkTQELSQRYAELCAAHATCTAQCEKLEKI 460
Cdd:TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST-IPSEEQIAQL--LEELGEAQNELFRSEAEIEELLRQLETL 454
|
490 500 510
....*....|....*....|....*....|....*....
gi 3322922 461 HAQKSAYSTRAREQLLQTKEQIHLQETRTHAVVLARLLE 499
Cdd:TIGR03185 455 KEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLK 493
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
944-1038 |
4.90e-12 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 66.09 E-value: 4.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 944 VRPSATLSGGETFMASISLALGLADSIqtrsgGIVLDSLFIDEGFGSLDEASLDKAI-GILDEIREGS-RMIGIISHVHE 1021
Cdd:cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETF-----GSNCGILALDEPTTNLDEENIEESLaEIIEERKSQKnFQLIVITHDEE 184
|
90
....*....|....*..
gi 3322922 1022 LRTRIPHKILIKKTNAG 1038
Cdd:cd03240 185 LVDAADHIYRVEKDGRQ 201
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
5-95 |
5.15e-09 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 57.23 E-value: 5.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 5 RLTLHNIGPFVGTHTVDFTalGPIFLVCGKTGSGKTTLFDAIAYALYG-KPLGTRAEVirSLRSHYAAPSEAAFATLEFS 83
Cdd:cd03240 3 KLSIRNIRSFHERSEIEFF--SPLTLIVGQNGAGKTTIIEALKYALTGeLPPNSKGGA--HDPKLIREGEVRAQVKLAFE 78
|
90
....*....|...
gi 3322922 84 LGTKI-YRVHRTL 95
Cdd:cd03240 79 NANGKkYTITRSL 91
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
927-1005 |
1.28e-08 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 53.01 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 927 RGYQGLALLVADAyTGSV----RPSATLSGGET-FMASISLALGLADSIQTRSG-GIVLDSLFIDEGFGSLDEASLDKAI 1000
Cdd:pfam13558 7 RNWLSFEVEVRDE-DGSEvetyRRSGGLSGGEKqLLAYLPLAAALAAQYGSAEGrPPAPRLVFLDEAFAKLDEENIRTAL 85
|
....*
gi 3322922 1001 GILDE 1005
Cdd:pfam13558 86 ELLRA 90
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
5-492 |
1.80e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 5 RLTLHNIGPFVGTHTV----DFTAlgpiflVCGKTGSGKTTLFDAIAYALYGKPL-GTRAEVIRSLRSHYAAPSEAAFAT 79
Cdd:TIGR02169 4 RIELENFKSFGKKKVIpfskGFTV------ISGPNGSGKSNIGDAILFALGLSSSkAMRAERLSDLISNGKNGQSGNEAY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 80 LEFSLGTKIYRVHRTLTCTLSHRKTEQPEQLYLeqkkghgweriACAHKSETECVIHDLLKLNSKEFE--RVVMlpQGEC 157
Cdd:TIGR02169 78 VTVTFKNDDGKFPDELEVVRRLKVTDDGKYSYY-----------YLNGQRVRLSEIHDFLAAAGIYPEgyNVVL--QGDV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 158 AQFLKANSKEKKETLMNLFPVDQYTALMERA-------KKKSLHAKAVLETLRSQLETLCAEcmpDTYHERKQTLEAELQ 230
Cdd:TIGR02169 145 TDFISMSPVERRKIIDEIAGVAEFDRKKEKAleeleevEENIERLDLIIDEKRQQLERLRRE---REKAERYQALLKEKR 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 231 HARdalqQTRISHAYYT--QKREALEAQL-----KKQQLCKELRARIETYRAQEPVHAETQKRIDRA---------RKAA 294
Cdd:TIGR02169 222 EYE----GYELLKEKEAleRQKEAIERQLasleeELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvkEKIG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 295 PLAAHIKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQ-QSSIEEQRRLLQTLHSACIHIEDAHDVATS-IRDIS 372
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEElEREIEEERKRRDKLTEEYAELKEELEDLRAeLEEVD 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 373 CQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSafnDLQIQLAHAKktQELSQRYAELCAAHATCTA 452
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA---DLNAAIAGIE--AKINELEEEKEDKALEIKK 452
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 3322922 453 QCEKLEKIHAQKSAYstraREQLLQTKEQIHLQETRTHAV 492
Cdd:TIGR02169 453 QEWKLEQLAADLSKY----EQELYDLKEEYDRVEKELSKL 488
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1-547 |
2.00e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 1 MKPMRLTLHNIGPFVGThtvDFTALGPIFLVCGKTGSGKTTLFDAIAYALYG-KPL-GTRAEVIrslrshyAAPSEAAFA 78
