1F6D,1O6C,1V4V


Conserved Protein Domain Family
GT1_UDP-GlcNAc_2-Epimerase

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cd03786: GT1_UDP-GlcNAc_2-Epimerase (this model, PSSM-Id:99962 is obsolete and has been replaced by 340819)
Click on image for an interactive view with Cn3D
Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Statistics
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PSSM-Id: 99962
Aligned: 233 rows
Threshold Bit Score: 233.937
Created: 8-Nov-2005
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitehomodimer
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                                                       
1F6D_A         2 KVLTVFGTRPEAIKXAPLVHALAkdp-ffEAKVCVTAQHReXLDQVLKLf------sIVPDYDLNIxqpgqglTEITCRI 74  Escherichia coli
NP_001026603  11 RVCVATCNRADYSKLAPIMFGIKaepqffELDVVVLGSHLiDDYGNTYRmieqddfdIHTRLHTIVrgedeaaMVESVGL 90  chicken
YP_485156      5 KICVVVGSRANYSSIKSAMRAIQdhp-alELQLIVAASAVlDRYGSVVNliekdgfrPHARVTMLIegetpatMAKSTGL 83  Rhodopseudomona...
XP_795233     45 RVCVATTNRADYSKLGNIMQAIKdde-mlELSTIVLGCHLiDDYGSTYRliekdgftIDSRLHTIVrgedeaaMVESVGL 123 purple urchin
YP_864492      2 KLLGITCSRAEYDLMSGLYMRLHadp-dvELKLLVAGSHLsPTFGRSVQairqdgldILLTLETLLdadsrvsRLKSASL 80  Magnetococcus s...
ZP_01540261    2 KILAITSIRSDYDLLSPLFFKLQqdt-sfVLKLLVGGAHNsTSFGHTVNdikndgfdILMEIESLLdsnssagRLKSASI 80  Shewanella wood...
NP_001072728  11 RVCVATCNRADYSKLAPIMFGIKaepdrfVLSVVVIGSHLiDDYGNTYRmieqddfdIQARLHTIVrgedeasMVESVGL 90  western clawed ...
YP_001395853   5 KILAFTGIRSDYELMSLLYKKLNean-dfEIKLVVSGAHLsETYGYTLNnivedgipVIAQIENLIdsnsrasRIKSLSI 83  Clostridium klu...
EDP94261       5 KICAVVTARPSYSRIKTALKAIQehp-nlELQLVVAGSALlGRYGNAVNviekdgfkIDEKVFMVLegenptaMAKTTGL 83  Kordia algicida...
EDQ27791       4 KLCLVITTRGNYAKVKSIIQAAEndp-dvELQIIVGGGAIlAKYGNIADslttmgvnVDRRIHFLVegetpvtMAKSAGL 82  Desulfatibacill...
Feature 1                                                                                        
1F6D_A        75 LEGLKPILAEf-kPDVVLVHGDTtTTLATSLAAFYqRIPVGHVEAGLrtgdlySPWPEEANRTLTGhlaXYHFSPteTSR 153 Escherichia coli
NP_001026603  91 ALVKLPDVLNrlkPDIMIVHGDRfDALALATSAALmNIRILHIEGGEvs---gTIDDSIRHAITKLa--HYHVCCtrSAE 165 chicken
YP_485156     84 GLIELPTLFEqlgPDVVLTVGDRfETMATTLAAAYmNIPVAHTMGGEvs---gTIDESIRHAVTKFa--HIHFPAsqGAA 158 Rhodopseudomona...
XP_795233    124 AMVKLPDIMLrlkPDVVIVHGDRfDVLSLAACAALmNIRIVHVEGGEvs---gTIDDSIRHTISKLa--HYHVCCteRAH 198 purple urchin
YP_864492     81 LLQNSIDLVAhydPDLILYAGDReEVIIGGLLGAYlEIPTCHFFGGDhsq-dgHVDHMVRHATSKLs--TVHMVSlpQHA 157 Magnetococcus s...
