Conserved Protein Domain Family
C1_aPKC

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cd20794: C1_aPKC 
protein kinase C conserved region 1 (C1 domain) found in the atypical protein kinase C (aPKC) family
PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Members of this family contain one C1 domain. The C1 domain is a cysteine-rich zinc binding domain that does not bind DNA nor possess structural similarity to conventional zinc finger domains; it contains two separate Zn(2+)-binding sites.
Statistics
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PSSM-Id: 410344
Aligned: 25 rows
Threshold Bit Score: 98.4922
Created: 4-Oct-2019
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:H C C C C H C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:Two non-consecutive sets of zinc-binding residues form two separate metal-binding sites.
  • Comment:Based on structure evidence that Homo sapiens PKC-gamma binds two Zn2+ ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #            #  #             #  #    #  #         #   
Q05513       129 NGHLFQAKRFnrrAYCGQCSERIWGLARQGYRCINCKLLVHKRCHGLVPl--tCRKH 183 human
Q19266       126 NGHRFQAKRLnrrIQCFICHDYIWGIGRQGFRCVDCRLCVHKKCHRHVRt--hCGQA 180 Caenorhabditis elegans
TNN20114     123 HGHQFAARRFnrkAVCAYCKEHIWGLGQQGFKCINCRLLLHRRCQGGVRh--kCGEA 177 Schistosoma japonicum
XP_012559790 117 SGHSFVARRFgkmTPCPICKDFIWGLGRQGVKCMNCKYMVHKRCVRVVKl--iCGQQ 171 Hydra vulgaris
GAV00767     128 NGHVYQKKRLnrfAVCHVCRDRIWGFGSPGFKCVNCRLLVHRRCHEQVRv--aCEPQ 182 Ramazzottius varieornatus
XP_009030124 104 CGHLYEVKRFgkrAVCAFCTDHVWGLGRQGLRCVQCKMFVHKRCHRLIRv--pCSVV 158 Helobdella robusta
XP_030549856 143 YGHIYEPKRLk-tDTCAYCQDKIWGLGSGGFKCINCKLMVHKKCHKLCKv--aCGSR 196 Rhodamnia argentea
PAA94794     130 MGHKFQPKRFktqMVCALCNSTIWGLGASGVKCTQCRMLVHKRCYRYANh--qCGQL 184 Macrostomum lignano
XP_003383504 122 NGHAFVAKRLq-aAYCAKCRERIWGLGRQGYKCEACKMVVHKRCCYYLNkdeiCAGH 177 Amphimedon queenslandica
VDK21481     100 KGHNFLARRFnknAVCSYCGDRIWGLGQQGYKCNACKLLIHKRCAPSVDf--yCGEV 154 Taenia asiatica

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