Conserved Protein Domain Family
BLM_N

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pfam16202: BLM_N (this model, PSSM-Id:435212 is obsolete and has been replaced by 465064)
N-terminal region of Bloom syndrome protein
BLM_N is the very N-terminal region of chordate Bloom syndrome proteins. The exact function is not known.
Statistics
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PSSM-Id: 435212
Aligned: 18 rows
Threshold Bit Score: 330.196
Created: 27-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_023505347    1 MAAVPLNNLQEQLERHSARKLNNKLSLSKPKSSGFTFKKKISSANDVSVTSVSVAKTPVLSDKDVNVTEARSFTEPL-PP 79   horse
3_pfamImport    1 MTAVPQNNLQKQLELHSAKGAQNKLSLSKSKPGGFTFKKKTPPGNNDATTFSEVKLTNVLKDKDVNIHENISLAKPLtSS 80  
XP_007479356    1 MAVIPQNNLQQQLERHSAKEIQNKLNVLRPKSTGFTFKKKIPPGN-------SVTHAPVLGDKDVNVTETFPLSKAF-FN 72   gray short-ta...
XP_023352609    1 MAIIPQNNLQQQLERHSAKEIQNKLNVLKHKSTGFTFKKKIPSSS-------SVTQAFVLSDKDVNITENVPLSKPL-PN 72   Tasmanian devil
XP_012813863    1 MAALPQNNLQKQLELFSAKGTANKLSLQKPKSSVFTFKKKCSPNGSLSTGFVEVKQNVALKDKNVNVKQNDVQTNLTvLP 80   tropical claw...
XP_008273539    1 MAAVPQNNLQEQLELHSARKLHNRLNLSKPKSSGFTFKKKASSGNSASVTSVSAARTPVLSDKDVNVTEGSSFSEPQ-AC 79   rabbit
EHB03240        1 MAAIPLNNLQEQLERHSARKLNNKSDLSKPKPCGFTFKKKTTSDNDASVTSVSIAKTPVLSDKDVNVSEVFSFTEPP-PH 79   naked mole-rat
EGW13408        1 MAAVPLNNLQEQLQRHSARKLNNKFDLSKPKSSGFTFKKKTSEG-DVSVTSVPVVKTPALSDKDVIVSEAFPSTESPlLH 79   Chinese hamster
EDM08651        1 MAAVPLNNLQEQLQRHSARKLKNQFSVSKPKPSGFTFKKKTPEGD------VSVVRTPVLSDKDVNMSEALSYTEPP-LH 73   Norway rat
O88700          1 MAAVPLNNLQEQLQRHSARKLNNQPSLSKPKSLGFTFKKKTSEG-DVSVTSVSVVKTPALSDKDVNVSEAFSFTESP-LH 78   house mouse
XP_023505347   80 PP---NQQTSISDF--KKAPGGQQTKRIGSKPLLPDLLQFPQEVLCTTQK----TPVVKKS------RDATFKKLEFSSS 144  horse
3_pfamImport   81 LTkhnDQQLKIGHFfeKNCKSQPQVTQMFSGQPFLNCSESVRQTSKILPVftrpEETIKEPkqpsakPEESSKKSELDCS 160 
XP_007479356   73 AK---NQQTSISDSs-EKTSKAQQIQKFCSNQILLNSSKNTQETSKVSQPpt-kENCVKKE------LCKDSKILETNSS 141  gray short-ta...
XP_023352609   73 TK---NQQASITASs-EKTSKGQQIHKFCSNQILSDSSKNTHETSCYLQPst-nENSVKKV------LCKDSKKLELNSS 141  Tasmanian devil
XP_012813863   81 KS---AERNKINGFf---------------TPVYTKSTQLPQTVAVKDHVhi-nDSANKHPr----vEDSASKKTGINTS 137  tropical claw...