ZP_01540261   81 LLISAIDVVKsfnPDLIIYAGDReEVMVGALLGGYlSIPTIHFYGGDhaa-dgHIDNPIRHAVSKLs--TCHFVStdEHV 157 Shewanella wood...
NP_001072728  91 ALVKLPDVLNrlnPDIIVVHGDRfDALALATSAALmNIRILHIEGGEvs---gTIDDSIRHSITKLa--HYHACCtrSAE 165 western clawed ...
YP_001395853  84 LLQDCIHTAAaykPDVILYAGDReEVVVGGLIGTYlRIPTIHFFGGDhal-dgNIDNLVRHAVSKLs--SLHFVSneESK 160 Clostridium klu...
EDP94261      84 GVMELSNVFYnlkPDAVITIADRfETIATSIAAAYqNIPLVHIQGGEvt---gNIDEKVRHANTKLa--DLHLVAseDAK 158 Kordia algicida...
EDQ27791      83 AVSEFTTAFEnlqPDVVMVIADRfECLSIAMTASYmNIPVAHMEGGEvs---gSIDESIRHAITKLs--HVHFPAtqEAA 157 Desulfatibacill...
Feature 1                                                                                        
1F6D_A       154 QNLLREnVADSRIFITGNTVIDALLWVRDqvxssdklrselaanypfidpdkKXILVTGHRREsf----gRGFEEICHAL 229 Escherichia coli
NP_001026603 166 QHLIAMcEDHDRILLVGCPSYDKLLSAKNkdymsvirm-----wlgedvkprDYIVALQHPVTtdikhsiKMFELTLDAL 240 chicken
YP_485156    159 ERIIKLgELPRHVHMVGCPRIDLVAEILGrssggldaglfdlgvgqqfsvdePFALVSQHPVTteygtgeAQITLTLEAV 238 Rhodopseudomona...
XP_795233    199 KRLLAMcEDNDRILLAGCPSYDKLLSTDVvdcqhilnr-----wlkgegkskEYIVALQHPVTtniadslKMYSLMVDAL 273 purple urchin
YP_864492    158 QRLLKMgEAPQRVHQIGSIALDKFVRHQPaelaaihaq------lgiqegftRYALVIFHPVAeekaqahHYFENILLSL 231 Magnetococcus s...
ZP_01540261  158 RRLLSLgEPPQRIFNIGSIALDKFNNVKPipnikdli--------anktvtkPAAILIYHPIDeekristQLIDTMVESL 229 Shewanella wood...
NP_001072728 166 QHLIAMcEDHDRILLAGCPSYDKLLSVNNkdymsvikm-----wlgddaksgEYIVALQHPVTtdikhsiKMFEFTLDAL 240 western clawed ...
YP_001395853 161 QRLIKIgENKNRIFNVGSPALDKFISTEYigkkeivh-------ilgkprwnNYAVMIFHPLAgeedragKYFEEILVAL 233 Clostridium klu...
EDP94261     159 DRVVKLgEDPAYVINTGCPSIDIAKEVLEnnnyefdpikkyggvgadldisnGYLVVMQHPETnryksarEDVLCTLEAV 238 Kordia algicida...
EDQ27791     158 DRIIRMgEAPETVFPVGATSLDVIAGLDLdnlqpimekqasagvgarvdltqPYLTVIQHPVTteyaenlEHVNQTLNAI 237 Desulfatibacill...
Feature 1                                                      # #  #                #   #       
1F6D_A       230 ADIAtthqdiQIVYPVHln--pNVREPVNrilg---hvknVILIDPQEYlPFVWLXnhAWLILTDSG-GIQEEAPSlgKP 303 Escherichia coli
NP_001026603 241 ISFNkr---tLVLFPNVdagskEMVRVMRkkgie-hhpnfRAVKHVPFDqFIQLVAh-AGCMIGNSScGVREVGAFg-TP 314 chicken
YP_485156    239 REQGla---aIVLWPNAdagsdDISRGIRkwrerklddrmHFFKNLPIEtYVNLMRs-AACLVGNSSsGIREGAYIg-TP 313 Rhodopseudomona...