Cdd:PRK02224 1 MRFDRVRLENFKCYADA---DLRLEDGVTVIHGVNGSGKSSLLEACFFALYGsKALdDTLDDVI-------TIGAEEAEI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 79 TLEFSLGTKIYRVHR----------TLTCTLshrktEQPEqlyleqkkghgwERIACAHKSETEcvIHDLLKLNSKEFER 148
Cdd:PRK02224 71 ELWFEHAGGEYHIERrvrlsgdratTAKCVL-----ETPE------------GTIDGARDVREE--VTELLRMDAEAFVN 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 149 VVMLPQGECAQFLKANSKEKKETLMNLFPVDQYTALMERAKKKSLHAKAVLETLRSQLETLCAECM---PDTYHERKQTL 225
Cdd:PRK02224 132 CAYVRQGEVNKLINATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEekeEKDLHERLNGL 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 226 EAELQHARDALQQtrishayYTQKREALEAQLkkqqlcKELRARIETYRaqepvhaETQKRIDRarkaapLAAHIKH--- 302
Cdd:PRK02224 212 ESELAELDEEIER-------YEEQREQARETR------DEADEVLEEHE-------ERREELET------LEAEIEDlre 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 303 -VTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQ-------QSSIEEQRRLLQTLHSACihIEDAHDVATSIRDISCQ 374
Cdd:PRK02224 266 tIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEEL--RDRLEECRVAAQAHNEE 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 375 AHTLTQHIHTLAQQKTTLTQQEQSLCKEldiLQREAGTIDTRTSAFNDLQIQLahakktQELSQRYAELcaahatcTAQC 454
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELESE---LEEAREAVEDRREEIEELEEEI------EELRERFGDA-------PVDL 407
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 455 EKLEKIHAQKSAYSTRAREQLLQTKEQIhlqETRTHAVVLARLLEHQEPCPVCGSCIHPNParqDIDNLEPLTRRMQRIE 534
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATL---RTARERVEEAEALLEAGKCPECGQPVEGSP---HVETIEEDRERVEELE 481
|
570
....*....|...
gi 3322922 535 QTYAQLETSEKDV 547
Cdd:PRK02224 482 AELEDLEEEVEEV 494
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
380-1022 |
3.36e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 3.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 380 QHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDLQIQLAHAKKTQELSQRYAELCAAHATCTAQCEKLEK 459
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 460 IHAQKSAYST------RAREQLLQTKEQIHLQETRTHAVVLARLLEHQEpcpvcgsciHPNPARQDIDNLEP-LTRRMQR 532
Cdd:COG4717 151 LEERLEELREleeeleELEAELAELQEELEELLEQLSLATEEELQDLAE---------ELEELQQRLAELEEeLEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 533 IEQTYAQLETSEKDVYHILTSERERRASYSAQMQEIQHSFSILTSCDTRSSCDIPNVQKITVRVLdlteklsrakdmLAC 612
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL------------ALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 613 AQHALLRKKQPEQDLQDVRAHlqqcsqelakketalhALQETLTQQRVRIHALSIRLPKELlasnllapqkmqhEKESVA 692
Cdd:COG4717 290 FLLLAREKASLGKEAEELQAL----------------PALEELEEEELEELLAALGLPPDL-------------SPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 693 YWKEMLAHCQTLMRELHTHIEEYDREFNEIENASSALGADIAAREDALNHVQ--KEYMHLARTVccARTEAHFNNNEEVT 770
Cdd:COG4717 341 ELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaEEYQELKEEL--EELEEQLEELLGEL 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 771 AALMTDAELSHAAAEIQFFNELRAADTHLLKTLEAEIGteipsdldELNAQCHTLVKDEE--NFLSRIEILSATLHTLTH 848
Cdd:COG4717 419 EELLEALDEEELEEELEELEEELEELEEELEELREELA--------ELEAELEQLEEDGElaELLQELEELKAELRELAE 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 849 QYLKYEeCSKQLAQKTQESAKLitlsdelnginqkkiqfdawaliSFLHEITAYANIRLQKMSEGRYHLRVADSHVNarg 928
Cdd:COG4717 491 EWAALK-LALELLEEAREEYRE-----------------------ERLPPVLERASEYFSRLTDGRYRLIRIDEDLS--- 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 929 yqglalLVADAYTGSVRPSATLSGGETFMASISLALGLADSIQTRSGgivldSLFIDEGFGSLDEASLDKAIGILDEIRE 1008
Cdd:COG4717 544 ------LKVDTEDGRTRPVEELSRGTREQLYLALRLALAELLAGEPL-----PLILDDAFVNFDDERLRAALELLAELAK 612
|
650
....*....|....
