Conserved Protein Domain Family
KH-I_DDX43_DDX53

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cd22430: KH-I_DDX43_DDX53 
type I K homology (KH) RNA-binding domain found in DEAD box protein 43 (DDX43), DEAD box protein 53 (DDX53) and similar proteins
DDX43 (also called cancer/testis antigen 13, or DEAD box protein HAGE, or helical antigen) displays tumor-specific expression. Diseases associated with DDX43 include rheumatoid lung disease. DDX53 (also called cancer-associated gene protein, or cancer/testis antigen 26, or DEAD box protein CAGE) shows high expression level in various tumors and is involved in anti-cancer drug resistance. Both DDX46 and DDX53 are members of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation.
Statistics
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PSSM-Id: 411858
Aligned: 14 rows
Threshold Bit Score: 73.4733
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # ### #####  ##  ##    ####                                  
Q86TM3        50 PLCFKIKNNMVGVVIGYSGSKIKDLQHSTNTKIQIIng--eSEAKVRIFGNR-EMKAKAKAAIETLIRK 115 human
Q9NXZ2        69 PLCFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIqe--qPESLVKIFGSK-AMQTKAKAVIDNFVKK 134 human
TFK12629     113 PLCFHLDNAMIGTIIGRAGTKIRELEDSSGSKIQVIrg--tYEAEVKIFGSN-DTQNKAKMLIDDLVKR 178 big-headed turtle
XP_426195     77 PLCFLISSALAGVLIGRGGAKIKELEESSGSRIQVIkg--tSEAEVKIFGSA-AVQNKAKVLIDETVVS 142 chicken
RXN01432     103 PLSFNVESSMIGAVIGRGGAKIRELEENTGARIKINrg--dYEGEVKIFGSS-EAQIRAKQLIDELIER 168 sterlet
XP_016132406 104 PTTLNVENSLVGRIIGRGGAKIRELEESSGASIKINrg--aHEAEVLVFGSR-DAQLKAKDMIEDLVHG 169 Sinocyclocheilus grahami
AAI21889      95 PLCFHLDSSAIGQVIGRGGSKIRELEELSGCRIKIEkl--dYDSEVKIYGNS-EQQQKAKELIDDIVEQ 160 western clawed frog
Q2GEY8       558 ILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDID-----QNNYVYIMADTeEALMEAKTRVDMASGA 621 Neorickettsia sennetsu str...
XP_007484256 121 SLCLPIDKNLVGALIGYRGSTVRAIEQLTSTHISIKer--gDQQSVCIYGSY-EACGRGLDVVECVLGW 186 gray short-tailed opossum
ERL92627      65 YFPGSYSQLTFNIFLGRGGSQITDLQTRSSSRIKVTkdtegDETFIKIFGDD-SAIQKAKELIDELTVD 132 mountain pine beetle

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