XP_008273539   80 PA---GPPARINDFf-KNAPAGLQSRGAGSTPLLPDVSQTPQEASCTPRL----APAAKTP------RDTVFKKLDFSSS 145  rabbit
EHB03240       80 TP---SQQPRINGFf-KNAAVGQQGQRTGSKLLLTGLLQIPQEALPTTQN----ISAVKKP------HNAILKKLEFSSS 145  naked mole-rat
EGW13408       80 TP---KQQPGIDGFf-KNSLGEQQTK--GTKPSQLDLVQIPQEVLCTAPK----TPAVKKP------HISVFKKLEFSSS 143  Chinese hamster
EDM08651       74 KP---KQQSNIDGFf-KNSPGGQQSKETCSELSLPEVVQIPQDASCTTPK----TPAVKKP------HVAIFKKLEFSSS 139  Norway rat
O88700         79 KP---KQQAKIEGFf-KHFPGRQQSKGTCSEPSLPATVQTAQDTLCTTPK----TPTAKKL------PVAVFKKLEFSSS 144  house mouse
XP_023505347  145 SDSFITINDWDDMDDFDTSGSSKAFVTPSRNHSVRVS------TAQKCKKSKRTFLKAQLPKANSVKADl---tPSSSEI 215  horse
3_pfamImport  161 FSTVISIEDWDDLDDFDTSWQAKHYKSTPSSHQSKINlssgtfNDSLSTRNSKNVLSPQKSIQDTMDKD-----NQVGYA 235 
XP_007479356  142 FDSIL-VNDWDDIDDFDTSGNSKTFTTPSRTHFTKLN------NTQRSKTDKNNLSKTQ---TSGKKIDpellnFPSGKS 211  gray short-ta...
XP_023352609  142 FDSTSLVSDWDDIDDFDTSGNSKTFTTPSRSNFAKLN------STQRSKGDKNNLSKTRARKANGKKVDpellnFPSGKN 215  Tasmanian devil
XP_012813863  138 FGSVTSLEEWDDLDDFDTS------VSPPKSQAGKIKi-----TPQNCKNTSPVSSKIQCLSPKGPTIEkqmcaKKPYEN 206  tropical claw...
XP_008273539  146 LDSLGALNGWDDMDDFDTSGTPKAFAASPRKPVARVS------TAQKSKRAKRNFCKAQLKKADAAEADl---tPASAAS 216  rabbit
EHB03240      146 SDSFHTMNDWDDMDDFDTSETSKVFATPPKNHLVRVS------TAQKSKKAKRNFFKAQPHKTNTVKADl---tP--SES 214  naked mole-rat
EGW13408      144 PDS---LNDWADMDDFDISA-SDAFVSMSRNPVIRVS------TAQKPKKSIRNFFKPPPHKASVVKAGl---tLSSPES 210  Chinese hamster
EDM08651      140 ADS---LSDWADIDDFDVPA-SDAFVSLTRNPTTRVS------TAKKLSSSKRNFFKPPP-RASAVKADl---tPSSPEC 205  Norway rat
O88700        145 ADS---LSDWADMDDFDMSA-SDAFASLAKNPATRVS------TAQKMKKTKRNFFKPPPRKANAVKTDl---tPPSPEC 211  house mouse
XP_023505347  216 EQVDLTKKQ-DD---------SEW---LSSDVICIDDGPNSkel-ineDMQESHS----LGE-ERDSGEKKKNLEEKELH 276  horse
3_pfamImport  236 NSFEISERSlTC---------VDLvslNSTGSVVIDEEETN-------CIKENERrdthRYS-ETQNRELKWRETDGDSN 298 
XP_007479356  212 RQVELTRKElPE---------SEE---LNSPVICLDDY-VSeev-rneDIQESHAskthLCK-ERDDNEKKKYPNGTEQH 276  gray short-ta...
XP_023352609  216 KQAELIKKElPE---------SEE---LSSPMICLDDDPISeef-kneDIQEKQAlktqLDD-ERDYSEKKKSPERVEQH 281  Tasmanian devil
XP_012813863  207 NEIASEPQKlVH---------AQTaemPDKSLVCLGSVEHTn-----------------LGSaEKDTCRNIDYSGTDDIE 260  tropical claw...