gi 3322922 1009 GSRMIGIISHVHEL 1022
Cdd:COG4717 613 GRQVIYFTCHEELV 626
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
1-66 |
4.15e-08 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 55.77 E-value: 4.15e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3322922 1 MKPMRLTLHNIGPFvGTHTVDFTALGPIFLVCGKTGSGKTTLFDAIAYALYGKPLGTRAEVIRSLR 66
Cdd:COG3950 1 MRIKSLTIENFRGF-EDLEIDFDNPPRLTVLVGENGSGKTTLLEAIALALSGLLSRLDDVKFRKLL 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-502 |
7.32e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 7.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 198 VLETLRSQLETL-----CAEcmpdTYHE---RKQTLEAELQHARDALQQTRIshAYYTQKREALEAQLKKQQL-CKELRA 268
Cdd:COG1196 194 ILGELERQLEPLerqaeKAE----RYRElkeELKELEAELLLLKLRELEAEL--EELEAELEELEAELEELEAeLAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 269 RIETYRAQepvHAETQKRIDRARKAapLAAHIKHVTQCEQD----AQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQ 344
Cdd:COG1196 268 ELEELRLE---LEELELELEEAQAE--EYELLAELARLEQDiarlEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 345 RRLLQTLHSACIHIEDA-HDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDL 423
Cdd:COG1196 343 EEELEEAEEELEEAEAElAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3322922 424 QIQLAhAKKTQELSQRYAELCAAHATCTAQCEKLEKIHAQKSAYSTRAREQLLQTKEQIHLQETRTHAVVLARLLEHQE 502
Cdd:COG1196 423 LEELE-EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
180-486 |
7.51e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 7.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 180 QYTALMERAKKKSL--------HAKAVLETLRSQLETLcaecmpdtyHERKQTLEAELQHARDALQQTRISHAyytQKRE 251
Cdd:COG1196 214 RYRELKEELKELEAellllklrELEAELEELEAELEEL---------EAELEELEAELAELEAELEELRLELE---ELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 252 ALEAQLKKQQlckELRARIETYRAQEpvHAETQKRIDRARKAAPLAAhikhvtQCEQDAQRIHAEIQEKMRSREQLLMKR 331
Cdd:COG1196 282 ELEEAQAEEY---ELLAELARLEQDI--ARLEERRRELEERLEELEE------ELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 332 AAHVAQQSSIEEQRRLLQTLHSACIHIEDAHDVATSirdiscQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAG 411
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAE------ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3322922 412 TIDTRTSAfnDLQIQLAHAKKTQELSQRYAELCAAHATCTAQCEKLEKIHAQKSAYSTRAREQLLQTKEQIHLQE 486
Cdd:COG1196 425 ELEEALAE--LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
946-1019 |
1.31e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 50.39 E-value: 1.31e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3322922 946 PSATLSGGETfmasisLALGLADSIqtrsggivldSLFIDegFGSLDEASLDKAIGILDEIRegsrmigIISHV 1019
Cdd:COG0419 155 PIETLSGGER------LRLALADLL----------SLILD--FGSLDEERLERLLDALEELA-------IITHV 203
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-665 |
1.39e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 225 LEAELQHARDAL-----QQTRISHAYYTQKREALEAQLKKQQLCKELRARIETYRAQepvHAETQKRIDRARKAAPLAAH 299
Cdd:COG4717 47 LLERLEKEADELfkpqgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEE---LEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 300 IKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQRRLLQTLHSACIHIEDAHDVATSirdiscqahtlt 379
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE------------ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 380 QHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDLQIQLAHAKKTQELSQRY---AELCAAHATCTAQCEK 456
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLliaAALLALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 457 LEKIH-AQKSAYSTRAREQLLQTKEQIHLQETRTHAVVLARL--LEHQEPCPVCGSciHPNPARQDIDNLEPLTRRMQRI 533