XP_795233    274 MEFNkr---vIMLFPNIdagskDIVRIMRqkgve-tnpmfYPVKHIPFEeFIILVAn-AGCMIGNSSaGVREAGAFg-TP 347 purple urchin
YP_864492    232 KKRNip---aLVSAPNAdegfsRLLEVVEhyrg---dphfHFYRNLERAlFLSVYKr-CDFLIGNSSsGIIEAASIp-IP 303 Magnetococcus s...
ZP_01540261  230 NSAGyh---cFLGLPNSdpgnaEIRSALKhaakk--yedvTLYGNLSREqFVNLFKq-SSLIVGNSSaGLLEAASIp-VP 302 Shewanella wood...
NP_001072728 241 LSFNkk---tLILFPNIdagskEMVRVMRkkgve-hhpnfRAVKHVPFEqFIQLVAh-AGCMIGNSScGVREAGAFg-TP 314 western clawed ...
YP_001395853 234 EKKSvn---aFVSYPNVdsgnkKIIEVIKkyyn---kedfKFYKNIPRTlFVNLLRn-SMFMIGNSSaGLYEAPILk-LG 305 Clostridium klu...
EDP94261     239 HELNip---tFWFWPNVdagsdGTSNGIRyyrenfnpeniRFFKNMEPNdFLHLLKn-CDCLVGNSSvGIRECSFIg-VP 313 Kordia algicida...
EDQ27791     238 HELGmg---tIWIWPNMdagsdGISKGIRifrekhvdapmHFFKSLPIEhYAPLLKn-AQAIVGNSSsGIREAAFLg-TP 312 Desulfatibacill...
Feature 1                                                                           
1F6D_A       304 VLVXRdtterpeavtaGTVRLVgtdkqRIVEEVTRLLkdeneyqaxsrahnpygdgqaCSRILEALK 370 Escherichia coli
NP_001026603 315 VINLGtrqtgretgenVLHVRDadtqdKILHALQLQFgkqypcsk------iygdgnaVPRILKFLK 375 chicken
YP_485156    314 VVNIGtrqhmrdrgdnVIDVGYdk--kQISDAIARQVehgryamd-----piygdgtaGTKIADILV 373 Rhodopseudomonas palustris HaA2
XP_795233    348 VVNLGsrqtgretgenVLHCRDadttqKIHHALEIQYqrqfppsy------iygdghaVPRIIKFLK 408 purple urchin
YP_864492    304 VINVGlrqrgrlaganVHFCDPhp--eALDHALEQVAkpafqnslkg-lknpygdgqsEVKAHQLIR 367 Magnetococcus sp. MC-1
ZP_01540261  303 CVNVGarqrdryctdnVLFVDAtl--kAIKQGIKQASspeftkklaq-isnpygngnsAKLAYSLIK 366 Shewanella woodyi ATCC 51908
NP_001072728 315 VINLGtrqtgretgenVLHVRDadtqnKIIHALQLQFgkrypcsk------iygdgnaVPRIVKFLK 375 western clawed frog
YP_001395853 306 AVNVGnrqkgrlcaenMIFVHQgv--sNIVKGIETVLteefkllldk-vqspygsgnsVEKIISLMR 369 Clostridium kluyveri DSM 555
EDP94261     314 TVNIGtrqnrrqrgknVVDAEYnk--eAIKTAIQERIgqkgmlse-----hiygngnsGKQIADALA 373 Kordia algicida OT-1
EDQ27791     313 CVNIGsrqsgrdrsvnIIDVGYdk--aEIKAAIQKQLdhgryeen-----hmwgdgkaGPKILDVLK 372 Desulfatibacillum alkenivora...

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