XP_008273539  217 KPVELAGAGkGD---------CDG---VGGGVICIDDDDGPvsqvlilDSQESHSlethLGG-ERDHPEDKKVLDTVELH 283  rabbit
EHB03240      215 QPVDLTKEEkDD---------SEW---LKSGVICIDDDSIPqvh-tdeDTQERHSlkihLGD-ERDNNE-KHNEEDVELL 279  naked mole-rat
EGW13408      211 SQVDLTKDQkDE---------SEY---LSGDVICIDSDPGSeel-vkkDAQESQSleteLEV-ERDNSEKKNHVGEVKLQ 276  Chinese hamster
EDM08651      206 LQVDLTKEQeEE---------ADC---LSRDVICIDTDPASeel-lekDVQEGLSldarLGT-ERVDSAKKSHEDEAAFQ 271  Norway rat
O88700        212 LQVDLTKESeEEeeeeeeaegADC---LSRDVICIDNDSASeel-tekDTQESQSlkahLGA-ERGDSEKKSHEDEAVFH 286  house mouse
XP_023505347  277 SIEKSP---CVEFDEDDYDMDFVPPSPEEGMISGSs--sSLKCLSVLKDLDTPD-RKDGLSTSED-LSKAEKMTVQQPHQ 349  horse
3_pfamImport  299 LVHQSNe--NFVFENDDFDIDFIPPSPQDPMSSPS----FIQHKSNLKQSTCCSeGLLGMTISDPvISEHNQDILRQPPQ 372 
XP_007479356  277 AADESLgadFAEFNEDDFDIDFIPPSPEEEVFSPSscssSLKYFSTLKESSTCDkEKNGTKLSDDfLSESEKTTSLQPIQ 356  gray short-ta...
XP_023352609  282 TIDESLganCEEFNEDDFDIDFIPPSPEEGVFSSS--------LSTLKEPSICDeGKNATKLSNYfSSESEKTTSPQLLQ 353  Tasmanian devil
XP_012813863  261 HDQETLs-qALIENEDDCEPDFIPPSPSDESLSSP---------PVLRVIGAQ--RKHKVSSVTD-VNDCENTADHLQSQ 327  tropical claw...
XP_008273539  284 SAEEVP---CIELEDDDYDIDFVPPSPEEEVSSATs--sSLKCSSMLKDLDTPHrEKDVLSPAQDlLSKPEKLTPQEPDP 358  rabbit
EHB03240      280 SSEKAT---CVELNDDDY-IDFVPPSPEEESISASs--sSLKCFSALKDLDASDqEEDVLSTSKDlLSKPEKMTTQEPNP 353  naked mole-rat
EGW13408      277 STEKAL---Y--DDDDDYDVDFVPPSPEEEIISAAs--sSSKCCSMLKDLDDSDkEKDILNTSKDlLSKPEEMPAKEPDP 349  Chinese hamster
EDM08651      272 SPQNAL---YFEHNDNDYDIDFVPPSPEE-IISTAs--sSLKCSSMLKDLDDSDkEKDILSTSKD-LSKPEEMTTPKSDL 344  Norway rat
O88700        287 SVQNTE---YFEHNDNDYDIDFVPPSPEE-IISTAs--sSLKCSSMLKDLDDSDkEKGILSTSEElLSKPEEMTTHKSDA 360  house mouse
XP_023505347  350 ETSTDCDVRQISL 362  horse
3_pfamImport  373 WSNSNREAEAFGS 385 
XP_007479356  357 ETSTKHDGKLLTL 369  gray short-tailed opossum
XP_023352609  354 ETSTKYDGKLLTL 366  Tasmanian devil
XP_012813863  328 CVSSSLDSK---V 337  tropical clawed frog
XP_008273539  359 ETTAGCEARPSPV 371  rabbit
EHB03240      354 EISTDCDARQISL 366  naked mole-rat
EGW13408      350 GTNTDCDDKQMSV 362  Chinese hamster
EDM08651      345 GTNEDCDAQQTSL 357  Norway rat
O88700        361 GTSKDCDAQQIRI 373  house mouse
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