Cdd:COG4717 272 ILTIAgVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALeeLEEEELEELLAA--LGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 534 EQTYAQLEtsekdvyhiltsERERRASYSAQMQEIQhsfSILTSCDTRSSCDIPNVQKITVRVLDLTEKLSRAKDMLAcA 613
Cdd:COG4717 350 QELLREAE------------ELEEELQLEELEQEIA---ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE-E 413
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 3322922 614 QHALLRKKQPEQDLQDVRAHLQQCSQELAKKETALHALQETLTQQRVRIHAL 665
Cdd:COG4717 414 LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
5-52 |
6.11e-06 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 44.51 E-value: 6.11e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 3322922 5 RLTLHNIGPFVGtHTVDFTALGpIFLVCGKTGSGKTTLFDAIAYALYG 52
Cdd:pfam13555 3 RLQLINWGTFDG-HTIPIDPRG-NTLLTGPSGSGKSTLLDAIQTLLVP 48
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
5-409 |
6.79e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 5 RLTLHNIGPFVGTHTVDFTalGPIFLVCGKTGSGKTTLFDAIAYALYG--KPL------GTRAEViRSLRS----HYAAP 72
Cdd:COG4913 5 RLQLINWGTFDGVHTIDFD--GRGTLLTGDNGSGKSTLLDAIQTLLVPakRPRfnkaanDAGKSD-RTLLSyvrgKYGSE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 73 SEAAFATLEFSLGTKIYRV----------HRTLT------CTLSHRKTEQPEQLYLeqkkghgwerIAcahksETECVIH 136
Cdd:COG4913 82 RDEAGTRPVYLRPGDTWSAiaatfandgsGQTVTlaqvfwLKGDASSLGDVKRFFV----------IA-----DGPLDLE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 137 DLLK----LNSKEFERvvMLPQGECAQFlkaNSKEK-KETLMNLFPVDQYTALmerakkkSLHAKAV-LETLRSqLETLC 210
Cdd:COG4913 147 DFEEfahgFDIRALKA--RLKKQGVEFF---DSFSAyLARLRRRLGIGSEKAL-------RLLHKTQsFKPIGD-LDDFV 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 211 AECM---PDTYHERKQTLE--AELQHARDALQQTRishayytQKREALE----------AQLKKQQLCKELRARIETYRA 275
Cdd:COG4913 214 REYMleePDTFEAADALVEhfDDLERAHEALEDAR-------EQIELLEpirelaeryaAARERLAELEYLRAALRLWFA 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 276 QEPVH----AETQKRIDRARKAAPLAAHIKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVaqQSSIEEQRRLLQTL 351
Cdd:COG4913 287 QRRLElleaELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERL--ERELEERERRRARL 364
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 3322922 352 HSACIHIE-----DAHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQRE 409
Cdd:COG4913 365 EALLAALGlplpaSAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
28-256 |
1.03e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.51 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 28 IFLVCGKTGSGKTTLFDAIAYALYGKplgTRAEVIRSLRSHYAAPSEaafATLEFSLGTKIYRVHRTLTctlshRKTEQP 107
Cdd:PRK01156 25 INIITGKNGAGKSSIVDAIRFALFTD---KRTEKIEDMIKKGKNNLE---VELEFRIGGHVYQIRRSIE-----RRGKGS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 108 EQLYLEQKKGhgwERIACAHKSETECVIHDLLKLNSKEFERVVMLPQGECAQFLKANSKEKKETLMNLFPVDqytalmeR 187
Cdd:PRK01156 94 RREAYIKKDG---SIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEIN-------S 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3322922 188 AKKKSLHAKAVLETLRSQLETLcaecmpDTYHERKQTLEAELQHARDALQQTRISHAYYTQKREALEAQ 256
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNI------DYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIE 226
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-502 |
1.31e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 218 YHERKQTLEAELQHARDALqqTRISHAYYTQKR--EALEAQLKKQQLCKELRARIETYRAQEPVH---------AETQKR 286
Cdd:COG1196 170 YKERKEEAERKLEATEENL--ERLEDILGELERqlEPLERQAEKAERYRELKEELKELEAELLLLklreleaelEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 287 IDRARKAapLAAHIKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQRRLLQtlhsacihiEDAHDVAT 366
Cdd:COG1196 248 LEELEAE--LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE---------ERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 367 SIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAgtIDTRTSAFNDLQIQLAHAKKTQELSQRYAELCAA 446
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL--AEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 3322922 447 HATCTAQCEKLEKIHAQKsaysTRAREQLLQTKEQIHLQETRTHAVVLARLLEHQE 502
Cdd:COG1196 395 AAELAAQLEELEEAEEAL----LERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
18-496 |
2.70e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 18 HTVDFtaLGPIFLVCGKTGSGKTTLFDAIAYALYGK-PLGTRAEVIRSLRSHYAAPSEAAFATLEF-SLGTKIYRVHRTL 95
Cdd:TIGR00606 22 QIIDF--FSPLTILVGPNGAGKTTIIECLKYICTGDfPPGTKGNTFVHDPKVAQETDVRAQIRLQFrDVNGEECAVVRSM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 96 TCTLSHRKTEQPEQLYLEQKKGHGWERIACAHKSETECVIHDLLKLNSKEFERVVMLPQgECAQFLKANSKEKKETLMNL 175
Cdd:TIGR00606 100 VCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQ-EDSNWPLSEGKALKQKFDEI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 176 FPVDQYTALMERAKKKSLHAKAVLETLRSQLETLcaecmpDTYHERKQTLEAELQHARDALQQTRISHAYYTQKREALEA 255
Cdd:TIGR00606 179 FSATRYIKALETLRQVRQTQGQKVQEHQMELKYL------KQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKN 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 256 QLKK-------------------------QQLCKELRARIE-------------------TYRAQEPVHAETQKRIDRAR 291
Cdd:TIGR00606 253 RLKEiehnlskimkldneikalksrkkqmEKDNSELELKMEkvfqgtdeqlndlyhnhqrTVREKERELVDCQRELEKLN 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 292 KAAPLAAHIKHVTQCEQDAQRIHAE-IQEKMRSREQLLMKRAAHVaqqssieeqrRLLQTLHSACIHIEDAHDVATSIRD 370
Cdd:TIGR00606 333 KERRLLNQEKTELLVEQGRLQLQADrHQEHIRARDSLIQSLATRL----------ELDGFERGPFSERQIKNFHTLVIER 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 371 ISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQReagTIDTRTSAFNDLQIQLAHA---------------KKTQE 435
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR---TIELKKEILEKKQEELKFVikelqqlegssdrilELDQE 479
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 3322922 436 LSQRYAELCAAHATCTAQCEKLEKIHAQ-KSAYSTRAREQLLQTKEQI-HLQETRTHAVVLAR 496
Cdd:TIGR00606 480 LRKAERELSKAEKNSLTETLKKEVKSLQnEKADLDRKLRKLDQEMEQLnHHTTTRTQMEMLTK 542
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
182-458 |
3.27e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 182 TALMERAKKKSLHAKAVLETLRSQLETLcaecmpdtyHERKQTLEAELQHARDALQQTRISHAYYTQKREALEAQLKKQQ 261
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEEL---------EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 262 L-CKELRARIETYRAQepvhaetqkridRARKAAPLAAHIKHVTQCEQDAQRIHAEIQEkmrSREQLLMKRAAHVAQQSS 340
Cdd:TIGR02168 754 KeLTELEAEIEELEER------------LEEAEEELAEAEAEIEELEAQIEQLKEELKA---LREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 341 IEEQRRLLQTLHsacihiEDAHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAF 420
Cdd:TIGR02168 819 AANLRERLESLE------RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 3322922 421 NDLQIQLA-----HAKKTQELSQRYAELCAAHATCTAQCEKLE 458
Cdd:TIGR02168 893 RSELEELSeelreLESKRSELRRELEELREKLAQLELRLEGLE 935
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
950-1040 |
4.02e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.04 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 950 LSGGETFMASISLALGLADSIQTrsggivlDSLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVHELRTRIPHK 1029
Cdd:cd03227 78 LSGGEKELSALALILALASLKPR-------PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKL 150
|
90
....*....|.
gi 3322922 1030 ILIKKTNAGSH 1040
Cdd:cd03227 151 IHIKKVITGVY 161
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-718 |
6.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 310 AQRIHAEIQEKMRSREQLlmkraahvaqqssIEEQRRLLQTLHSACIHIEDAHDvatSIRDISCQAHTLTQHIHTLAQQK 389
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSL-------------QSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 390 TTLTQQEQSLCKEL----DILQREAGTIDTRTSAFNDLQIQLAhakktqELSQRYAElcAAHATCTAQCEKLEKIHA--Q 463
Cdd:TIGR02169 740 EELEEDLSSLEQEIenvkSELKELEARIEELEEDLHKLEEALN------DLEARLSH--SRIPEIQAELSKLEEEVSriE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 464 KSAYSTRAREQLLQTKEQIhLQETRTHAVVLARLLEHQEpcpvcgscihpNPARQDIDNLEPLTRRM-QRIEQTYAQLET 542
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQI-----------KSIEKEIENLNGKKEELeEELEELEAALRD 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 543 SEKDVYHILTSERERRASYSAQMQEIQHSFSiltscdtrsscdipNVQKITVRVLDLTEKLSRAKDMLAcaqhALLRKKQ 622
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEELEA--------------QIEKKRKRLSELKAKLEALEEELS----EIEDPKG 941
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 623 PEQDLQDVRAHLQQCSQELAKKETALHALQETltqqrvrihalsirlpkellasNLLAPQKMqheKESVAYWKEMLAHCQ 702
Cdd:TIGR02169 942 EDEEIPEEELSLEDVQAELQRVEEEIRALEPV----------------------NMLAIQEY---EEVLKRLDELKEKRA 996
|
410
....*....|....*....
gi 3322922 703 TLMRE---LHTHIEEYDRE 718
Cdd:TIGR02169 997 KLEEErkaILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
220-466 |
7.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 220 ERKQTLEAELQHARDALQQTRISHAYYTQKREALEAQLKKQQlcKELRARIETYRAQEPVHAETQKRIDRARKAAplaah 299
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE--RRIAALARRIRALEQELAALEAELAELEKEI----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 300 ikhvtqceqdaqrihAEIQEKMRSREQLLMKRAAhVAQQSSIEEQRRLLQTLHSACIHIEDAHDVATSIRDISCQAHTLT 379
Cdd:COG4942 93 ---------------AELRAELEAQKEELAELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 380 QHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDLQIQLahAKKTQELSQRYAELCAAHATCTAQCEKLEK 459
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL--EKELAELAAELAELQQEAEELEALIARLEA 234
|
....*..
gi 3322922 460 IHAQKSA 466
Cdd:COG4942 235 EAAAAAE 241
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
950-1032 |
1.90e-04 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 43.00 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 950 LSGGETFMASISLALGLADSIqtrsggivldsLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVHELRTRIPHK 1029
Cdd:cd00267 81 LSGGQRQRVALARALLLNPDL-----------LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADR 149
|
...
gi 3322922 1030 ILI 1032
Cdd:cd00267 150 VIV 152
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-439 |
6.17e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 186 ERAKKKSLHAKAVLETLRSQLETLCAECMPDTyhERKQTLEAELQHARDALQQTRISHAYYTQKREALEAQLKKQQlcKE 265
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLE--ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE--EE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 266 LRARIETYRAQEpvHAETQKRIDRARKAAPLAAHIKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQR 345
Cdd:COG1196 353 LEEAEAELAEAE--EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 346 RLLQTLhsaciHIEDAHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDLQI 425
Cdd:COG1196 431 AELEEE-----EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
250
....*....|....
gi 3322922 426 QLAHAKKTQELSQR 439
Cdd:COG1196 506 FLEGVKAALLLAGL 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
517-836 |
6.33e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 517 RQDIDNLEpltRRMQRIEQTYAQLETSEKDVYHILTSERERRASYSAQMQEIQHSFSILTSCDTRSSCDIPNVQK----I 592
Cdd:TIGR02168 676 RREIEELE---EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriaqL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 593 TVRVLDLTEKLSRAKDMLACAQHALlrkKQPEQDLQDVRAHLQQCSQELAKKETALHALQETLTQQRVRIHALSIRLpkE 672
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEEL---AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL--E 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 673 LLASNLLAPQKMQheKESVAYWKEMLAHCQTLMRElhthIEEYDREFNEIENASSALGADIAAREDALNHVQKEYMHLAR 752
Cdd:TIGR02168 828 SLERRIAATERRL--EDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 753 TVCCARTEAHFNNNE-EVTAALMTDAELSHAAAEIQfFNELRAADTHLLKTLEAEIGTEiPSDLDELNAQCHTLVKDEEN 831
Cdd:TIGR02168 902 ELRELESKRSELRRElEELREKLAQLELRLEGLEVR-IDNLQERLSEEYSLTLEEAEAL-ENKIEDDEEEARRRLKRLEN 979
|
....*
gi 3322922 832 FLSRI 836
Cdd:TIGR02168 980 KIKEL 984
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
207-416 |
8.05e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 207 ETLC--AECMPDTYHERKQTLEAELQHA----RDALQQTRISHAYYTQKREALEA--------------QLKKQQLC--- 263
Cdd:COG3096 426 RALCglPDLTPENAEDYLAAFRAKEQQAteevLELEQKLSVADAARRQFEKAYELvckiageversqawQTARELLRryr 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 264 --KELRARIETYRAQepvHAETQKRIDRARKAAPLAAHI-KHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSS 340
Cdd:COG3096 506 sqQALAQRLQQLRAQ---LAELEQRLRQQQNAERLLEEFcQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSE 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 341 IEEQRRLLQTLHSACIHIE----DAHDVATSIRDISCQA----HTLTQHIHTLAQQKTTLT-------QQEQSLCKELDI 405
Cdd:COG3096 583 LRQQLEQLRARIKELAARApawlAAQDALERLREQSGEAladsQEVTAAMQQLLEREREATverdelaARKQALESQIER 662
|
250
....*....|.
gi 3322922 406 LQREAGTIDTR 416
Cdd:COG3096 663 LSQPGGAEDPR 673
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
188-500 |
9.14e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 188 AKKKSLHAKAVLETLRSQLETLcaecmpdtyHERKQTLEAELQHARDAL--------QQTRISHayYTQKREALEAQLKK 259
Cdd:COG3096 297 ARRQLAEEQYRLVEMARELEEL---------SARESDLEQDYQAASDHLnlvqtalrQQEKIER--YQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 260 QQLCKE------LRARIETYRAQEPVH------AETQKRID-----------------RARKAAPLAA-HIKHVTQCEQD 309
Cdd:COG3096 366 QEEVVEeaaeqlAEAEARLEAAEEEVDslksqlADYQQALDvqqtraiqyqqavqaleKARALCGLPDlTPENAEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 310 AQRIHAEIQEKMRSREQLLMKRAAHVAQqssIEEQRRLLQTLHSAcIHIEDAHDVATS-IRDISCQAHtLTQHIHTLAQQ 388
Cdd:COG3096 446 FRAKEQQATEEVLELEQKLSVADAARRQ---FEKAYELVCKIAGE-VERSQAWQTARElLRRYRSQQA-LAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 389 KTTLTQQEQSLCKELDILQREAGTIDTRTSAFNDLQIQLAHAKKTQE-LSQRYAELCAAHATCTAQcekLEKIHAQKSAY 467
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEeLEEQAAEAVEQRSELRQQ---LEQLRARIKEL 597
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 3322922 468 STRA------REQLLQTKEQIHLQETRTHAVV--LARLLEH 500
Cdd:COG3096 598 AARApawlaaQDALERLREQSGEALADSQEVTaaMQQLLER 638
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
220-365 |
1.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 220 ERKQTLEAELQHARDALQQTRishayytQKREALEAQLKKQQLCKELRARIETYRAQEPVHAETQKRIDR--ARKAAPLA 297
Cdd:COG4913 610 AKLAALEAELAELEEELAEAE-------ERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEleAELERLDA 682
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 3322922 298 AHIKhVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQRRLLQTLHSACIHIEDAHDVA 365
Cdd:COG4913 683 SSDD-LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
186-349 |
1.04e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 186 ERAKKKSLHAKAVLETLRSQLETLCAECMPDTYHERKQTLEAElQHARDALQQTRISHAYYTQKREALEAQLKKQQLCK- 264
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKa 1512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 265 -ELRARIETYRAQEPVHAETQKRIDRARKAAPL--AAHIKHVTQCEQDAQRIHAEIQEKMRSREQLLMKRA--AHVAQQS 339
Cdd:PTZ00121 1513 dEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAeeAKKAEEA 1592
|
170
....*....|
gi 3322922 340 SIEEQRRLLQ 349
Cdd:PTZ00121 1593 RIEEVMKLYE 1602
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
30-152 |
1.80e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 30 LVCGKTGSGKTTLFDAIAYALYGKPLG--TRAEVIRSLRshyaapSEAAFATLEFSLGTKIYRVHR-------TLTCT-- 98
Cdd:PHA02562 31 LITGKNGAGKSTMLEALTFALFGKPFRdiKKGQLINSIN------KKDLLVELWFEYGEKEYYIKRgikpnvfEIYCNgk 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 3322922 99 -LSHRKTEQPEQLYLEQkkghgweriacahksetecvihdLLKLNSKEFERVVML 152
Cdd:PHA02562 105 lLDESASSKDFQKYFEQ-----------------------MLGMNYKSFKQIVVL 136
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-862 |
3.66e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 218 YHERKQTLEAELQHARDALQQ--------------------------------TRISHAYYT-------QKREALEAQLK 258
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRledilnelerqlkslerqaekaerykelkaelRELELALLVlrleelrEELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 259 K-QQLCKELRARIETYRAQ----EPVHAETQKRIDRARKA--------APLAAHIKH----VTQCEQDAQRIHAEIQEKM 321
Cdd:TIGR02168 250 EaEEELEELTAELQELEEKleelRLEVSELEEEIEELQKElyalaneiSRLEQQKQIlrerLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 322 RSR-----------EQLLMKRAAHVAQQSSIEEQRRLLQTLHSACIHIEDAHD-VATSIRDISCQAHTLTQHIHTLAQQK 389
Cdd:TIGR02168 330 SKLdelaeelaeleEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 390 TTLTQQEQSLCKELDILQREAgtidtRTSAFNDLQIQLAHAKKTQE-LSQRYAELCAAHATCTAQCEKLEKI--HAQKSA 466
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKL-----EEAELKELQAELEELEEELEeLQEELERLEEALEELREELEEAEQAldAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 467 YSTRAREQLLQTKEQIHLQETRTHAVVLARLLEHQEPCPVCGSCIHP------------------------NPARQDIDN 522
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaieaalggrlqavvvenlNAAKKAIAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 523 LEP--LTRRM---------QRIEQTYAQLETSEKDVYHILTSERERRASYSAQMQ--------------------EIQHS 571
Cdd:TIGR02168 565 LKQneLGRVTflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnalelakKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 572 FSILT---------------SCDTRSScdipnVQKITVRVLDLTEKLSRAKDMLACAQHALLRKKQPEQDLQDVRAHLQQ 636
Cdd:TIGR02168 645 YRIVTldgdlvrpggvitggSAKTNSS-----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 637 CSQELAKKETALHALQETLTQQRVRIHALSIRLPKELLASNllapQKMQHEKESVAYWKEMLAHCQTLMRELHTHIEEYD 716
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE----AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 717 REFNEIENASSALGADIAA-REDALNHVQKEYMHLARTVCCARTEAHFNNNEEVTAALMTDAELSHAAAEIQfFNELRAA 795
Cdd:TIGR02168 796 EELKALREALDELRAELTLlNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-IEELESE 874
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 3322922 796 DTHLLKtleaeigteipsDLDELNAQCHTLVKDEENFLSRIEILSATLHTLTHQylkYEECSKQLAQ 862
Cdd:TIGR02168 875 LEALLN------------ERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELREKLAQ 926
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
182-346 |
3.88e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 182 TALMERAKKKSlHAKAVLETLRSQLETLCAECMPDTYHERKQTLEAELQHARDALQQTRISHAYYTQKREALEAQLKKQQ 261
Cdd:PTZ00121 1108 TGKAEEARKAE-EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 262 LCK--ELRARIETYRAQEPVHAETQKRIDRARKA--APLAAHIKHVTQCEQDAQRihAEIQEKMRSREQLLM---KRAAH 334
Cdd:PTZ00121 1187 VRKaeELRKAEDARKAEAARKAEEERKAEEARKAedAKKAEAVKKAEEAKKDAEE--AKKAEEERNNEEIRKfeeARMAH 1264
|
170
....*....|....*
gi 3322922 335 VAQQSSI---EEQRR 346
Cdd:PTZ00121 1265 FARRQAAikaEEARK 1279
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
226-330 |
8.52e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3322922 226 EAELQHARDALQQTRISHAYYTQKREALEAQLK-KQQLCKELRARIETYRAQEPVHAETQKRIDRARKAAPLAAHIKHVT 304
Cdd:COG3096 997 EEARREAREQLRQAQAQYSQYNQVLASLKSSRDaKQQTLQELEQELEELGVQADAEAEERARIRRDELHEELSQNRSRRS 1076
|
90 100
....*....|....*....|....*.
gi 3322922 305 QCEQDAQRIHAEiqekMRSREQLLMK 330
Cdd:COG3096 1077 QLEKQLTRCEAE----MDSLQKRLRK 1098
|
|
| |
